Aaron S. Brewster, Ph.D. - Publications

Affiliations: 
2010 Molecular Biology University of Southern California, Los Angeles, CA, United States 
Area:
Molecular Biology
Website:
http://cci.lbl.gov/people/aaron_brewster.html

42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Barnes CO, Wu Y, Song J, Lin G, Baxter EL, Brewster AS, Nagarajan V, Holmes A, Soltis SM, Sauter NK, Ahn J, Cohen AE, Calero G. The crystal structure of dGTPase reveals the molecular basis of dGTP selectivity. Proceedings of the National Academy of Sciences of the United States of America. PMID 31019074 DOI: 10.1073/pnas.1814999116  1
2018 Kern J, Chatterjee R, Young ID, Fuller FD, Lassalle L, Ibrahim M, Gul S, Fransson T, Brewster AS, Alonso-Mori R, Hussein R, Zhang M, Douthit L, de Lichtenberg C, Cheah MH, et al. Structures of the intermediates of Kok's photosynthetic water oxidation clock. Nature. PMID 30405241 DOI: 10.1038/s41586-018-0681-2  1
2018 Brewster AS, Waterman DG, Parkhurst JM, Gildea RJ, Young ID, O'Riordan LJ, Yano J, Winter G, Evans G, Sauter NK. Improving signal strength in serial crystallography with DIALS geometry refinement. Acta Crystallographica. Section D, Structural Biology. 74: 877-894. PMID 30198898 DOI: 10.1107/S2059798318009191  1
2018 Ke TW, Brewster AS, Yu SX, Ushizima D, Yang C, Sauter NK. A convolutional neural network-based screening tool for X-ray serial crystallography. Journal of Synchrotron Radiation. 25: 655-670. PMID 29714177 DOI: 10.1107/S1600577518004873  1
2018 Winter G, Waterman DG, Parkhurst JM, Brewster AS, Gildea RJ, Gerstel M, Fuentes-Montero L, Vollmar M, Michels-Clark T, Young ID, Sauter NK, Evans G. DIALS: implementation and evaluation of a new integration package. Acta Crystallographica. Section D, Structural Biology. 74: 85-97. PMID 29533234 DOI: 10.1107/S2059798317017235  1
2018 Duyvesteyn HME, Ginn HM, Pietilä MK, Wagner A, Hattne J, Grimes JM, Hirvonen E, Evans G, Parsy ML, Sauter NK, Brewster AS, Huiskonen JT, Stuart DI, Sutton G, Bamford DH. Towards in cellulo virus crystallography. Scientific Reports. 8: 3771. PMID 29491457 DOI: 10.1038/s41598-018-21693-3  1
2017 Thomaston JL, Woldeyes RA, Nakane T, Yamashita A, Tanaka T, Koiwai K, Brewster AS, Barad BA, Chen Y, Lemmin T, Uervirojnangkoorn M, Arima T, Kobayashi J, Masuda T, Suzuki M, et al. XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction. Proceedings of the National Academy of Sciences of the United States of America. PMID 28835537 DOI: 10.1073/pnas.1705624114  1
2017 Roedig P, Ginn HM, Pakendorf T, Sutton G, Harlos K, Walter TS, Meyer J, Fischer P, Duman R, Vartiainen I, Reime B, Warmer M, Brewster AS, Young ID, Michels-Clark T, et al. High-speed fixed-target serial virus crystallography. Nature Methods. PMID 28628129 DOI: 10.1038/nmeth.4335  1
2017 Popp D, Loh ND, Zorgati H, Ghoshdastider U, Liow LT, Ivanova MI, Larsson M, DePonte DP, Bean R, Beyerlein KR, Gati C, Oberthuer D, Arnlund D, Brändén G, Berntsen P, ... ... Brewster AS, et al. Flow-aligned, single-shot fiber diffraction using a femtosecond X-ray free-electron laser. Cytoskeleton (Hoboken, N.J.). PMID 28574190 DOI: 10.1002/cm.21378  1
2017 Fuller FD, Gul S, Chatterjee R, Burgie ES, Young ID, Lebrette H, Srinivas V, Brewster AS, Michels-Clark T, Clinger JA, Andi B, Ibrahim M, Pastor E, de Lichtenberg C, Hussein R, et al. Drop-on-demand sample delivery for studying biocatalysts in action at X-ray free-electron lasers. Nature Methods. 14: 443-449. PMID 28250468 DOI: 10.1038/nmeth.4195  1
2016 Young ID, Ibrahim M, Chatterjee R, Gul S, Fuller FD, Koroidov S, Brewster AS, Tran R, Alonso-Mori R, Kroll T, Michels-Clark T, Laksmono H, Sierra RG, Stan CA, Hussein R, et al. Structure of photosystem II and substrate binding at room temperature. Nature. PMID 27871088 DOI: 10.1038/nature20161  1
2016 Lyubimov AY, Uervirojnangkoorn M, Zeldin OB, Zhou Q, Zhao M, Brewster AS, Michels-Clark T, Holton JM, Sauter NK, Weis WI, Brunger AT. Advances in X-ray free electron laser (XFEL) diffraction data processing applied to the crystal structure of the synaptotagmin-1 / SNARE complex. Elife. 5. PMID 27731796 DOI: 10.7554/eLife.18740  1
2016 Alonso-Mori R, Asa K, Bergmann U, Brewster AS, Chatterjee R, Cooper JK, Frei HM, Fuller FD, Goggins E, Gul S, Fukuzawa H, Iablonskyi D, Ibrahim M, Katayama T, Kroll T, et al. Towards characterization of photo-excited electron transfer and catalysis in natural and artificial systems using XFELs. Faraday Discussions. PMID 27711803 DOI: 10.1039/c6fd00084c  1
2016 Colletier JP, Sawaya MR, Gingery M, Rodriguez JA, Cascio D, Brewster AS, Michels-Clark T, Hice RH, Coquelle N, Boutet S, Williams GJ, Messerschmidt M, DePonte DP, Sierra RG, Laksmono H, et al. De novo phasing with X-ray laser reveals mosquito larvicide BinAB structure. Nature. PMID 27680699 DOI: 10.1038/nature19825  1
2016 Lyubimov AY, Uervirojnangkoorn M, Zeldin OB, Brewster AS, Murray TD, Sauter NK, Berger JM, Weis WI, Brunger AT. IOTA: integration optimization, triage and analysis tool for the processing of XFEL diffraction images. Journal of Applied Crystallography. 49: 1057-1064. PMID 27275148 DOI: 10.1107/S1600576716006683  1
2016 Sauter NK, Echols N, Adams PD, Zwart PH, Kern J, Brewster AS, Koroidov S, Alonso-Mori R, Zouni A, Messinger J, Bergmann U, Yano J, Yachandra VK. No observable conformational changes in PSII. Nature. 533: E1-2. PMID 27193689 DOI: 10.1038/nature17983  1
2016 Waterman DG, Winter G, Gildea RJ, Parkhurst JM, Brewster AS, Sauter NK, Evans G. Diffraction-geometry refinement in the DIALS framework. Acta Crystallographica. Section D, Structural Biology. 72: 558-75. PMID 27050135 DOI: 10.1107/S2059798316002187  1
2016 Van Benschoten AH, Liu L, Gonzalez A, Brewster AS, Sauter NK, Fraser JS, Wall ME. Measuring and modeling diffuse scattering in protein X-ray crystallography. Proceedings of the National Academy of Sciences of the United States of America. PMID 27035972 DOI: 10.1073/pnas.1524048113  1
2016 Roessler CG, Agarwal R, Allaire M, Alonso-Mori R, Andi B, Bachega JF, Bommer M, Brewster AS, Browne MC, Chatterjee R, Cho E, Cohen AE, Cowan M, Datwani S, Davidson VL, et al. Acoustic Injectors for Drop-On-Demand Serial Femtosecond Crystallography. Structure (London, England : 1993). PMID 26996959 DOI: 10.1016/j.str.2016.02.007  1
2016 Barnes CO, Kovaleva EG, Fu X, Stevenson HP, Brewster AS, DePonte DP, Baxter EL, Cohen AE, Calero G. Assessment of Microcrystal Quality by Transmission Electron Microscopy for Efficient Serial Femtosecond Crystallography. Archives of Biochemistry and Biophysics. PMID 26944553 DOI: 10.1016/j.abb.2016.02.011  1
2016 Van Benschoten AH, Liu L, Gonzalez A, Brewster AS, Sauter NK, Fraser JS, Wall ME. Measuring and modeling diffuse scattering in protein X-ray crystallography Proceedings of the National Academy of Sciences of the United States of America. 113: 4069-4074. DOI: 10.1073/pnas.1524048113/-/DCSupplemental  1
2015 Sierra RG, Gati C, Laksmono H, Dao EH, Gul S, Fuller F, Kern J, Chatterjee R, Ibrahim M, Brewster AS, Young ID, Michels-Clark T, Aquila A, Liang M, Hunter MS, et al. Concentric-flow electrokinetic injector enables serial crystallography of ribosome and photosystem II. Nature Methods. PMID 26619013 DOI: 10.1038/nmeth.3667  1
2015 Keedy DA, Kenner LR, Warkentin M, Woldeyes RA, Hopkins JB, Thompson MC, Brewster AS, Van Benschoten AH, Baxter EL, Uervirojnangkoorn M, McPhillips SE, Song J, Alonso-Mori R, Holton JM, Weis WI, et al. Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography. Elife. 4. PMID 26422513 DOI: 10.7554/eLife.07574  1
2015 Rodriguez JA, Ivanova MI, Sawaya MR, Cascio D, Reyes FE, Shi D, Sangwan S, Guenther EL, Johnson LM, Zhang M, Jiang L, Arbing MA, Nannenga BL, Hattne J, Whitelegge J, ... Brewster AS, et al. Structure of the toxic core of α-synuclein from invisible crystals. Nature. PMID 26352473 DOI: 10.1038/nature15368  1
2015 Zhou Q, Lai Y, Bacaj T, Zhao M, Lyubimov AY, Uervirojnangkoorn M, Zeldin OB, Brewster AS, Sauter NK, Cohen AE, Soltis SM, Alonso-Mori R, Chollet M, Lemke HT, Pfuetzner RA, et al. Architecture of the synaptotagmin-SNARE machinery for neuronal exocytosis. Nature. 525: 62-7. PMID 26280336 DOI: 10.1038/nature14975  1
2015 Könnecke M, Akeroyd FA, Bernstein HJ, Brewster AS, Campbell SI, Clausen B, Cottrell S, Hoffmann JU, Jemian PR, Männicke D, Osborn R, Peterson PF, Richter T, Suzuki J, Watts B, et al. The NeXus data format. Journal of Applied Crystallography. 48: 301-305. PMID 26089752 DOI: 10.1107/S1600576714027575  1
2015 Ginn HM, Brewster AS, Hattne J, Evans G, Wagner A, Grimes JM, Sauter NK, Sutton G, Stuart DI. A revised partiality model and post-refinement algorithm for X-ray free-electron laser data. Acta Crystallographica. Section D, Biological Crystallography. 71: 1400-10. PMID 26057680 DOI: 10.1107/S1399004715006902  1
2015 Coquelle N, Brewster AS, Kapp U, Shilova A, Weinhausen B, Burghammer M, Colletier JP. Raster-scanning serial protein crystallography using micro- and nano-focused synchrotron beams. Acta Crystallographica. Section D, Biological Crystallography. 71: 1184-96. PMID 25945583 DOI: 10.1107/S1399004715004514  1
2015 Lyubimov AY, Murray TD, Koehl A, Araci IE, Uervirojnangkoorn M, Zeldin OB, Cohen AE, Soltis SM, Baxter EL, Brewster AS, Sauter NK, Brunger AT, Berger JM. Capture and X-ray diffraction studies of protein microcrystals in a microfluidic trap array. Acta Crystallographica. Section D, Biological Crystallography. 71: 928-40. PMID 25849403 DOI: 10.1107/S1399004715002308  1
2015 Uervirojnangkoorn M, Zeldin OB, Lyubimov AY, Hattne J, Brewster AS, Sauter NK, Brunger AT, Weis WI. Enabling X-ray free electron laser crystallography for challenging biological systems from a limited number of crystals. Elife. 4. PMID 25781634 DOI: 10.7554/eLife.05421  1
2015 Ginn HM, Messerschmidt M, Ji X, Zhang H, Axford D, Gildea RJ, Winter G, Brewster AS, Hattne J, Wagner A, Grimes JM, Evans G, Sauter NK, Sutton G, Stuart DI. Structure of CPV17 polyhedrin determined by the improved analysis of serial femtosecond crystallographic data. Nature Communications. 6: 6435. PMID 25751308 DOI: 10.1038/ncomms7435  1
2015 Brewster AS, Sawaya MR, Rodriguez J, Hattne J, Echols N, McFarlane HT, Cascio D, Adams PD, Eisenberg DS, Sauter NK. Indexing amyloid peptide diffraction from serial femtosecond crystallography: new algorithms for sparse patterns. Acta Crystallographica. Section D, Biological Crystallography. 71: 357-66. PMID 25664747 DOI: 10.1107/S1399004714026145  1
2015 Zeldin OB, Brewster AS, Hattne J, Uervirojnangkoorn M, Lyubimov AY, Zhou Q, Zhao M, Weis WI, Sauter NK, Brunger AT. Data Exploration Toolkit for serial diffraction experiments. Acta Crystallographica. Section D, Biological Crystallography. 71: 352-6. PMID 25664746 DOI: 10.1107/S1399004714025875  1
2014 Sauter NK, Hattne J, Brewster AS, Echols N, Zwart PH, Adams PD. Improved crystal orientation and physical properties from single-shot XFEL stills. Acta Crystallographica. Section D, Biological Crystallography. 70: 3299-309. PMID 25478847 DOI: 10.1107/S1399004714024134  1
2014 Cohen AE, Soltis SM, González A, Aguila L, Alonso-Mori R, Barnes CO, Baxter EL, Brehmer W, Brewster AS, Brunger AT, Calero G, Chang JF, Chollet M, Ehrensberger P, Eriksson TL, et al. Goniometer-based femtosecond crystallography with X-ray free electron lasers. Proceedings of the National Academy of Sciences of the United States of America. 111: 17122-7. PMID 25362050 DOI: 10.1073/pnas.1418733111  1
2014 Parkhurst JM, Brewster AS, Fuentes-Montero L, Waterman DG, Hattne J, Ashton AW, Echols N, Evans G, Sauter NK, Winter G. dxtbx: the diffraction experiment toolbox. Journal of Applied Crystallography. 47: 1459-1465. PMID 25242914 DOI: 10.1107/S1600576714011996  1
2014 Sawaya MR, Cascio D, Gingery M, Rodriguez J, Goldschmidt L, Colletier JP, Messerschmidt MM, Boutet S, Koglin JE, Williams GJ, Brewster AS, Nass K, Hattne J, Botha S, Doak RB, et al. Protein crystal structure obtained at 2.9 Å resolution from injecting bacterial cells into an X-ray free-electron laser beam. Proceedings of the National Academy of Sciences of the United States of America. 111: 12769-74. PMID 25136092 DOI: 10.1073/pnas.1413456111  1
2014 Kern J, Tran R, Alonso-Mori R, Koroidov S, Echols N, Hattne J, Ibrahim M, Gul S, Laksmono H, Sierra RG, Gildea RJ, Han G, Hellmich J, Lassalle-Kaiser B, Chatterjee R, ... Brewster AS, et al. Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy. Nature Communications. 5: 4371. PMID 25006873 DOI: 10.1038/ncomms5371  1
2014 Hattne J, Echols N, Tran R, Kern J, Gildea RJ, Brewster AS, Alonso-Mori R, Glöckner C, Hellmich J, Laksmono H, Sierra RG, Lassalle-Kaiser B, Lampe A, Han G, Gul S, et al. Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers. Nature Methods. 11: 545-8. PMID 24633409 DOI: 10.1038/nmeth.2887  1
2010 Brewster AS, Slaymaker IM, Afif SA, Chen XS. Mutational analysis of an archaeal minichromosome maintenance protein exterior hairpin reveals critical residues for helicase activity and DNA binding. Bmc Molecular Biology. 11: 62. PMID 20716382 DOI: 10.1186/1471-2199-11-62  1
2010 Brewster AS, Chen XS. Insights into the MCM functional mechanism: lessons learned from the archaeal MCM complex. Critical Reviews in Biochemistry and Molecular Biology. 45: 243-56. PMID 20441442 DOI: 10.3109/10409238.2010.484836  1
2008 Brewster AS, Wang G, Yu X, Greenleaf WB, Carazo JM, Tjajadi M, Klein MG, Chen XS. Crystal structure of a near-full-length archaeal MCM: functional insights for an AAA+ hexameric helicase. Proceedings of the National Academy of Sciences of the United States of America. 105: 20191-6. PMID 19073923 DOI: 10.1073/pnas.0808037105  1
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