| Year |
Citation |
Score |
| 2024 |
Ontiveros N, Cooke E, Nawrocki EP, Triebel S, Marz M, Rivas E, Griffiths-Jones S, Petrov AI, Bateman A, Sweeney B. Rfam 15: RNA families database in 2025. Biorxiv : the Preprint Server For Biology. PMID 39372780 DOI: 10.1101/2024.09.23.614430 |
0.582 |
|
| 2022 |
Calvo L, Birgaoanu M, Pettini T, Ronshaugen M, Griffiths-Jones S. The embryonic transcriptome of Parhyale hawaiensis reveals different dynamics of microRNAs and mRNAs during the maternal-zygotic transition. Scientific Reports. 12: 174. PMID 34996916 DOI: 10.1038/s41598-021-03642-9 |
0.416 |
|
| 2020 |
Layton E, Fairhurst AM, Griffiths-Jones S, Grencis RK, Roberts IS. Regulatory RNAs: A Universal Language for Inter-Domain Communication. International Journal of Molecular Sciences. 21. PMID 33255483 DOI: 10.3390/ijms21238919 |
0.309 |
|
| 2020 |
Kalvari I, Nawrocki EP, Ontiveros-Palacios N, Argasinska J, Lamkiewicz K, Marz M, Griffiths-Jones S, Toffano-Nioche C, Gautheret D, Weinberg Z, Rivas E, Eddy SR, Finn RD, Bateman A, Petrov AI. Rfam 14: expanded coverage of metagenomic, viral and microRNA families. Nucleic Acids Research. PMID 33211869 DOI: 10.1093/nar/gkaa1047 |
0.554 |
|
| 2020 |
Minchington TG, Griffiths-Jones S, Papalopulu N. Dynamical gene regulatory networks are tuned by transcriptional autoregulation with microRNA feedback. Scientific Reports. 10: 12960. PMID 32737375 DOI: 10.1038/S41598-020-69791-5 |
0.325 |
|
| 2020 |
Fromm B, Keller A, Yang X, Friedlander MR, Peterson KJ, Griffiths-Jones S. Quo vadis microRNAs? Trends in Genetics : Tig. 36: 461-463. PMID 32544447 DOI: 10.1016/J.Tig.2020.03.007 |
0.378 |
|
| 2020 |
Griffiths R, Woods S, Cheng A, Wang P, Griffiths-Jones S, Ronshaugen M, Kimber SJ. The Transcription Factor-microRNA Regulatory Network during hESC-chondrogenesis. Scientific Reports. 10: 4744. PMID 32179818 DOI: 10.1038/S41598-020-61734-4 |
0.405 |
|
| 2020 |
Herndon N, Shelton J, Gerischer L, Ioannidis P, Ninova M, Dönitz J, Waterhouse RM, Liang C, Damm C, Siemanowski J, Kitzmann P, Ulrich J, Dippel S, Oberhofer G, Hu Y, ... ... Griffiths-Jones S, et al. Enhanced genome assembly and a new official gene set for Tribolium castaneum. Bmc Genomics. 21: 47. PMID 31937263 DOI: 10.1186/S12864-019-6394-6 |
0.447 |
|
| 2019 |
Sweeney BA, Petrov AI, Burkov B, Finn RD, Bateman A, Szymanski M, Karlowski WM, Gorodkin J, Seemann SE, Cannone JJ, Gutell RR, Fey P, Basu S, Kay SJE, Cochrane G, ... ... Griffiths-Jones S, et al. Corrigendum: ''RNAcentral : a hub of information for non-coding RNA sequences'' [Nucleic acids research, 47 (2019) D1, p. D221-D229] Nucleic Acids Research. 47. PMID 30535383 DOI: 10.1093/Nar/Gky1206 |
0.519 |
|
| 2019 |
Sweeney BA, Petrov AI, Burkov B, Finn RD, Bateman A, Szymanski M, Karlowski WM, Gorodkin J, Seemann SE, Cannone JJ, Gutell RR, Fey P, Basu S, Kay S, Cochrane G, ... ... Griffiths-Jones S, et al. RNAcentral: a hub of information for non-coding RNA sequences Nucleic Acids Research. 47. PMID 30395267 DOI: 10.1093/Nar/Gky1034 |
0.663 |
|
| 2018 |
Kozomara A, Birgaoanu M, Griffiths-Jones S. miRBase: from microRNA sequences to function. Nucleic Acids Research. PMID 30423142 DOI: 10.1093/Nar/Gky1141 |
0.515 |
|
| 2018 |
Parker S, Fraczek MG, Wu J, Shamsah S, Manousaki A, Dungrattanalert K, de Almeida RA, Invernizzi E, Burgis T, Omara W, Griffiths-Jones S, Delneri D, O'Keefe RT. Large-scale profiling of noncoding RNA function in yeast. Plos Genetics. 14: e1007253. PMID 29529031 DOI: 10.1371/Journal.Pgen.1007253 |
0.366 |
|
| 2017 |
D'Ario M, Griffiths-Jones S, Kim M. Small RNAs: Big Impact on Plant Development. Trends in Plant Science. PMID 29032035 DOI: 10.1016/J.Tplants.2017.09.009 |
0.384 |
|
| 2017 |
Ninova M, Griffiths-Jones S, Ronshaugen M. Abundant expression of somatic transposon-derived piRNAs throughout Tribolium castaneum embryogenesis. Genome Biology. 18: 184. PMID 28950880 DOI: 10.1186/S13059-017-1304-1 |
0.395 |
|
| 2017 |
Schwager EE, Sharma PP, Clarke T, Leite DJ, Wierschin T, Pechmann M, Akiyama-Oda Y, Esposito L, Bechsgaard J, Bilde T, Buffry AD, Chao H, Dinh H, Doddapaneni H, Dugan S, ... ... Griffiths-Jones S, et al. The house spider genome reveals an ancient whole-genome duplication during arachnid evolution. Bmc Biology. 15: 62. PMID 28756775 DOI: 10.1186/S12915-017-0399-X |
0.388 |
|
| 2017 |
Petrov AI, Kay SJE, Kalvari I, Howe KL, Gray KA, Bruford EA, Kersey PJ, Cochrane G, Finn RD, Bateman A, Kozomara A, Griffiths-Jones S, Frankish A, Zwieb CW, et al. RNAcentral: a comprehensive database of non-coding RNA sequences. Nucleic Acids Research. 45: D128-D134. PMID 27794554 DOI: 10.1093/Nar/Gkw1008 |
0.639 |
|
| 2016 |
Jenkinson EM, Rodero MP, Kasher PR, Uggenti C, Oojageer A, Goosey LC, Rose Y, Kershaw CJ, Urquhart JE, Williams SG, Bhaskar SS, O'Sullivan J, Baerlocher GM, Haubitz M, Aubert G, ... ... Griffiths-Jones S, et al. Mutations in SNORD118 cause the cerebral microangiopathy leukoencephalopathy with calcifications and cysts. Nature Genetics. PMID 27571260 DOI: 10.1038/Ng.3661 |
0.326 |
|
| 2016 |
Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP. Pervasive microRNA duplication in chelicerates: insights from the embryonic microRNA repertoire of the spider Parasteatoda tepidariorum. Genome Biology and Evolution. PMID 27324919 DOI: 10.1093/Gbe/Evw143 |
0.5 |
|
| 2016 |
Hooks KB, Naseeb S, Parker S, Griffiths-Jones S, Delneri D. Novel Intronic RNA Structures Contribute to Maintenance of Phenotype in Saccharomyces cerevisiae. Genetics. PMID 27194751 DOI: 10.1534/Genetics.115.185363 |
0.45 |
|
| 2015 |
Ninova M, Ronshaugen M, Griffiths-Jones S. MicroRNA evolution, expression and function during short germband development in Tribolium castaneum. Genome Research. PMID 26518483 DOI: 10.1101/Gr.193367.115 |
0.491 |
|
| 2015 |
Gardner PP, Fasold M, Burge SW, Ninova M, Hertel J, Kehr S, Steeves TE, Griffiths-Jones S, Stadler PF. Conservation and losses of non-coding RNAs in avian genomes. Plos One. 10: e0121797. PMID 25822729 DOI: 10.1371/Journal.Pone.0121797 |
0.495 |
|
| 2015 |
Bleazard T, Lamb JA, Griffiths-Jones S. Bias in microRNA functional enrichment analysis. Bioinformatics (Oxford, England). 31: 1592-8. PMID 25609791 DOI: 10.1093/Bioinformatics/Btv023 |
0.358 |
|
| 2015 |
Petrov AI, Kay SJE, Gibson R, Kulesha E, Staines D, Bruford EA, Wright MW, Burge S, Finn RD, Kersey PJ, Cochrane G, Bateman A, Griffiths-Jones S, Harrow J, et al. RNAcentral: an international database of ncRNA sequences. Nucleic Acids Research. 43: D123-9. PMID 25352543 DOI: 10.1093/Nar/Gku991 |
0.633 |
|
| 2015 |
Petrov AI, Kay SJE, Gibson R, Kulesha E, Staines D, Bruford EA, Wright MW, Burge S, Finn RD, Kersey PJ, Cochrane G, Bateman A, Griffiths-Jones S, Harrow J, Chan PP, et al. RNAcentral: An international database of ncRNA sequences Nucleic Acids Research. 43: D123-D129. DOI: 10.1093l/narlgku991 |
0.525 |
|
| 2015 |
Petrov AI, Kay SJE, Gibson R, Kulesha E, Staines D, Bruford EA, Wright MW, Burge S, Finn RD, Kersey PJ, Cochrane G, Bateman A, Griffiths-Jones S, Harrow J, Chan PP, et al. RNAcentral: An international database of ncRNA sequences Nucleic Acids Research. 43: D123-D129. DOI: 10.1093/nar/gku991 |
0.525 |
|
| 2014 |
Chipman AD, Ferrier DE, Brena C, Qu J, Hughes DS, Schröder R, Torres-Oliva M, Znassi N, Jiang H, Almeida FC, Alonso CR, Apostolou Z, Aqrawi P, Arthur W, Barna JC, ... ... Griffiths-Jones S, et al. The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima. Plos Biology. 12: e1002005. PMID 25423365 DOI: 10.1371/Journal.Pbio.1002005 |
0.448 |
|
| 2014 |
Hooks KB, Delneri D, Griffiths-Jones S. Intron evolution in Saccharomycetaceae. Genome Biology and Evolution. 6: 2543-56. PMID 25364803 DOI: 10.1093/Gbe/Evu196 |
0.439 |
|
| 2014 |
Ninova M, Ronshaugen M, Griffiths-Jones S. Conserved temporal patterns of microRNA expression in Drosophila support a developmental hourglass model. Genome Biology and Evolution. 6: 2459-67. PMID 25169982 DOI: 10.1093/Gbe/Evu183 |
0.415 |
|
| 2014 |
Kozomara A, Hunt S, Ninova M, Griffiths-Jones S, Ronshaugen M. Target repression induced by endogenous microRNAs: large differences, small effects. Plos One. 9: e104286. PMID 25141277 DOI: 10.1371/Journal.Pone.0104286 |
0.389 |
|
| 2014 |
Arthanari Y, Heintzen C, Griffiths-Jones S, Crosthwaite SK. Natural antisense transcripts and long non-coding RNA in Neurospora crassa. Plos One. 9: e91353. PMID 24621812 DOI: 10.1371/Journal.Pone.0091353 |
0.382 |
|
| 2014 |
Ninova M, Ronshaugen M, Griffiths-Jones S. Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis. Rna (New York, N.Y.). 20: 360-72. PMID 24448446 DOI: 10.1261/Rna.041657.113 |
0.46 |
|
| 2014 |
Rogers HH, Griffiths-Jones S. tRNA anticodon shifts in eukaryotic genomes. Rna (New York, N.Y.). 20: 269-81. PMID 24442610 DOI: 10.1261/Rna.041681.113 |
0.405 |
|
| 2014 |
Kozomara A, Griffiths-Jones S. miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Research. 42: D68-73. PMID 24275495 DOI: 10.1093/Nar/Gkt1181 |
0.506 |
|
| 2013 |
Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M. Sex-biased expression of microRNAs in Schistosoma mansoni. Plos Neglected Tropical Diseases. 7: e2402. PMID 24069470 DOI: 10.1371/Journal.Pntd.0002402 |
0.605 |
|
| 2013 |
Marco A, Ninova M, Griffiths-Jones S. Multiple products from microRNA transcripts. Biochemical Society Transactions. 41: 850-4. PMID 23863143 DOI: 10.1042/Bst20130035 |
0.645 |
|
| 2013 |
Marco A, Ninova M, Ronshaugen M, Griffiths-Jones S. Clusters of microRNAs emerge by new hairpins in existing transcripts. Nucleic Acids Research. 41: 7745-52. PMID 23775791 DOI: 10.1093/Nar/Gkt534 |
0.6 |
|
| 2013 |
Hui JH, Marco A, Hunt S, Melling J, Griffiths-Jones S, Ronshaugen M. Structure, evolution and function of the bi-directionally transcribed iab-4/iab-8 microRNA locus in arthropods. Nucleic Acids Research. 41: 3352-61. PMID 23335784 DOI: 10.1093/Nar/Gks1445 |
0.589 |
|
| 2012 |
Marco A, Macpherson JI, Ronshaugen M, Griffiths-Jones S. MicroRNAs from the same precursor have different targeting properties. Silence. 3: 8. PMID 23016695 DOI: 10.1186/1758-907X-3-8 |
0.65 |
|
| 2012 |
Sorefan K, Pais H, Hall AE, Kozomara A, Griffiths-Jones S, Moulton V, Dalmay T. Reducing ligation bias of small RNAs in libraries for next generation sequencing. Silence. 3: 4. PMID 22647250 DOI: 10.1186/1758-907X-3-4 |
0.479 |
|
| 2012 |
Rogers HH, Griffiths-Jones S. Mitochondrial pseudogenes in the nuclear genomes of Drosophila. Plos One. 7: e32593. PMID 22412894 DOI: 10.1371/Journal.Pone.0032593 |
0.353 |
|
| 2012 |
Marco A, Hooks K, Griffiths-Jones S. Evolution and function of the extended miR-2 microRNA family. Rna Biology. 9: 242-8. PMID 22336713 DOI: 10.4161/Rna.19160 |
0.651 |
|
| 2012 |
Marco A, Griffiths-Jones S. Detection of microRNAs in color space. Bioinformatics (Oxford, England). 28: 318-23. PMID 22171334 DOI: 10.1093/Bioinformatics/Btr686 |
0.656 |
|
| 2011 |
Bateman A, Agrawal S, Birney E, Bruford EA, Bujnicki JM, Cochrane G, Cole JR, Dinger ME, Enright AJ, Gardner PP, Gautheret D, Griffiths-Jones S, Harrow J, Herrero J, Holmes IH, et al. RNAcentral: A vision for an international database of RNA sequences. Rna (New York, N.Y.). 17: 1941-6. PMID 21940779 DOI: 10.1261/Rna.2750811 |
0.588 |
|
| 2011 |
Gunaratne PH, Lin YC, Benham AL, Drnevich J, Coarfa C, Tennakoon JB, Creighton CJ, Kim JH, Milosavljevic A, Watson M, Griffiths-Jones S, Clayton DF. Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain. Bmc Genomics. 12: 277. PMID 21627805 DOI: 10.1186/1471-2164-12-277 |
0.392 |
|
| 2011 |
Hooks KB, Griffiths-Jones S. Conserved RNA structures in the non-canonical Hac1/Xbp1 intron. Rna Biology. 8: 552-6. PMID 21593604 DOI: 10.4161/Rna.8.4.15396 |
0.432 |
|
| 2011 |
Griffiths-Jones S, Hui JH, Marco A, Ronshaugen M. MicroRNA evolution by arm switching. Embo Reports. 12: 172-7. PMID 21212805 DOI: 10.1038/Embor.2010.191 |
0.645 |
|
| 2011 |
Gardner PP, Daub J, Tate J, Moore BL, Osuch IH, Griffiths-Jones S, Finn RD, Nawrocki EP, Kolbe DL, Eddy SR, Bateman A. Rfam: Wikipedia, clans and the "decimal" release. Nucleic Acids Research. 39: D141-5. PMID 21062808 DOI: 10.1093/Nar/Gkq1129 |
0.602 |
|
| 2011 |
Kozomara A, Griffiths-Jones S. miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Research. 39: D152-7. PMID 21037258 DOI: 10.1093/Nar/Gkq1027 |
0.513 |
|
| 2010 |
Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S. Functional shifts in insect microRNA evolution. Genome Biology and Evolution. 2: 686-96. PMID 20817720 DOI: 10.1093/Gbe/Evq053 |
0.653 |
|
| 2010 |
Rogers HH, Bergman CM, Griffiths-Jones S. The evolution of tRNA genes in Drosophila. Genome Biology and Evolution. 2: 467-77. PMID 20624748 DOI: 10.1093/Gbe/Evq034 |
0.613 |
|
| 2010 |
Griffiths-Jones S. miRBase: microRNA sequences and annotation. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 12.9.1-10. PMID 20205188 DOI: 10.1002/0471250953.bi1209s29 |
0.361 |
|
| 2009 |
Gardner PP, Daub J, Tate JG, Nawrocki EP, Kolbe DL, Lindgreen S, Wilkinson AC, Finn RD, Griffiths-Jones S, Eddy SR, Bateman A. Rfam: updates to the RNA families database. Nucleic Acids Research. 37: D136-40. PMID 18953034 DOI: 10.1093/Nar/Gkn766 |
0.647 |
|
| 2009 |
Mimouni NK, Lyngsø RB, Griffiths-Jones S, Hein J. An analysis of structural influences on selection in RNA genes. Molecular Biology and Evolution. 26: 209-16. PMID 18948299 DOI: 10.1093/Molbev/Msn240 |
0.436 |
|
| 2009 |
Hui JH, Griffiths-Jones S, Ronshaugen M. 01-P017 The evolution of miR-10 family function in animal development Mechanisms of Development. 126: S56. DOI: 10.1016/J.Mod.2009.06.018 |
0.31 |
|
| 2008 |
Meyers BC, Axtell MJ, Bartel B, Bartel DP, Baulcombe D, Bowman JL, Cao X, Carrington JC, Chen X, Green PJ, Griffiths-Jones S, Jacobsen SE, Mallory AC, Martienssen RA, Poethig RS, et al. Criteria for annotation of plant MicroRNAs. The Plant Cell. 20: 3186-90. PMID 19074682 DOI: 10.1105/Tpc.108.064311 |
0.44 |
|
| 2008 |
Saini HK, Enright AJ, Griffiths-Jones S. Annotation of mammalian primary microRNAs. Bmc Genomics. 9: 564. PMID 19038026 DOI: 10.1186/1471-2164-9-564 |
0.398 |
|
| 2008 |
Daub J, Gardner PP, Tate J, Ramsköld D, Manske M, Scott WG, Weinberg Z, Griffiths-Jones S, Bateman A. The RNA WikiProject: community annotation of RNA families. Rna (New York, N.Y.). 14: 2462-4. PMID 18945806 DOI: 10.1261/Rna.1200508 |
0.571 |
|
| 2008 |
Smits G, Mungall AJ, Griffiths-Jones S, Smith P, Beury D, Matthews L, Rogers J, Pask AJ, Shaw G, VandeBerg JL, McCarrey JR, Renfree MB, Reik W, Dunham I. Conservation of the H19 noncoding RNA and H19-IGF2 imprinting mechanism in therians. Nature Genetics. 40: 971-6. PMID 18587395 DOI: 10.1038/Ng.168 |
0.388 |
|
| 2008 |
Mourier T, Carret C, Kyes S, Christodoulou Z, Gardner PP, Jeffares DC, Pinches R, Barrell B, Berriman M, Griffiths-Jones S, Ivens A, Newbold C, Pain A. Genome-wide discovery and verification of novel structured RNAs in Plasmodium falciparum. Genome Research. 18: 281-92. PMID 18096748 DOI: 10.1101/Gr.6836108 |
0.418 |
|
| 2008 |
Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ. miRBase: tools for microRNA genomics. Nucleic Acids Research. 36: D154-8. PMID 17991681 DOI: 10.1093/Nar/Gkm952 |
0.463 |
|
| 2007 |
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Griffiths-Jones S, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341 |
0.672 |
|
| 2007 |
Saini HK, Griffiths-Jones S, Enright AJ. Genomic analysis of human microRNA transcripts. Proceedings of the National Academy of Sciences of the United States of America. 104: 17719-24. PMID 17965236 DOI: 10.1073/Pnas.0703890104 |
0.436 |
|
| 2007 |
Griffiths-Jones S. Annotating noncoding RNA genes. Annual Review of Genomics and Human Genetics. 8: 279-98. PMID 17506659 DOI: 10.1146/Annurev.Genom.8.080706.092419 |
0.471 |
|
| 2007 |
Enright AJ, Griffiths-Jones S. miRBase: A database of microRNA sequences, targets and nomenclature Micrornas: From Basic Science to Disease Biology. 157-171. DOI: 10.1017/CBO9780511541766.014 |
0.323 |
|
| 2006 |
Griffiths-Jones S. miRBase: the microRNA sequence database. Methods in Molecular Biology (Clifton, N.J.). 342: 129-38. PMID 16957372 DOI: 10.1385/1-59745-123-1:129 |
0.472 |
|
| 2006 |
Gregory SG, Barlow KF, McLay KE, Kaul R, Swarbreck D, Dunham A, Scott CE, Howe KL, Woodfine K, Spencer CC, Jones MC, Gillson C, Searle S, Zhou Y, Kokocinski F, ... ... Griffiths-Jones S, et al. The DNA sequence and biological annotation of human chromosome 1. Nature. 441: 315-21. PMID 16710414 DOI: 10.1038/Nature04727 |
0.386 |
|
| 2006 |
Finn RD, Mistry J, Schuster-Böckler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, Durbin R, Eddy SR, Sonnhammer EL, Bateman A. Pfam: clans, web tools and services. Nucleic Acids Research. 34: D247-51. PMID 16381856 DOI: 10.1093/Nar/Gkj149 |
0.519 |
|
| 2006 |
Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ. miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Research. 34: D140-4. PMID 16381832 DOI: 10.1093/Nar/Gkj112 |
0.63 |
|
| 2005 |
Griffiths-Jones S. Annotating non-coding RNAs with Rfam. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 12.5. PMID 18428745 DOI: 10.1002/0471250953.bi1205s9 |
0.41 |
|
| 2005 |
Stricklin SL, Griffiths-Jones S, Eddy SR. C. elegans noncoding RNA genes. Wormbook : the Online Review of C. Elegans Biology. 1-7. PMID 18023116 DOI: 10.1895/Wormbook.1.1.1 |
0.447 |
|
| 2005 |
Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, Lee SI, Baştürkmen M, Spevak CC, Clutterbuck J, Kapitonov V, Jurka J, Scazzocchio C, Farman M, Butler J, ... ... Griffiths-Jones S, et al. Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae. Nature. 438: 1105-15. PMID 16372000 DOI: 10.1038/Nature04341 |
0.462 |
|
| 2005 |
Pain A, Renauld H, Berriman M, Murphy L, Yeats CA, Weir W, Kerhornou A, Aslett M, Bishop R, Bouchier C, Cochet M, Coulson RM, Cronin A, de Villiers EP, Fraser A, ... ... Griffiths-Jones S, et al. Genome of the host-cell transforming parasite Theileria annulata compared with T. parva. Science (New York, N.Y.). 309: 131-3. PMID 15994557 DOI: 10.1126/Science.1110418 |
0.373 |
|
| 2005 |
Mourier T, Pain A, Barrell B, Griffiths-Jones S. A selenocysteine tRNA and SECIS element in Plasmodium falciparum. Rna (New York, N.Y.). 11: 119-22. PMID 15659354 DOI: 10.1261/Rna.7185605 |
0.388 |
|
| 2005 |
Jenkins JA, Griffiths-Jones S, Shewry PR, Breiteneder H, Mills EN. Structural relatedness of plant food allergens with specific reference to cross-reactive allergens: an in silico analysis. The Journal of Allergy and Clinical Immunology. 115: 163-70. PMID 15637564 DOI: 10.1016/J.Jaci.2004.10.026 |
0.366 |
|
| 2005 |
Griffiths-Jones S, Moxon S, Marshall M, Khanna A, Eddy SR, Bateman A. Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Research. 33: D121-4. PMID 15608160 DOI: 10.1093/Nar/Gki081 |
0.64 |
|
| 2005 |
Hubbard SJ, Grafham DV, Beattie KJ, Overton IM, McLaren SR, Croning MD, Boardman PE, Bonfield JK, Burnside J, Davies RM, Farrell ER, Francis MD, Griffiths-Jones S, Humphray SJ, Hyland C, et al. Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags. Genome Research. 15: 174-83. PMID 15590942 DOI: 10.1101/Gr.3011405 |
0.492 |
|
| 2005 |
Griffiths-Jones S. RALEE--RNA ALignment editor in Emacs. Bioinformatics (Oxford, England). 21: 257-9. PMID 15377506 DOI: 10.1093/Bioinformatics/Bth489 |
0.434 |
|
| 2004 |
Rodriguez A, Griffiths-Jones S, Ashurst JL, Bradley A. Identification of mammalian microRNA host genes and transcription units. Genome Research. 14: 1902-10. PMID 15364901 DOI: 10.1101/Gr.2722704 |
0.45 |
|
| 2004 |
Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths-Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer EL, Studholme DJ, Yeats C, Eddy SR. The Pfam protein families database. Nucleic Acids Research. 32: D138-41. PMID 14681378 DOI: 10.1093/nar/gkh121 |
0.476 |
|
| 2004 |
Griffiths-Jones S. The microRNA Registry. Nucleic Acids Research. 32: D109-11. PMID 14681370 DOI: 10.1093/Nar/Gkh023 |
0.421 |
|
| 2003 |
Finn R, Griffiths-Jones S, Bateman A. Identifying protein domains with the Pfam database. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 2.5. PMID 18428696 DOI: 10.1002/0471250953.Bi0205S01 |
0.565 |
|
| 2003 |
Stein LD, Bao Z, Blasiar D, Blumenthal T, Brent MR, Chen N, Chinwalla A, Clarke L, Clee C, Coghlan A, Coulson A, D'Eustachio P, Fitch DH, Fulton LA, Fulton RE, ... Griffiths-Jones S, et al. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Plos Biology. 1: E45. PMID 14624247 DOI: 10.1371/Journal.Pbio.0000045 |
0.38 |
|
| 2003 |
Ambros V, Bartel B, Bartel DP, Burge CB, Carrington JC, Chen X, Dreyfuss G, Eddy SR, Griffiths-Jones S, Marshall M, Matzke M, Ruvkun G, Tuschl T. A uniform system for microRNA annotation. Rna (New York, N.Y.). 9: 277-9. PMID 12592000 DOI: 10.1261/Rna.2183803 |
0.438 |
|
| 2003 |
Griffiths-Jones S, Bateman A, Marshall M, Khanna A, Eddy SR. Rfam: an RNA family database. Nucleic Acids Research. 31: 439-41. PMID 12520045 DOI: 10.1093/Nar/Gkg006 |
0.64 |
|
| 2003 |
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, ... ... Griffiths-Jones S, et al. The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Research. 31: 315-8. PMID 12520011 DOI: 10.1093/Nar/Gkg046 |
0.556 |
|
| 2002 |
Griffiths-Jones S, Bateman A. The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs. Bioinformatics (Oxford, England). 18: 1243-9. PMID 12217916 DOI: 10.1093/Bioinformatics/18.9.1243 |
0.578 |
|
| 2002 |
Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, Eddy SR, Griffiths-Jones S, Howe KL, Marshall M, Sonnhammer EL. The Pfam protein families database. Nucleic Acids Research. 30: 276-80. PMID 11752314 |
0.528 |
|
| Show low-probability matches. |