Burak Okumus, Ph.D. - Publications

Affiliations: 
2006 University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
Area:
General Biophysics, Molecular Physics

17 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Lepore A, Taylor H, Landgraf D, Okumus B, Jaramillo-Riveri S, McLaren L, Bakshi S, Paulsson J, Karoui ME. Quantification of very low-abundant proteins in bacteria using the HaloTag and epi-fluorescence microscopy. Scientific Reports. 9: 7902. PMID 31133640 DOI: 10.1038/S41598-019-44278-0  0.38
2018 Okumus B, Baker CJ, Arias-Castro JC, Lai GC, Leoncini E, Bakshi S, Luro S, Landgraf D, Paulsson J. Single-cell microscopy of suspension cultures using a microfluidics-assisted cell screening platform. Nature Protocols. 13: 170-194. PMID 29266097 DOI: 10.1038/Nprot.2017.127  0.323
2016 Okumus B, Landgraf D, Lai GC, Bakhsi S, Arias-Castro JC, Yildiz S, Huh D, Fernandez-Lopez R, Peterson CN, Toprak E, El Karoui M, Paulsson J. Mechanical slowing-down of cytoplasmic diffusion allows in vivo counting of proteins in individual cells. Nature Communications. 7: 11641. PMID 27189321 DOI: 10.1038/Ncomms11641  0.374
2016 Uphoff S, Lord ND, Okumus B, Potvin-Trottier L, Sherratt DJ, Paulsson J. Stochastic activation of a DNA damage response causes cell-to-cell mutation rate variation. Science (New York, N.Y.). 351: 1094-7. PMID 26941321 DOI: 10.1126/Science.Aac9786  0.404
2012 Landgraf D, Okumus B, Chien P, Baker TA, Paulsson J. Segregation of molecules at cell division reveals native protein localization. Nature Methods. 9: 480-2. PMID 22484850 DOI: 10.1038/Nmeth.1955  0.386
2010 Ishitsuka Y, Okumus B, Arslan S, Chen KH, Ha T. Temperature-independent porous nanocontainers for single-molecule fluorescence studies. Analytical Chemistry. 82: 9694-701. PMID 21038883 DOI: 10.1021/Ac101714U  0.595
2010 Okumus B, Ha T. Real-time observation of G-quadruplex dynamics using single-molecule FRET microscopy. Methods in Molecular Biology (Clifton, N.J.). 608: 81-96. PMID 20012417 DOI: 10.1007/978-1-59745-363-9_6  0.6
2009 Okumus B, Arslan S, Fengler SM, Myong S, Ha T. Single molecule nanocontainers made porous using a bacterial toxin. Journal of the American Chemical Society. 131: 14844-9. PMID 19788247 DOI: 10.1021/Ja9042356  0.665
2009 Jena PV, Shirude PS, Okumus B, Laxmi-Reddy K, Godde F, Huc I, Balasubramanian S, Ha T. G-quadruplex DNA bound by a synthetic ligand is highly dynamic. Journal of the American Chemical Society. 131: 12522-3. PMID 19685880 DOI: 10.1021/Ja903408R  0.647
2008 Iqbal A, Arslan S, Okumus B, Wilson TJ, Giraud G, Norman DG, Ha T, Lilley DM. Orientation dependence in fluorescent energy transfer between Cy3 and Cy5 terminally attached to double-stranded nucleic acids. Proceedings of the National Academy of Sciences of the United States of America. 105: 11176-81. PMID 18676615 DOI: 10.1073/Pnas.0801707105  0.544
2008 Cisse I, Okumus B, Joo C, Ha T. Single molecule studies of protein-DNA interactions inside porous nanocontainers Optics Infobase Conference Papers 0.457
2007 Cisse I, Okumus B, Joo C, Ha T. Fueling protein DNA interactions inside porous nanocontainers. Proceedings of the National Academy of Sciences of the United States of America. 104: 12646-50. PMID 17563361 DOI: 10.1073/Pnas.0610673104  0.676
2007 Shirude PS, Okumus B, Ying L, Ha T, Balasubramanian S. Single-molecule conformational analysis of G-quadruplex formation in the promoter DNA duplex of the proto-oncogene c-kit. Journal of the American Chemical Society. 129: 7484-5. PMID 17523641 DOI: 10.1021/Ja070497D  0.587
2007 Cisse I, Okumus B, Joo C, Ha T. Erratum: Single-molecule chemistry and biology special feature: Fueling protein-DNA interactions inside porous nanocontainers (Proceedings of the National Academy of Sciences of the United States (July 31, 2007) 104: 31 (12646-12650) 10.1073/pnas.0610673104) Proceedings of the National Academy of Sciences of the United States of America. 104. DOI: 10.1073/Pnas.0707542104  0.63
2006 Yoon TY, Okumus B, Zhang F, Shin YK, Ha T. Multiple intermediates in SNARE-induced membrane fusion. Proceedings of the National Academy of Sciences of the United States of America. 103: 19731-6. PMID 17167056 DOI: 10.1073/Pnas.0606032103  0.578
2005 Lee JY, Okumus B, Kim DS, Ha T. Extreme conformational diversity in human telomeric DNA. Proceedings of the National Academy of Sciences of the United States of America. 102: 18938-43. PMID 16365301 DOI: 10.1073/Pnas.0506144102  0.593
2004 Okumus B, Wilson TJ, Lilley DM, Ha T. Vesicle encapsulation studies reveal that single molecule ribozyme heterogeneities are intrinsic. Biophysical Journal. 87: 2798-806. PMID 15454471 DOI: 10.1529/Biophysj.104.045971  0.605
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