James Chienan Liao, Ph.D. - Publications

Affiliations: 
Biology University of Florida, Gainesville, Gainesville, FL, United States 
Area:
locomotion, lateral line
Website:
http://liaolab.com/

63 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Lunsford ET, Bobkov YV, Ray BC, Liao JC, Strother JA. Anion efflux mediates transduction in the hair cells of the zebrafish lateral line. Proceedings of the National Academy of Sciences of the United States of America. 120: e2315515120. PMID 38117855 DOI: 10.1073/pnas.2315515120  0.768
2022 Lunsford ET, Paz A, Keene AC, Liao JC. Evolutionary convergence of a neural mechanism in the cavefish lateral line system. Elife. 11. PMID 35708234 DOI: 10.7554/eLife.77387  0.775
2022 Akanyeti O, Di Santo V, Goerig E, Wainwright DK, Liao JC, Castro-Santos TR, Lauder GV. Fish-inspired segment models for undulatory steady swimming. Bioinspiration & Biomimetics. PMID 35487201 DOI: 10.1088/1748-3190/ac6bd6  0.762
2021 Di Santo V, Goerig E, Wainwright DK, Akanyeti O, Liao JC, Castro-Santos T, Lauder GV. Convergence of undulatory swimming kinematics across a diversity of fishes. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34853171 DOI: 10.1073/pnas.2113206118  0.765
2021 Skandalis DA, Lunsford ET, Liao JC. Corollary discharge enables proprioception from lateral line sensory feedback. Plos Biology. 19: e3001420. PMID 34634044 DOI: 10.1371/journal.pbio.3001420  0.777
2021 Schwab F, Lunsford ET, Hong T, Wiesemüller F, Kovac M, Park YL, Akanyeti O, Liao JC, Jusufi A. Body Caudal Undulation measured by Soft Sensors and emulated by Soft Artificial Muscles. Integrative and Comparative Biology. PMID 34415009 DOI: 10.1093/icb/icab182  0.768
2021 Lunsford ET, Liao JC. Activity of Posterior Lateral Line Afferent Neurons during Swimming in Zebrafish. Journal of Visualized Experiments : Jove. PMID 33645560 DOI: 10.3791/62233  0.777
2020 Johansen JL, Akanyeti O, Liao JC. Oxygen consumption of drift-feeding rainbow trout: the energetic tradeoff between locomotion and feeding in flow. The Journal of Experimental Biology. 223. PMID 32591340 DOI: 10.1242/Jeb.220962  0.709
2019 Lunsford ET, Skandalis DA, Liao JC. Efferent modulation of spontaneous lateral line activity during and after zebrafish motor commands. Journal of Neurophysiology. PMID 31642405 DOI: 10.1152/Jn.00594.2019  0.775
2019 McHenry MJ, Johansen JL, Soto AP, Free BA, Paley DA, Liao JC. The pursuit strategy of predatory bluefish ( Pomatomus saltatrix). Proceedings. Biological Sciences. 286: 20182934. PMID 30963832 DOI: 10.1098/Rspb.2018.2934  0.662
2019 Nishiguchi H, Hiasa N, Uebayashi K, Liao J, Shimizu H, Matsuda F. Transomics data-driven, ensemble kinetic modeling for system-level understanding and engineering of the cyanobacteria central metabolism. Metabolic Engineering. PMID 30633975 DOI: 10.1016/J.Ymben.2019.01.004  0.308
2018 Yanagitsuru YR, Akanyeti O, Liao JC. Head width influences flow sensing by the lateral line canal system in fishes. The Journal of Experimental Biology. PMID 30194249 DOI: 10.1242/Jeb.180877  0.775
2018 Pontrelli S, Fricke RCB, Sakurai SSM, Putri SP, Fitz-Gibbon S, Chung M, Wu HY, Chen YJ, Pellegrini M, Fukusaki E, Liao JC. Directed strain evolution restructures metabolism for 1-butanol production in minimal media. Metabolic Engineering. PMID 30107263 DOI: 10.1016/J.Ymben.2018.08.004  0.313
2018 Haehnel-Taguchi M, Akanyeti O, Liao JC. Behavior, Electrophysiology and Robotics Experiments to Study Lateral Line Sensing in Fishes. Integrative and Comparative Biology. PMID 29982706 DOI: 10.1093/Icb/Icy066  0.721
2017 Liao JC, Akanyeti O. Fish Swimming in a Kármán Vortex Street: Kinematics, Sensory Biology and Energetics. Marine Technology Society Journal. 51: 48-55. PMID 30631214 DOI: 10.4031/Mtsj.51.5.8  0.731
2017 Akanyeti O, Putney J, Yanagitsuru YR, Lauder GV, Stewart WJ, Liao JC. Accelerating fishes increase propulsive efficiency by modulating vortex ring geometry. Proceedings of the National Academy of Sciences of the United States of America. PMID 29229818 DOI: 10.1073/Pnas.1705968115  0.771
2017 Stewart WJ, Johansen JL, Liao JC. A non-toxic dose of cobalt chloride blocks hair cells of the zebrafish lateral line. Hearing Research. 350: 17-21. PMID 28412580 DOI: 10.1016/J.Heares.2017.04.001  0.313
2017 Ohtake T, Pontrelli S, Laviña WA, Liao JC, Putri SP, Fukusaki E. Metabolomics-driven approach to solving a CoA imbalance for improved 1-butanol production in Escherichia coli. Metabolic Engineering. PMID 28400330 DOI: 10.1016/J.Ymben.2017.04.003  0.324
2017 Lafontaine Rivera JG, Theisen MK, Chen PW, Liao JC. Kinetically accessible yield (KAY) for redirection of metabolism to produce exo-metabolites. Metabolic Engineering. PMID 28389394 DOI: 10.1016/J.Ymben.2017.03.011  0.311
2017 Liu G, Ren Y, Dong H, Akanyeti O, Liao JC, Lauder GV. Computational analysis of vortex dynamics and performance enhancement due to body–fin and fin–fin interactions in fish-like locomotion Journal of Fluid Mechanics. 829: 65-88. DOI: 10.1017/Jfm.2017.533  0.769
2016 Stewart WJ, Tian FB, Akanyeti O, Walker CJ, Liao JC. Refuging rainbow trout selectively exploit flows behind tandem cylinders. The Journal of Experimental Biology. 219: 2182-91. PMID 27445401 DOI: 10.1242/Jeb.140475  0.71
2016 Lv C, Stewart WJ, Akanyeti O, Frederick C, Zhu J, Santos-Sacchi J, Sheets L, Liao JC, Zenisek D. Synaptic Ribbons Require Ribeye for Electron Density, Proper Synaptic Localization, and Recruitment of Calcium Channels. Cell Reports. PMID 27292637 DOI: 10.1016/J.Celrep.2016.05.045  0.669
2016 Akanyeti O, Thornycroft PJ, Lauder GV, Yanagitsuru YR, Peterson AN, Liao JC. Fish optimize sensing and respiration during undulatory swimming. Nature Communications. 7: 11044. PMID 27009352 DOI: 10.1038/Ncomms11044  0.765
2016 Noguchi S, Putri SP, Lan EI, Laviña WA, Dempo Y, Bamba T, Liao JC, Fukusaki E. Quantitative target analysis and kinetic profiling of acyl-CoAs reveal the rate-limiting step in cyanobacterial 1-butanol production. Metabolomics : Official Journal of the Metabolomic Society. 12: 26. PMID 26766939 DOI: 10.1007/S11306-015-0940-2  0.314
2015 Lafontaine Rivera JG, Lee Y, Liao JC. An entropy-like index of bifurcational robustness for metabolic systems. Integrative Biology : Quantitative Biosciences From Nano to Macro. PMID 25855352 DOI: 10.1039/C4Ib00257A  0.309
2015 Ristroph L, Liao JC, Zhang J. Lateral line layout correlates with the differential hydrodynamic pressure on swimming fish. Physical Review Letters. 114: 018102. PMID 25615505 DOI: 10.1103/Physrevlett.114.018102  0.324
2015 Levi R, Akanyeti O, Ballo A, Liao JC. Frequency response properties of primary afferent neurons in the posterior lateral line system of larval zebrafish. Journal of Neurophysiology. 113: 657-68. PMID 25355959 DOI: 10.1152/Jn.00414.2014  0.693
2014 Lee Y, Lafontaine Rivera JG, Liao JC. Ensemble Modeling for Robustness Analysis in engineering non-native metabolic pathways. Metabolic Engineering. 25: 63-71. PMID 24972370 DOI: 10.1016/J.Ymben.2014.06.006  0.314
2014 Haehnel-Taguchi M, Akanyeti O, Liao JC. Afferent and motoneuron activity in response to single neuromast stimulation in the posterior lateral line of larval zebrafish. Journal of Neurophysiology. 112: 1329-39. PMID 24966296 DOI: 10.1152/Jn.00274.2014  0.719
2013 Akanyeti O, Liao JC. A kinematic model of Kármán gaiting in rainbow trout. The Journal of Experimental Biology. 216: 4666-77. PMID 24115054 DOI: 10.1242/Jeb.093245  0.729
2013 Minty JJ, Singer ME, Scholz SA, Bae CH, Ahn JH, Foster CE, Liao JC, Lin XN. Design and characterization of synthetic fungal-bacterial consortia for direct production of isobutanol from cellulosic biomass. Proceedings of the National Academy of Sciences of the United States of America. 110: 14592-7. PMID 23959872 DOI: 10.1073/Pnas.1218447110  0.326
2013 Akanyeti O, Liao JC. The effect of flow speed and body size on Kármán gait kinematics in rainbow trout. The Journal of Experimental Biology. 216: 3442-9. PMID 23737556 DOI: 10.1242/Jeb.087502  0.719
2013 Zomorrodi AR, Lafontaine Rivera JG, Liao JC, Maranas CD. Optimization-driven identification of genetic perturbations accelerates the convergence of model parameters in ensemble modeling of metabolic networks. Biotechnology Journal. 8: 1090-104. PMID 23450699 DOI: 10.1002/Biot.201200270  0.305
2012 Olszewski J, Haehnel M, Taguchi M, Liao JC. Zebrafish larvae exhibit rheotaxis and can escape a continuous suction source using their lateral line. Plos One. 7: e36661. PMID 22570735 DOI: 10.1371/Journal.Pone.0036661  0.354
2012 Lan EI, Liao JC. ATP drives direct photosynthetic production of 1-butanol in cyanobacteria. Proceedings of the National Academy of Sciences of the United States of America. 109: 6018-23. PMID 22474341 DOI: 10.1073/Pnas.1200074109  0.302
2012 Liao JC, Haehnel M. Physiology of afferent neurons in larval zebrafish provides a functional framework for lateral line somatotopy. Journal of Neurophysiology. 107: 2615-23. PMID 22338025 DOI: 10.1152/Jn.01108.2011  0.331
2012 Haehnel M, Taguchi M, Liao JC. Heterogeneity and dynamics of lateral line afferent innervation during development in zebrafish (Danio rerio). The Journal of Comparative Neurology. 520: 1376-86. PMID 22102005 DOI: 10.1002/Cne.22798  0.334
2012 Liao JC, Hou SY, Chao YP. Pathway analysis, engineering, and physiological considerations for redirecting central metabolism. Biotechnology and Bioengineering. 52: 129-40. PMID 18629859 DOI: 10.1002/(Sici)1097-0290(19961005)52:1<129::Aid-Bit13>3.0.Co;2-J  0.317
2012 Patnaik R, Spitzer RG, Liao JC. Pathway engineering for production of aromatics in Escherichia coli: Confirmation of stoichiometric analysis by independent modulation of AroG, TktA, and Pps activities. Biotechnology and Bioengineering. 46: 361-70. PMID 18623323 DOI: 10.1002/Bit.260460409  0.303
2012 Lacey RWJ, Neary VS, Liao JC, Enders EC, Tritico HM. The ipos framework: Linking fish swimming performance in altered flows from laboratory experiments to rivers River Research and Applications. 28: 429-443. DOI: 10.1002/Rra.1584  0.32
2011 Tian FB, Luo H, Zhu L, Liao JC, Lu XY. An efficient immersed boundary-lattice Boltzmann method for the hydrodynamic interaction of elastic filaments. Journal of Computational Physics. 230: 7266-7283. PMID 23564971 DOI: 10.1016/J.Jcp.2011.05.028  0.305
2011 Lan EI, Liao JC. Metabolic engineering of cyanobacteria for 1-butanol production from carbon dioxide. Metabolic Engineering. 13: 353-63. PMID 21569861 DOI: 10.1016/J.Ymben.2011.04.004  0.316
2011 Taguchi M, Liao JC. Rainbow trout consume less oxygen in turbulence: the energetics of swimming behaviors at different speeds. The Journal of Experimental Biology. 214: 1428-36. PMID 21490251 DOI: 10.1242/Jeb.052027  0.323
2011 Shen CR, Lan EI, Dekishima Y, Baez A, Cho KM, Liao JC. Driving forces enable high-titer anaerobic 1-butanol synthesis in Escherichia coli. Applied and Environmental Microbiology. 77: 2905-15. PMID 21398484 DOI: 10.1128/Aem.03034-10  0.308
2011 Rizk ML, Laguna R, Smith KM, Tabita FR, Liao JC. Redox homeostasis phenotypes in RubisCO-deficient Rhodobacter sphaeroides via ensemble modeling. Biotechnology Progress. 27: 15-22. PMID 20939096 DOI: 10.1002/Btpr.506  0.303
2010 Liao JC. Organization and physiology of posterior lateral line afferent neurons in larval zebrafish. Biology Letters. 6: 402-5. PMID 20181553 DOI: 10.1098/Rsbl.2009.0995  0.342
2009 Rizk ML, Liao JC. Ensemble modeling for aromatic production in Escherichia coli. Plos One. 4: e6903. PMID 19730732 DOI: 10.1371/Journal.Pone.0006903  0.31
2009 Contador CA, Rizk ML, Asenjo JA, Liao JC. Ensemble modeling for strain development of L-lysine-producing Escherichia coli. Metabolic Engineering. 11: 221-33. PMID 19379820 DOI: 10.1016/J.Ymben.2009.04.002  0.312
2009 Rizk ML, Liao JC. Ensemble modeling and related mathematical modeling of metabolic networks Journal of the Taiwan Institute of Chemical Engineers. 40: 595-601. DOI: 10.1016/J.Jtice.2009.05.003  0.309
2008 Liao JC, Fetcho JR. Shared versus specialized glycinergic spinal interneurons in axial motor circuits of larval zebrafish. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 28: 12982-92. PMID 19036991 DOI: 10.1523/Jneurosci.3330-08.2008  0.625
2008 Atsumi S, Liao JC. Directed evolution of Methanococcus jannaschii citramalate synthase for biosynthesis of 1-propanol and 1-butanol by Escherichia coli. Applied and Environmental Microbiology. 74: 7802-8. PMID 18952866 DOI: 10.1128/Aem.02046-08  0.31
2008 Tran LM, Rizk ML, Liao JC. Ensemble modeling of metabolic networks. Biophysical Journal. 95: 5606-17. PMID 18820235 DOI: 10.1529/Biophysj.108.135442  0.3
2007 Liao JC. A review of fish swimming mechanics and behaviour in altered flows. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 362: 1973-93. PMID 17472925 DOI: 10.1098/Rstb.2007.2082  0.369
2006 Liao JC. The role of the lateral line and vision on body kinematics and hydrodynamic preference of rainbow trout in turbulent flow. The Journal of Experimental Biology. 209: 4077-90. PMID 17023602 DOI: 10.1242/Jeb.02487  0.362
2006 Beal DN, Hover FS, Triantafyllou MS, Liao JC, Lauder GV. Passive propulsion in vortex wakes Journal of Fluid Mechanics. 549: 385-402. DOI: 10.1017/S0022112005007925  0.54
2005 Zhou B, Beckwith D, Jarboe LR, Liao JC. Markov Chain modeling of pyelonephritis-associated pili expression in uropathogenic Escherichia coli. Biophysical Journal. 88: 2541-53. PMID 15681643 DOI: 10.1529/Biophysj.104.052126  0.301
2004 Liao JC. Neuromuscular control of trout swimming in a vortex street: implications for energy economy during the Karman gait. The Journal of Experimental Biology. 207: 3495-506. PMID 15339945 DOI: 10.1242/Jeb.01125  0.33
2003 Liao JC, Beal DN, Lauder GV, Triantafyllou MS. Fish exploiting vortices decrease muscle activity. Science (New York, N.Y.). 302: 1566-9. PMID 14645849 DOI: 10.1126/Science.1088295  0.55
2003 Liao JC, Beal DN, Lauder GV, Triantafyllou MS. The Kármán gait: novel body kinematics of rainbow trout swimming in a vortex street. The Journal of Experimental Biology. 206: 1059-73. PMID 12582148 DOI: 10.1242/Jeb.00209  0.586
2000 Wang C, Oh MK, Liao JC. Directed evolution of metabolically engineered Escherichia coli for carotenoid production. Biotechnology Progress. 16: 922-6. PMID 11101317 DOI: 10.1021/Bp000124F  0.302
1994 Liao JC, Chao YP, Patnaik R. Alteration of the biochemical valves in the central metabolism of escherichia coli Annals of the New York Academy of Sciences. 745: 21-34. PMID 7832509 DOI: 10.1111/J.1749-6632.1994.Tb44361.X  0.302
1993 Chao YP, Liao JC. Alteration of growth yield by overexpression of phosphoenolpyruvate carboxylase and phosphoenolpyruvate carboxykinase in Escherichia coli Applied and Environmental Microbiology. 59: 4261-4265. PMID 8285716 DOI: 10.1128/Aem.59.12.4261-4265.1993  0.305
1987 Liao JC, Lightfoot EN. Extending the quasi-steady state concept to analysis of metabolic networks. Journal of Theoretical Biology. 126: 253-73. PMID 3657233 DOI: 10.1016/S0022-5193(87)80234-5  0.306
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