Donald D. Brown - Related publications

Affiliations: 
Carnegie Institution of Washington, Washington, DC, United States 
Area:
hormone signaling, amphibian development
Website:
https://emb.carnegiescience.edu/science/faculty/donald-brown
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Mark KG, Rape M. Ubiquitin-dependent regulation of transcription in development and disease. Embo Reports. e51078. PMID 33779035 DOI: 10.15252/embr.202051078   
2021 Mehta SJK, Joshi PA, Mishra RK. Molecular and Phenotypic Characterization Following RNAi Mediated Knockdown in . Bio-Protocol. 11: e3924. PMID 33732811 DOI: 10.21769/BioProtoc.3924   
2021 Liu S, Punthambaker S, Iyer EPR, Ferrante T, Goodwin D, Fürth D, Pawlowski AC, Jindal K, Tam JM, Mifflin L, Alon S, Sinha A, Wassie AT, Chen F, Cheng A, et al. Barcoded oligonucleotides ligated on RNA amplified for multiplexed and parallel in situ analyses. Nucleic Acids Research. PMID 33693773 DOI: 10.1093/nar/gkab120   
2021 Kim D, Hong SH, Han G, Cho C. Analysis of mouse male germ cell-specific or -predominant Tex13 family genes encoding proteins with transcriptional repressor activity. Molecular Biology Reports. PMID 33811575 DOI: 10.1007/s11033-021-06265-5   
2021 Milne L, Bayer M, Rapazote-Flores P, Mayer CD, Waugh R, Simpson CG. EORNA, a barley gene and transcript abundance database. Scientific Data. 8: 90. PMID 33767193 DOI: 10.1038/s41597-021-00872-4   
2021 Tresenrider A, Morse K, Jorgensen V, Chia M, Liao H, Jacobus van Werven F, Ünal E. Integrated genomic analysis reveals key features of long undecoded transcript isoform-based gene repression. Molecular Cell. PMID 33826921 DOI: 10.1016/j.molcel.2021.03.013   
2021 Kitajima K, Kawahira N, Lee S, Tamura K, Morishita Y, Ohtsuka D. Light-induced local gene expression in primary chick cell culture system. Development, Growth & Differentiation. PMID 33733477 DOI: 10.1111/dgd.12721   
2021 Hansen J, von Melchner H, Wurst W. Mutant non-coding RNA resource in mouse embryonic stem cells. Disease Models & Mechanisms. 14. PMID 33729986 DOI: 10.1242/dmm.047803   
2021 Wu B, Jiang X, Huang Y, Ying X, Zhang H, Liu B, Li Z, Qi D, Ji W, Cai X. Integrated Analysis of mRNA-mA-protein Profiles Reveals Novel Insights into the Mechanisms for Cadmium-induced Urothelial Transformation. Biomarkers : Biochemical Indicators of Exposure, Response, and Susceptibility to Chemicals. 1-23. PMID 33830842 DOI: 10.1080/1354750X.2021.1913513   
2021 Kwik M, Hainzl S, Oppelt J, Tichy B, Koller U, Bernardinelli E, Steiner M, Zara G, Nofziger C, Weis S, Paulmichl M, Dossena S, Patsch W, Soyal SM. Selective Activation of CNS and Reference Promoters Is Associated with Distinct Gene Programs Relevant for Neurodegenerative Diseases. International Journal of Molecular Sciences. 22. PMID 33804860 DOI: 10.3390/ijms22073296   
2021 Xu L, Li Z, Wang S. Development of a Virus-Based Reporter System for Functional Analysis of Plant rRNA Gene Promoter. Frontiers in Microbiology. 12: 637347. PMID 33679673 DOI: 10.3389/fmicb.2021.637347   
2021 Zhang Y, Ding W, Wang Z, Zhao H, Shi S. Development of Host-Orthogonal Genetic Systems for Synthetic Biology. Advanced Biology. 5: e2000252. PMID 33729696 DOI: 10.1002/adbi.202000252   
2021 Zhang Y, Ding W, Wang Z, Zhao H, Shi S. Development of Host-Orthogonal Genetic Systems for Synthetic Biology. Advanced Biology. 5: e2000252. PMID 33729696 DOI: 10.1002/adbi.202000252   
2021 He K, Zhang J, Liu J, Cui Y, Liu LG, Ye S, Ban Q, Pan R, Liu D. Functional genomics study of protein inhibitor of activated STAT1 in mouse hippocampal neuronal cells revealed by RNA sequencing. Aging. 13. PMID 33759814 DOI: 10.18632/aging.202749   
2021 Jin XH, Zhang YF, Yuan YX, Han L, Zhang GP, Hu H. Isolation, characterization and transcriptome analysis of porcine deltacoronavirus strain HNZK-02 from Henan Province, China. Molecular Immunology. 134: 86-99. PMID 33740580 DOI: 10.1016/j.molimm.2021.03.006   
2021 Son SH, Jang SY, Park HS. Functions of PUF family RNA-binding proteins in . Journal of Microbiology and Biotechnology. PMID 33746193 DOI: 10.4014/jmb.2101.01011   
2021 Goszczynski DE, Halstead MM, Islas-Trejo AD, Zhou H, Ross PJ. Transcription initiation mapping in 31 bovine tissues reveals complex promoter activity, pervasive transcription, and tissue-specific promoter usage. Genome Research. 31: 732-744. PMID 33722934 DOI: 10.1101/gr.267336.120   
2021 Gajos M, Jasnovidova O, van Bömmel A, Freier S, Vingron M, Mayer A. Conserved DNA sequence features underlie pervasive RNA polymerase pausing. Nucleic Acids Research. PMID 33788942 DOI: 10.1093/nar/gkab208   
2021 Du H, Zaman S, Hu S, Che S. Single-Molecule Long-Read Sequencing of Purslane () and Differential Gene Expression Related with Biosynthesis of Unsaturated Fatty Acids. Plants (Basel, Switzerland). 10. PMID 33808162 DOI: 10.3390/plants10040655   
2021 Meng F, Zhao H, Zhu B, Zhang T, Yang M, Li Y, Han Y, Jiang J. Genomic Editing of Intronic Enhancers Unveils Their Role in Fine-Tuning Tissue-Specific Gene Expression in Arabidopsis thaliana. The Plant Cell. PMID 33764459 DOI: 10.1093/plcell/koab093   
2021 Mayère C, Neirijnck Y, Sararols P, Rands CM, Stévant I, Kühne F, Chassot AA, Chaboissier MC, Dermitzakis ET, Nef S. Single-cell transcriptomics reveal temporal dynamics of critical regulators of germ cell fate during mouse sex determination. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 35: e21452. PMID 33749946 DOI: 10.1096/fj.202002420R   
2021 Abbas F, Ke Y, Zhou Y, Yu Y, Waseem M, Ashraf U, Wang C, Wang X, Li X, Yue Y, Yu R, Fan Y. Genome-Wide Analysis Reveals the Potential Role of MYB Transcription Factors in Floral Scent Formation in . Frontiers in Plant Science. 12: 623742. PMID 33719296 DOI: 10.3389/fpls.2021.623742   
2021 Zhao W, Liu Y, Li L, Meng H, Yang Y, Dong Z, Wang L, Wu G. Genome-Wide Identification and Characterization of bHLH Transcription Factors Related to Anthocyanin Biosynthesis in Red Walnut ( L.). Frontiers in Genetics. 12: 632509. PMID 33719341 DOI: 10.3389/fgene.2021.632509   
2021 Zhou Y, Zhang X, Xiong S, Zeng X, Zhang X. Predicted gene 31453 (Gm31453) and the gene encoding carboxypeptidase A5 (Cpa5) are not essential for spermatogenesis and male fertility in the mouse. Reproduction, Fertility, and Development. PMID 33745502 DOI: 10.1071/RD20284   
2021 Zhang X, Lv S, Luo Z, Hu Y, Peng X, Lv J, Zhao S, Feng J, Huang G, Wan QL, Liu J, Huang H, Luan B, Wang D, Zhao X, et al. MiniCAFE, a CRISPR/Cas9-based compact and potent transcriptional activator, elicits gene expression in vivo. Nucleic Acids Research. PMID 33751124 DOI: 10.1093/nar/gkab174   
2021 Wang Z, Ji S, Huang Y, Liao K, Cui Z, Chu F, Chen J, Tang S. The daily gene transcription cycle in mouse retina. Experimental Eye Research. 108565. PMID 33838143 DOI: 10.1016/j.exer.2021.108565   
2021 Wang JC, Ramaswami G, Geschwind DH. Gene co-expression network analysis in human spinal cord highlights mechanisms underlying amyotrophic lateral sclerosis susceptibility. Scientific Reports. 11: 5748. PMID 33707641 DOI: 10.1038/s41598-021-85061-4   
2021 Jacques-Fricke BT, Roffers-Agarwal J, Hussein AO, Yoder KJ, Gearhart MD, Gammill LS. Profiling NSD3-dependent neural crest gene expression reveals known and novel candidate regulatory factors. Developmental Biology. PMID 33705737 DOI: 10.1016/j.ydbio.2021.02.015   
2021 Crespo NE, Torres-Bracero A, Renta JY, Desnick RJ, Cadilla CL. Expression Profiling Identifies TWIST2 Target Genes in Setleis Syndrome Patient Fibroblast and Lymphoblast Cells. International Journal of Environmental Research and Public Health. 18. PMID 33669496 DOI: 10.3390/ijerph18041997   
2021 Nuñez JK, Chen J, Pommier GC, Cogan JZ, Replogle JM, Adriaens C, Ramadoss GN, Shi Q, Hung KL, Samelson AJ, Pogson AN, Kim JYS, Chung A, Leonetti MD, Chang HY, et al. Genome-wide programmable transcriptional memory by CRISPR-based epigenome editing. Cell. PMID 33838111 DOI: 10.1016/j.cell.2021.03.025   
2021 Liu H, Xu W, Bruno VM, Phan QT, Solis NV, Woolford CA, Ehrlich RL, Shetty AC, McCraken C, Lin J, Bromley MJ, Mitchell AP, Filler SG. Determining Aspergillus fumigatus transcription factor expression and function during invasion of the mammalian lung. Plos Pathogens. 17: e1009235. PMID 33780518 DOI: 10.1371/journal.ppat.1009235   
2021 Liu H, Xu W, Bruno VM, Phan QT, Solis NV, Woolford CA, Ehrlich RL, Shetty AC, McCraken C, Lin J, Bromley MJ, Mitchell AP, Filler SG. Determining Aspergillus fumigatus transcription factor expression and function during invasion of the mammalian lung. Plos Pathogens. 17: e1009235. PMID 33780518 DOI: 10.1371/journal.ppat.1009235   
2021 Ye ZF, Zhang P, Gai TT, Lou JH, Dai FY, Tong XL. Sob gene is critical to wing development in Bombyx mori and Tribolium castaneum. Insect Science. PMID 33822467 DOI: 10.1111/1744-7917.12911   
2021 Shehzad M, Zhou Z, Ditta A, Khan M, Cai X, Xu Y, Maqbool A, Khalofah A, Shaban M, Naeem M, Ansari MJ, Wang K, Liu F. Identification and characterization of genes related to salt stress tolerance within segregation distortion regions of genetic map in F2 population of upland cotton. Plos One. 16: e0247593. PMID 33770112 DOI: 10.1371/journal.pone.0247593   
2021 Ding Q, Xu X, Wang X, Ullah F, Gao X, Song D. Characterization and functional analysis of two acetylcholinesterase genes in Bradysia odoriphaga Yang et Zhang (Diptera: Sciaridae). Pesticide Biochemistry and Physiology. 174: 104807. PMID 33838708 DOI: 10.1016/j.pestbp.2021.104807   
2021 Booeshaghi AS, Pachter L. Normalization of single-cell RNA-seq counts by log(x + 1)* or log(1 + x). Bioinformatics (Oxford, England). PMID 33676365 DOI: 10.1093/bioinformatics/btab085   
2021 Kinney N, Kang L, Bains H, Lawson E, Husain M, Husain K, Sandhu I, Shin Y, Carter JK, Anandakrishnan R, Michalak P, Garner H. Ethnically biased microsatellites contribute to differential gene expression and glutathione metabolism in Africans and Europeans. Plos One. 16: e0249148. PMID 33765058 DOI: 10.1371/journal.pone.0249148   
2021 Dachet F, Brown JB, Valyi-Nagy T, Narayan KD, Serafini A, Boley N, Gingeras TR, Celniker SE, Mohapatra G, Loeb JA. Selective time-dependent changes in activity and cell-specific gene expression in human postmortem brain. Scientific Reports. 11: 6078. PMID 33758256 DOI: 10.1038/s41598-021-85801-6   
2021 Kim SM, Rampogu S, Vetrivel P, Kulkarni AM, Ha SE, Kim HH, Lee KW, Kim GS. Transcriptome analysis of sinensetin-treated liver cancer cells guided by biological network analysis. Oncology Letters. 21: 355. PMID 33747212 DOI: 10.3892/ol.2021.12616   
2021 Hou C, Lian H, Cai Y, Wang Y, Liang D, He B. Comparative Analyses of Full-Length Transcriptomes Reveal e Stem Developmental Dynamics. Frontiers in Genetics. 12: 615284. PMID 33841494 DOI: 10.3389/fgene.2021.615284   
2021 Yeo GHT, Juez O, Chen Q, Banerjee B, Chu L, Shen MW, Sabry M, Logister I, Sherwood RI, Gifford DK. Detection of gene cis-regulatory element perturbations in single-cell transcriptomes. Plos Computational Biology. 17: e1008789. PMID 33711017 DOI: 10.1371/journal.pcbi.1008789   
2021 Yeo GHT, Juez O, Chen Q, Banerjee B, Chu L, Shen MW, Sabry M, Logister I, Sherwood RI, Gifford DK. Detection of gene cis-regulatory element perturbations in single-cell transcriptomes. Plos Computational Biology. 17: e1008789. PMID 33711017 DOI: 10.1371/journal.pcbi.1008789   
2021 Peña JM, Prezioso SM, McFarland KA, Kambara TK, Ramsey KM, Deighan P, Dove SL. Control of a programmed cell death pathway in Pseudomonas aeruginosa by an antiterminator. Nature Communications. 12: 1702. PMID 33731715 DOI: 10.1038/s41467-021-21941-7   
2021 Mohr SE, Tattikota SG, Xu J, Zirin J, Hu Y, Perrimon N. Methods and tools for spatial mapping of single-cell RNAseq clusters in Drosophila. Genetics. PMID 33713129 DOI: 10.1093/genetics/iyab019   
2021 Bhatia S, Kumar H, Mahajan M, Yadav S, Saini P, Yadav S, Sahu SK, Sundaram JK, Yadav RK. A cellular expression map of epidermal and subepidermal cell layer-enriched transcription factor genes integrated with the regulatory network in Arabidopsis shoot apical meristem. Plant Direct. 5: e00306. PMID 33748654 DOI: 10.1002/pld3.306   
2021 Scagliotti V, Costa Fernandes Esse R, Willis TL, Howard M, Carrus I, Lodge E, Andoniadou CL, Charalambous M. Dynamic Expression of Imprinted Genes in the Developing and Postnatal Pituitary Gland. Genes. 12. PMID 33808370 DOI: 10.3390/genes12040509   
2021 Casas-Tintó S, Ferrús A. The haplolethality paradox of the wupA gene in Drosophila. Plos Genetics. 17: e1009108. PMID 33739971 DOI: 10.1371/journal.pgen.1009108   
2021 Yu R, Vorontsov E, Sihlbom C, Nielsen J. Quantifying absolute gene expression profiles reveals distinct regulation of central carbon metabolism genes in yeast. Elife. 10. PMID 33720010 DOI: 10.7554/eLife.65722   
2021 Andrade A, Hernández-Eligio A, Tirado AL, Vega-Alvarado L, Olvera M, Morett E, Juárez K. Specialization of the Reiterated Copies of the Heterodimeric Integration Host Factor Genes in . Frontiers in Microbiology. 12: 626443. PMID 33737919 DOI: 10.3389/fmicb.2021.626443   
2021 Freewoman JM, Snape R, Cui F. Temporal gene regulation by p53 is associated with the rotational setting of its binding sites in nucleosomes. Cell Cycle (Georgetown, Tex.). 1-16. PMID 33764853 DOI: 10.1080/15384101.2021.1904554