Maria Chikina, Ph.D. - Publications

Affiliations: 
2011 Princeton University, Princeton, NJ 
Area:
Bioinformatics Biology, Computer Science, Molecular Biology

16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Choi SG, Wang Q, Jia J, Chikina M, Pincas H, Dolios G, Sasaki K, Wang R, Minamino N, Salton SR, Sealfon SC. Characterization of gonadotrope secretoproteome identifies neurosecretory protein VGF-derived peptide suppression of follicle-stimulating hormone gene expression. The Journal of Biological Chemistry. PMID 27466366 DOI: 10.1074/jbc.M116.740365  0.92
2015 Aghaeepour N, Chattopadhyay P, Chikina M, Dhaene T, Van Gassen S, Kursa M, Lambrecht BN, Malek M, Qian Y, Qiu P, Saeys Y, Stanton R, Tong D, Vens C, Walkowiak S, et al. A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. PMID 26447924 DOI: 10.1002/cyto.a.22732  0.92
2015 Hartmann BM, Thakar J, Albrecht RA, Avey S, Zaslavsky E, Marjanovic N, Chikina M, Fribourg M, Hayot F, Schmolke M, Meng H, Wetmur J, García-Sastre A, Kleinstein SH, Sealfon SC. Human Dendritic Cell Response Signatures Distinguish 1918, Pandemic, and Seasonal H1N1 Influenza Viruses. Journal of Virology. 89: 10190-205. PMID 26223639 DOI: 10.1128/JVI.01523-15  0.92
2015 Chikina MD, Gerald CP, Li X, Ge Y, Pincas H, Nair VD, Wong AK, Krishnan A, Troyanskaya OG, Raymond D, Saunders-Pullman R, Bressman SB, Yue Z, Sealfon SC. Low-variance RNAs identify Parkinson's disease molecular signature in blood. Movement Disorders : Official Journal of the Movement Disorder Society. 30: 813-21. PMID 25786808 DOI: 10.1002/mds.26205  0.92
2015 Chikina M, Zaslavsky E, Sealfon SC. CellCODE: a robust latent variable approach to differential expression analysis for heterogeneous cell populations. Bioinformatics (Oxford, England). 31: 1584-91. PMID 25583121 DOI: 10.1093/bioinformatics/btv015  0.92
2015 Badgeley MA, Sealfon SC, Chikina MD. Hybrid Bayesian-rank integration approach improves the predictive power of genomic dataset aggregation. Bioinformatics (Oxford, England). 31: 209-15. PMID 25266226 DOI: 10.1093/bioinformatics/btu518  0.92
2014 Chikina MD, Sealfon SC. Increasing consistency of disease biomarker prediction across datasets. Plos One. 9: e91272. PMID 24740471 DOI: 10.1371/journal.pone.0091272  0.92
2014 Wang Q, Chikina MD, Pincas H, Sealfon SC. Homer1 alternative splicing is regulated by gonadotropin-releasing hormone and modulates gonadotropin gene expression. Molecular and Cellular Biology. 34: 1747-56. PMID 24591653 DOI: 10.1128/MCB.01401-13  0.92
2013 Aghaeepour N, Finak G, Hoos H, Mosmann TR, Brinkman R, Gottardo R, Scheuermann RH. Critical assessment of automated flow cytometry data analysis techniques. Nature Methods. 10: 228-38. PMID 23396282 DOI: 10.1038/nmeth.2365  0.92
2013 Wang Q, Chikina M, Zaslavsky E, Pincas H, Sealfon SC. β-catenin regulates GnRH-induced FSHβ gene expression. Molecular Endocrinology (Baltimore, Md.). 27: 224-37. PMID 23211523 DOI: 10.1210/me.2012-1310  0.92
2012 Nair VD, Ge Y, Balasubramaniyan N, Kim J, Okawa Y, Chikina M, Troyanskaya O, Sealfon SC. Involvement of histone demethylase LSD1 in short-time-scale gene expression changes during cell cycle progression in embryonic stem cells. Molecular and Cellular Biology. 32: 4861-76. PMID 23028048 DOI: 10.1128/MCB.00816-12  0.92
2012 Chikina MD, Troyanskaya OG. An effective statistical evaluation of ChIPseq dataset similarity. Bioinformatics (Oxford, England). 28: 607-13. PMID 22262674 DOI: 10.1093/bioinformatics/bts009  0.92
2012 Arslan MA, Chikina M, Csermely P, Soti C. Misfolded proteins inhibit proliferation and promote stress-induced death in SV40-transformed mammalian cells. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 26: 766-77. PMID 22049061 DOI: 10.1096/fj.11-186197  0.92
2011 Chikina MD, Troyanskaya OG. Accurate quantification of functional analogy among close homologs. Plos Computational Biology. 7: e1001074. PMID 21304936 DOI: 10.1371/journal.pcbi.1001074  0.92
2009 Chikina MD, Huttenhower C, Murphy CT, Troyanskaya OG. Global prediction of tissue-specific gene expression and context-dependent gene networks in Caenorhabditis elegans. Plos Computational Biology. 5: e1000417. PMID 19543383 DOI: 10.1371/journal.pcbi.1000417  0.92
2008 Huttenhower C, Schroeder M, Chikina MD, Troyanskaya OG. The Sleipnir library for computational functional genomics. Bioinformatics (Oxford, England). 24: 1559-61. PMID 18499696 DOI: 10.1093/bioinformatics/btn237  0.92
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