| Year |
Citation |
Score |
| 2024 |
Vargas-Gastélum L, Romer AS, Ghotbi M, Dallas JW, Alexander NR, Moe KC, McPhail KL, Neuhaus GF, Shadmani L, Spatafora JW, Stajich JE, Tabima JF, Walker DM. Herptile gut microbiomes: a natural system to study multi-kingdom interactions between filamentous fungi and bacteria. Msphere. e0047523. PMID 38349154 DOI: 10.1128/msphere.00475-23 |
0.59 |
|
| 2024 |
Kurbessoian T, Stevenson D, Haro R, Ying S, Stajich JE. Draft genome sequence of a black yeast fungus isolated from La Brea Tar Pits. Microbiology Resource Announcements. e0091323. PMID 38179910 DOI: 10.1128/mra.00913-23 |
0.836 |
|
| 2023 |
Ettinger CL, Wu-Woods J, Kurbessoian T, Brown DJ, Souza Pacheco Id, Vindiola BG, Walling LL, Atkinson PW, Byrne FJ, Redak R, Stajich JE. Geographical survey of the mycobiome and microbiome of Southern California glassy-winged sharpshooters. Msphere. 8: e0026723. PMID 37800904 DOI: 10.1128/msphere.00267-23 |
0.805 |
|
| 2023 |
Stajich JE, Lovett B, Lee E, Macias AM, Hajek AE, de Bivort BL, Kasson MT, De Fine Licht HH, Elya C. Signatures of transposon-mediated genome inflation, host specialization, and photoentrainment in and allied entomophthoralean fungi. Biorxiv : the Preprint Server For Biology. PMID 37745330 DOI: 10.1101/2023.09.13.557621 |
0.453 |
|
| 2023 |
Adams JN, Escalona M, Marimuthu MPA, Fairbairn CW, Beraut E, Seligmann W, Nguyen O, Chumchim N, Stajich JE. The reference genome assembly of the bright cobblestone lichen, Acarospora socialis. The Journal of Heredity. 114: 707-714. PMID 37740386 DOI: 10.1093/jhered/esad052 |
0.803 |
|
| 2023 |
Leo P, de Melo Texeira M, Chander AM, Singh NK, Simpson AC, Yurkov A, Karouia F, Stajich JE, Mason CE, Venkateswaran K. Genomic characterization and radiation tolerance of Naganishia kalamii sp. nov. and Cystobasidium onofrii sp. nov. from Mars 2020 mission assembly facilities. Ima Fungus. 14: 15. PMID 37568226 DOI: 10.1186/s43008-023-00119-4 |
0.337 |
|
| 2023 |
Gryganskyi AP, Golan J, Muszewska A, Idnurm A, Dolatabadi S, Mondo SJ, Kutovenko VB, Kutovenko VO, Gajdeczka MT, Anishchenko IM, Pawlowska J, Tran NV, Ebersberger I, Voigt K, Wang Y, ... ... Stajich JE, et al. Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned? Microorganisms. 11. PMID 37513002 DOI: 10.3390/microorganisms11071830 |
0.83 |
|
| 2023 |
Ettinger CL, Ostovar T, Yacoub M, Ahrendt S, Hice RH, Federici BA, Stajich JE. Genomes and transcriptomes help unravel the complex life cycle of the blastoclad fungus, , an obligate parasite of mosquitoes and microcrustaceans. Mycologia. 1-18. PMID 37494633 DOI: 10.1080/00275514.2023.2228182 |
0.684 |
|
| 2023 |
Murante D, Demers EG, Kurbessoian T, Ruzic M, Ashare A, Stajich JE, Hogan DA. Mrs4 loss of function in fungi during adaptation to the cystic fibrosis lung. Mbio. e0117123. PMID 37432019 DOI: 10.1128/mbio.01171-23 |
0.783 |
|
| 2023 |
Meili CH, Jones AL, Arreola AX, Habel J, Pratt CJ, Hanafy RA, Wang Y, Yassin AS, TagElDein MA, Moon CD, Janssen PH, Shrestha M, Rajbhandari P, Nagler M, Vinzelj JM, ... ... Stajich JE, et al. Patterns and determinants of the global herbivorous mycobiome. Nature Communications. 14: 3798. PMID 37365172 DOI: 10.1038/s41467-023-39508-z |
0.352 |
|
| 2023 |
Merényi Z, Krizsán K, Sahu N, Liu XB, Bálint B, Stajich JE, Spatafora JW, Nagy LG. Genomes of fungi and relatives reveal delayed loss of ancestral gene families and evolution of key fungal traits. Nature Ecology & Evolution. PMID 37349567 DOI: 10.1038/s41559-023-02095-9 |
0.663 |
|
| 2023 |
Kurbessoian T, Murante D, Crocker A, Hogan DA, Stajich JE. In host evolution of Exophiala dermatitidis in cystic fibrosis lung micro-environment. G3 (Bethesda, Md.). PMID 37293838 DOI: 10.1093/g3journal/jkad126 |
0.823 |
|
| 2023 |
Shea T, Mohabir JT, Kurbessoian T, Berdy B, Fontaine J, Gnirke A, Livny J, Stajich JE, Cuomo CA. Genome Sequence of Lichtheimia ornata, an Emerging Opportunistic Mucorales Pathogen. Microbiology Resource Announcements. e0033823. PMID 37289095 DOI: 10.1128/mra.00338-23 |
0.828 |
|
| 2023 |
Murante D, Demers EG, Kurbessoian T, Ruzic M, Ashare A, Stajich JE, Hogan DA. Mrs4 loss of function in fungi during adaptation to the cystic fibrosis lung. Biorxiv : the Preprint Server For Biology. PMID 37066389 DOI: 10.1101/2023.04.05.535776 |
0.788 |
|
| 2023 |
Kurbessoian T, Heimlich-Villalta G, Ginnan N, Vieira FC, Rolshausen PE, Roper MC, Stajich JE. Genome Sequence and Assembly of 18 Fusarium Isolates from Florida Citrus under High Huanglongbing Disease Pressure and California Citrus under Low Huanglongbing Disease Pressure. Microbiology Resource Announcements. e0010123. PMID 37042758 DOI: 10.1128/mra.00101-23 |
0.825 |
|
| 2023 |
Wang Y, Chang Y, Ortañez J, Peña JF, Carter-House D, Reynolds NK, Smith ME, Benny G, Mondo SJ, Salamov A, Lipzen A, Pangilinan J, Guo J, LaButti K, Andreopolous W, ... ... Stajich JE, et al. Divergent evolution of early terrestrial fungi reveals the evolution of Mucormycosis pathogenicity factors. Genome Biology and Evolution. PMID 36930540 DOI: 10.1093/gbe/evad046 |
0.815 |
|
| 2023 |
Liu X, Lyu L, Li J, Sen B, Bai M, Stajich JE, Collier JL, Wang G. Comparative Genomic Analyses of Cellulolytic Machinery Reveal Two Nutritional Strategies of Marine Labyrinthulomycetes Protists. Microbiology Spectrum. e0424722. PMID 36744882 DOI: 10.1128/spectrum.04247-22 |
0.381 |
|
| 2023 |
Reynolds NK, Stajich JE, Benny GL, Barry K, Mondo S, LaButti K, Lipzen A, Daum C, Grigoriev IV, Ho HM, Crous PW, Spatafora JW, Smith ME. Mycoparasites, gut dwellers, and saprotrophs: Phylogenomic reconstructions and comparative analyses of Kickxellomycotina fungi. Genome Biology and Evolution. PMID 36617272 DOI: 10.1093/gbe/evac185 |
0.646 |
|
| 2022 |
Chander AM, Teixeira MM, Singh NK, Williams MP, Simpson AC, Damle N, Parker CW, Stajich JE, Mason CE, Torok T, Venkateswaran K. Description and Genome Characterization of Three Novel Fungal Strains Isolated from Mars 2020 Mission-Associated Spacecraft Assembly Facility Surfaces-Recommendations for Two New Genera and One Species. Journal of Fungi (Basel, Switzerland). 9. PMID 36675851 DOI: 10.3390/jof9010031 |
0.314 |
|
| 2022 |
Winter DJ, Weir BS, Glare T, Rhodes J, Perrott J, Fisher MC, Stajich JE, Digby A, Dearden PK, Cox MP. A single fungal strain was the unexpected cause of a mass aspergillosis outbreak in the world's largest and only flightless parrot. Iscience. 25: 105470. PMID 36404926 DOI: 10.1016/j.isci.2022.105470 |
0.534 |
|
| 2022 |
Lofgren LA, Ross BS, Cramer RA, Stajich JE. The pan-genome of Aspergillus fumigatus provides a high-resolution view of its population structure revealing high levels of lineage-specific diversity driven by recombination. Plos Biology. 20: e3001890. PMID 36395320 DOI: 10.1371/journal.pbio.3001890 |
0.824 |
|
| 2022 |
Case NT, Berman J, Blehert DS, Cramer RA, Cuomo C, Currie CR, Ene IV, Fisher MC, Fritz-Laylin LK, Gerstein AC, Glass NL, Gow NAR, Gurr SJ, Hittinger CT, Hohl TM, ... ... Stajich JE, et al. The future of fungi: threats and opportunities. G3 (Bethesda, Md.). PMID 36179219 DOI: 10.1093/g3journal/jkac224 |
0.583 |
|
| 2022 |
de Melo Teixeira M, Almeida-Paes R, Reis Bernardes-Engemann A, Moraes Nicola A, Marques de Macedo P, Carlos Francesconi do Valle A, Clara Gutierrez-Galhardo M, Francis Saraiva Freitas D, Barker BM, Matute DR, Stajich JE, Maria Zancopé-Oliveira R. Single nucleotide polymorphisms and chromosomal copy number variation may impact the Sporothrix brasiliensis antifungal susceptibility and sporotrichosis clinical outcomes. Fungal Genetics and Biology : Fg & B. 103743. PMID 36152775 DOI: 10.1016/j.fgb.2022.103743 |
0.613 |
|
| 2022 |
Amses KR, Simmons DR, Longcore JE, Mondo SJ, Seto K, Jerônimo GH, Bonds AE, Quandt CA, Davis WJ, Chang Y, Federici BA, Kuo A, LaButti K, Pangilinan J, Andreopoulos W, ... ... Stajich JE, et al. Diploid-dominant life cycles characterize the early evolution of Fungi. Proceedings of the National Academy of Sciences of the United States of America. 119: e2116841119. PMID 36037379 DOI: 10.1073/pnas.2116841119 |
0.643 |
|
| 2022 |
Stajich JE, Lovett B, Ettinger CL, Carter-House DA, Kurbessoian T, Kasson MT. An Improved 1.5-Gigabase Draft Assembly of Massospora cicadina (Zoopagomycota), an Obligate Fungal Parasite of 13- and 17-Year Cicadas. Microbiology Resource Announcements. e0036722. PMID 36036589 DOI: 10.1128/mra.00367-22 |
0.818 |
|
| 2022 |
Ettinger CL, Lovett B, Kasson MT, Stajich JE. Metagenome-Assembled Genomes of Bacteria Associated with Massospora cicadina Fungal Plugs from Infected Brood VIII Periodical Cicadas. Microbiology Resource Announcements. e0041322. PMID 36036588 DOI: 10.1128/mra.00413-22 |
0.378 |
|
| 2022 |
Gryganskyi AP, Nie Y, Hajek AE, Hodge KT, Liu XY, Aadland K, Voigt K, Anishchenko IM, Kutovenko VB, Kava L, Vuek A, Vilgalys R, Huang B, Stajich JE. The Early Terrestrial Fungal Lineage of -Transition from Saprotroph to Parasitic Lifestyle. Journal of Fungi (Basel, Switzerland). 8. PMID 36012777 DOI: 10.3390/jof8080789 |
0.808 |
|
| 2022 |
Chang Y, Wang Y, Mondo S, Ahrendt S, Andreopoulos W, Barry K, Beard J, Benny GL, Blankenship S, Bonito G, Cuomo C, Desiro A, Gervers KA, Hundley H, Kuo A, ... ... Stajich JE, et al. Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies. Iscience. 25: 104840. PMID 35996588 DOI: 10.1016/j.isci.2022.104840 |
0.759 |
|
| 2022 |
Maccaro JJ, Moreira Salgado JF, Klinger E, Argueta Guzmán MP, Ngor L, Stajich JE, McFrederick Q. Comparative Genomics Reveals that Metabolism Underlies Evolution of Entomopathogenicity in Bee-loving Ascosphaera spp. Fungi. Journal of Invertebrate Pathology. 107804. PMID 35933037 DOI: 10.1016/j.jip.2022.107804 |
0.439 |
|
| 2022 |
Blachowicz A, Romsdahl J, Chiang AJ, Masonjones S, Kalkum M, Stajich JE, Torok T, Wang CCC, Venkateswaran K. The International Space Station Environment Triggers Molecular Responses in . Frontiers in Microbiology. 13: 893071. PMID 35847112 DOI: 10.3389/fmicb.2022.893071 |
0.81 |
|
| 2022 |
Malar C M, Wang Y, Stajich JE, Kokkoris V, Villeneuve-Laroche M, Yildirir G, Corradi N. Early branching arbuscular mycorrhizal fungus carries a small and repeat-poor genome compared to relatives in the Glomeromycotina. Microbial Genomics. 8. PMID 35451944 DOI: 10.1099/mgen.0.000810 |
0.457 |
|
| 2022 |
Lofgren LA, Lorch JM, Cramer RA, Blehert DS, Berlowski-Zier BM, Winzeler ME, Gutierrez-Perez C, Kordana NE, Stajich JE. Avian-associated Aspergillus fumigatus displays broad phylogenetic distribution, no evidence for host specificity, and multiple genotypes within epizootic events. G3 (Bethesda, Md.). PMID 35377435 DOI: 10.1093/g3journal/jkac075 |
0.793 |
|
| 2022 |
de Melo Teixeira M, Stajich JE, Sahl JW, Thompson GR, Brem RB, Dubin CA, Blackmon AV, Mead HL, Keim P, Barker BM. A chromosomal-level reference genome of the widely utilized Coccidioides posadasii laboratory strain "Silveira". G3 (Bethesda, Md.). PMID 35137016 DOI: 10.1093/g3journal/jkac031 |
0.37 |
|
| 2021 |
Kirkland ME, Stannard M, Kowalski CH, Mould D, Caffrey-Carr A, Temple RM, Ross BS, Lofgren LA, Stajich JE, Cramer RA, Obar JJ. Host Lung Environment Limits Aspergillus fumigatus Germination through an SskA-Dependent Signaling Response. Msphere. 6: e0092221. PMID 34878292 DOI: 10.1128/msphere.00922-21 |
0.764 |
|
| 2021 |
Lofgren LA, Stajich JE. Fungal biodiversity and conservation mycology in light of new technology, big data, and changing attitudes. Current Biology : Cb. 31: R1312-R1325. PMID 34637742 DOI: 10.1016/j.cub.2021.06.083 |
0.805 |
|
| 2021 |
Hopke A, Mela A, Ellett F, Carter-House D, Peña JF, Stajich JE, Altamirano S, Lovett B, Egan M, Kale S, Kronholm I, Guerette P, Szewczyk E, McCluskey K, Breslauer D, et al. Crowdsourced analysis of fungal growth and branching on microfluidic platforms. Plos One. 16: e0257823. PMID 34587206 DOI: 10.1371/journal.pone.0257823 |
0.774 |
|
| 2021 |
Ettinger CL, Byrne FJ, Collin MA, Carter-House D, Walling LL, Atkinson PW, Redak RA, Stajich JE. Improved draft reference genome for the Glassy-winged Sharpshooter (Homalodisca vitripennis), a vector for Pierce's disease. G3 (Bethesda, Md.). 11. PMID 34568917 DOI: 10.1093/g3journal/jkab255 |
0.83 |
|
| 2021 |
Ross BS, Lofgren LA, Ashare A, Stajich JE, Cramer RA. Aspergillus fumigatus In-Host HOG Pathway Mutation for Cystic Fibrosis Lung Microenvironment Persistence. Mbio. 12: e0215321. PMID 34465017 DOI: 10.1128/mBio.02153-21 |
0.761 |
|
| 2021 |
Nielsen KN, Salgado JFM, Natsopoulou ME, Kristensen T, Stajich JE, De Fine Licht HH. Diploidy within a haploid genus of entomopathogenic fungi. Genome Biology and Evolution. PMID 34247231 DOI: 10.1093/gbe/evab158 |
0.348 |
|
| 2021 |
Nielsen KN, Salgado JFM, Natsopoulou ME, Kristensen T, Stajich JE, De Fine Licht HH. Diploidy within a haploid genus of entomopathogenic fungi. Genome Biology and Evolution. PMID 34247231 DOI: 10.1093/gbe/evab158 |
0.348 |
|
| 2021 |
Coleine C, Selbmann L, Pombubpa N, Stajich JE. Amplicon Sequencing of Rock-Inhabiting Microbial Communities from Joshua Tree National Park, USA. Microbiology Resource Announcements. 10: e0049421. PMID 34165331 DOI: 10.1128/MRA.00494-21 |
0.801 |
|
| 2021 |
Ward RD, Stajich JE, Johansen JR, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Varghese N, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen IA, et al. Metagenome Sequencing to Explore Phylogenomics of Terrestrial Cyanobacteria. Microbiology Resource Announcements. 10: e0025821. PMID 34080906 DOI: 10.1128/MRA.00258-21 |
0.301 |
|
| 2021 |
Carlin AF, Beyhan S, Peña JF, Stajich JE, Viriyakosol S, Fierer J, Kirkland TN. Transcriptional Analysis of Mycelia and Spherules by RNA Sequencing. Journal of Fungi (Basel, Switzerland). 7. PMID 34067070 DOI: 10.3390/jof7050366 |
0.782 |
|
| 2021 |
Stajich JE, Vu AL, Judelson HS, Vogel GM, Gore MA, Carlson MO, Devitt N, Jacobi J, Mudge J, Lamour KH, Smart CD. High-Quality Reference Genome Sequence for the Oomycete Vegetable Pathogen Phytophthora capsici Strain LT1534. Microbiology Resource Announcements. 10: e0029521. PMID 34042486 DOI: 10.1128/MRA.00295-21 |
0.381 |
|
| 2021 |
de Melo Teixeira M, Lang BF, Matute DR, Stajich JE, Barker B. The mitochondrial genomes of the human pathogens Coccidioides immitis and C. posadasii. G3 (Bethesda, Md.). PMID 33871031 DOI: 10.1093/g3journal/jkab132 |
0.676 |
|
| 2021 |
Malar C M, Krüger M, Krüger C, Wang Y, Stajich JE, Keller J, Chen ECH, Yildirir G, Villeneuve-Laroche M, Roux C, Delaux PM, Corradi N. The genome of Geosiphon pyriformis reveals ancestral traits linked to the emergence of the arbuscular mycorrhizal symbiosis. Current Biology : Cb. 31: 1578-1580. PMID 33848479 DOI: 10.1016/j.cub.2021.03.032 |
0.391 |
|
| 2021 |
Rajewski A, Carter-House D, Stajich J, Litt A. Datura genome reveals duplications of psychoactive alkaloid biosynthetic genes and high mutation rate following tissue culture. Bmc Genomics. 22: 201. PMID 33752605 DOI: 10.1186/s12864-021-07489-2 |
0.816 |
|
| 2021 |
Cissé OH, Ma L, Dekker JP, Khil PP, Youn JH, Brenchley JM, Blair R, Pahar B, Chabé M, Van Rompay KKA, Keesler R, Sukura A, Hirsch V, Kutty G, Liu Y, ... ... Stajich JE, et al. Genomic insights into the host specific adaptation of the Pneumocystis genus. Communications Biology. 4: 305. PMID 33686174 DOI: 10.1038/s42003-021-01799-7 |
0.76 |
|
| 2021 |
Li Y, Steenwyk JL, Chang Y, Wang Y, James TY, Stajich JE, Spatafora JW, Groenewald M, Dunn CW, Hittinger CT, Shen XX, Rokas A. A genome-scale phylogeny of the kingdom Fungi. Current Biology : Cb. PMID 33607033 DOI: 10.1016/j.cub.2021.01.074 |
0.673 |
|
| 2021 |
Jones JT, Liu KW, Wang X, Kowalski CH, Ross BS, Mills KAM, Kerkaert JD, Hohl TM, Lofgren LA, Stajich JE, Obar JJ, Cramer RA. Aspergillus fumigatus Strain-Specific Conidia Lung Persistence Causes an Allergic Broncho-Pulmonary Aspergillosis-Like Disease Phenotype. Msphere. 6. PMID 33597172 DOI: 10.1128/mSphere.01250-20 |
0.758 |
|
| 2021 |
Malar C M, Krüger M, Krüger C, Wang Y, Stajich JE, Keller J, Chen ECH, Yildirir G, Villeneuve-Laroche M, Roux C, Delaux PM, Corradi N. The genome of Geosiphon pyriformis reveals ancestral traits linked to the emergence of the arbuscular mycorrhizal symbiosis. Current Biology : Cb. PMID 33592192 DOI: 10.1016/j.cub.2021.01.058 |
0.416 |
|
| 2021 |
Lee YY, Vidal-Diez de Ulzurrun G, Schwarz EM, Stajich JE, Hsueh YP. Genome sequence of the oyster mushroom Pleurotus ostreatus strain PC9. G3 (Bethesda, Md.). 11. PMID 33585864 DOI: 10.1093/g3journal/jkaa008 |
0.342 |
|
| 2021 |
Vidal-Diez de Ulzurrun G, Lee YY, Stajich JE, Schwarz EM, Hsueh YP. Genomic analyses of two Italian oyster mushroom Pleurotus pulmonarius strains. G3 (Bethesda, Md.). 11. PMID 33585863 DOI: 10.1093/g3journal/jkaa007 |
0.401 |
|
| 2021 |
Chang Y, Rochon D, Sekimoto S, Wang Y, Chovatia M, Sandor L, Salamov A, Grigoriev IV, Stajich JE, Spatafora JW. Genome-scale phylogenetic analyses confirm Olpidium as the closest living zoosporic fungus to the non-flagellated, terrestrial fungi. Scientific Reports. 11: 3217. PMID 33547391 DOI: 10.1038/s41598-021-82607-4 |
0.635 |
|
| 2020 |
Vandepol N, Liber J, Desirò A, Na H, Kennedy M, Barry K, Grigoriev IV, Miller AN, O'Donnell K, Stajich JE, Bonito G. Resolving the Mortierellaceae phylogeny through synthesis of multi-gene phylogenetics and phylogenomics. Fungal Diversity. 104: 267-289. PMID 33364917 DOI: 10.1007/s13225-020-00455-5 |
0.378 |
|
| 2020 |
Lofgren LA, Nguyen NH, Vilgalys R, Ruytinx J, Liao HL, Branco S, Kuo A, LaButti K, Lipzen A, Andreopoulos W, Pangilinan J, Riley R, Hundley H, Na H, Barry K, ... ... Stajich JE, et al. Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi. The New Phytologist. PMID 33355923 DOI: 10.1111/nph.17160 |
0.829 |
|
| 2020 |
Selbmann L, Benkő Z, Coleine C, de Hoog S, Donati C, Druzhinina I, Emri T, Ettinger CL, Gladfelter AS, Gorbushina AA, Grigoriev IV, Grube M, Gunde-Cimerman N, Karányi ZÁ, Kocsis B, ... ... Stajich JE, et al. Shed Light in the DaRk LineagES of the Fungal Tree of Life-STRES. Life (Basel, Switzerland). 10. PMID 33352712 DOI: 10.3390/life10120362 |
0.381 |
|
| 2020 |
Geiser DM, Al-Hatmi A, Aoki T, Arie T, Balmas V, Barnes I, Bergstrom GC, Bhattacharyya MKK, Blomquist CL, Bowden R, Brankovics B, Brown DW, Burgess LW, Bushley K, Busman M, ... ... Stajich JE, et al. Phylogenomic analysis of a 55.1 kb 19-gene dataset resolves a monophyletic Fusarium that includes the Fusarium solani Species Complex. Phytopathology. PMID 33200960 DOI: 10.1094/PHYTO-08-20-0330-LE |
0.575 |
|
| 2020 |
Eudes Filho J, Santos IB, Reis CMS, Patané JS, Paredes V, Romualdo JP, Poggianni SSC, Castro TCB, Gomez OM, Pereira SA, Schubach EYP, Gomes KP, Mavengere H, Alves LGB, Lucas J, ... ... Stajich JE, et al. A novel genomic variant in Midwestern Brazil: evidence for an older and wider sporotrichosis epidemic. Emerging Microbes & Infections. 1-26. PMID 33155518 DOI: 10.1080/22221751.2020.1847001 |
0.665 |
|
| 2020 |
Carrillo AJ, Cabrera IE, Spasojevic MJ, Schacht P, Stajich JE, Borkovich KA. Clustering analysis of large-scale phenotypic data in the model filamentous fungus Neurospora crassa. Bmc Genomics. 21: 755. PMID 33138786 DOI: 10.1186/s12864-020-07131-7 |
0.629 |
|
| 2020 |
Chen J, Lu L, Robb SMC, Collin M, Okumoto Y, Stajich JE, Wessler SR. Genomic diversity generated by a transposable element burst in a rice recombinant inbred population. Proceedings of the National Academy of Sciences of the United States of America. PMID 33020276 DOI: 10.1073/pnas.2015736117 |
0.7 |
|
| 2020 |
O'Donnell K, Al-Hatmi AMS, Aoki T, Brankovics B, Cano-Lira JF, Coleman JJ, de Hoog GS, Di Pietro A, Frandsen RJN, Geiser DM, Gibas CFC, Guarro J, Kim HS, Kistler HC, Laraba I, ... ... Stajich JE, et al. No to : Phylogenomic and Practical Reasons for Continued Inclusion of the Fusarium solani Species Complex in the Genus . Msphere. 5. PMID 32938701 DOI: 10.1128/mSphere.00810-20 |
0.576 |
|
| 2020 |
Collins CG, Spasojevic MJ, Alados CL, Aronson EL, Benavides JC, Cannone N, Caviezel C, Grau O, Guo H, Kudo G, Kuhn NJ, Müllerová J, Phillips ML, Pombubpa N, Reverchon F, ... ... Stajich JE, et al. Belowground Impacts of Alpine Woody Encroachment are determined by Plant Traits, Local Climate and Soil Conditions. Global Change Biology. PMID 32902066 DOI: 10.1111/Gcb.15340 |
0.781 |
|
| 2020 |
Myers JM, Bonds AE, Clemons RA, Thapa NA, Simmons DR, Carter-House D, Ortanez J, Liu P, Miralles-Durán A, Desirò A, Longcore JE, Bonito G, Stajich JE, Spatafora JW, Chang Y, et al. Survey of Early-Diverging Lineages of Fungi Reveals Abundant and Diverse Mycoviruses. Mbio. 11. PMID 32900807 DOI: 10.1128/Mbio.02027-20 |
0.814 |
|
| 2020 |
Tabima JF, Trautman IA, Chang Y, Wang Y, Mondo S, Kuo A, Salamov A, Grigoriev IV, Stajich JE, Spatafora JW. Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont, . G3 (Bethesda, Md.). PMID 32727924 DOI: 10.1534/G3.120.401516 |
0.616 |
|
| 2020 |
James TY, Stajich JE, Hittinger CT, Rokas A. Toward a Fully Resolved Fungal Tree of Life. Annual Review of Microbiology. PMID 32660385 DOI: 10.1146/Annurev-Micro-022020-051835 |
0.61 |
|
| 2020 |
Coleine C, Pombubpa N, Zucconi L, Onofri S, Turchetti B, Buzzini P, Stajich JE, Selbmann L. Uncovered Microbial Diversity in Antarctic Cryptoendolithic Communities Sampling three Representative Locations of the Victoria Land. Microorganisms. 8. PMID 32585947 DOI: 10.3390/microorganisms8060942 |
0.783 |
|
| 2020 |
Pombubpa N, Pietrasiak N, De Ley P, Stajich JE. Insights into drylands biocrust microbiome: geography, soil depth, and crust type affect biocrust microbial communities and networks in Mojave Desert, USA. Fems Microbiology Ecology. PMID 32573682 DOI: 10.1093/Femsec/Fiaa125 |
0.798 |
|
| 2020 |
Macias AM, Geiser DM, Stajich JE, Łukasik P, Veloso C, Bublitz DC, Berger MC, Boyce GR, Hodge K, Kasson MT. Evolutionary relationships among spp. (Entomophthorales), obligate pathogens of cicadas. Mycologia. 1-15. PMID 32412847 DOI: 10.1080/00275514.2020.1742033 |
0.67 |
|
| 2020 |
Coleine C, Masonjones S, Sterflinger K, Onofri S, Selbmann L, Stajich JE. Peculiar genomic traits in the stress-adapted cryptoendolithic Antarctic fungus Friedmanniomyces endolithicus. Fungal Biology. 124: 458-467. PMID 32389308 DOI: 10.1016/J.Funbio.2020.01.005 |
0.831 |
|
| 2020 |
Fisher MC, Gurr SJ, Cuomo CA, Blehert DS, Jin H, Stukenbrock EH, Stajich JE, Kahmann R, Boone C, Denning DW, Gow NAR, Klein BS, Kronstad JW, Sheppard DC, Taylor JW, et al. Threats Posed by the Fungal Kingdom to Humans, Wildlife, and Agriculture. Mbio. 11. PMID 32371596 DOI: 10.1128/Mbio.00449-20 |
0.639 |
|
| 2020 |
Coleine C, Masonjones S, Onofri S, Selbmann L, Stajich JE. Draft Genome Sequence of the Yeast sp. Strain CCFEE 5036, Isolated from McMurdo Dry Valleys, Antarctica. Microbiology Resource Announcements. 9. PMID 32241854 DOI: 10.1128/MRA.00020-20 |
0.837 |
|
| 2020 |
Yang CT, Vidal-Diez de Ulzurrun G, Gonçalves AP, Lin HC, Chang CW, Huang TY, Chen SA, Lai CK, Tsai IJ, Schroeder FC, Stajich JE, Hsueh YP. Natural diversity in the predatory behavior facilitates the establishment of a robust model strain for nematode-trapping fungi. Proceedings of the National Academy of Sciences of the United States of America. PMID 32161129 DOI: 10.1073/Pnas.1919726117 |
0.406 |
|
| 2020 |
Coleine C, Pombubpa N, Zucconi L, Onofri S, Stajich JE, Selbmann L. Endolithic Fungal Species Markers for Harshest Conditions in the McMurdo Dry Valleys, Antarctica. Life (Basel, Switzerland). 10. PMID 32041249 DOI: 10.3390/Life10020013 |
0.794 |
|
| 2020 |
Odebode A, Adekunle A, Stajich J, Adeonipekun P. Airborne fungi spores distribution in various locations in Lagos, Nigeria. Environmental Monitoring and Assessment. 192: 87. PMID 31900675 DOI: 10.1007/S10661-019-8038-3 |
0.324 |
|
| 2020 |
Knudsen K, Adams JN, Kocourková J, Wang Y, Ortañez J, Stajich JE. The monophyletic Sarcogyne canadensis–wheeleri clade, a newly recognized group sister to the European Acarospora glaucocarpa group The Bryologist. 123: 11. DOI: 10.1639/0007-2745-123.1.011 |
0.786 |
|
| 2020 |
Coleine C, Stajich JE, Zucconi L, Onofri S, Selbmann L. Sun exposure drives Antarctic cryptoendolithic community structure and composition Polar Biology. 43: 607-615. DOI: 10.1007/S00300-020-02650-1 |
0.317 |
|
| 2020 |
Coleine C, Stajich JE, Pombubpa N, Zucconi L, Onofri S, Selbmann L. Sampling strategies to assess microbial diversity of Antarctic cryptoendolithic communities Polar Biology. 43: 225-235. DOI: 10.1007/S00300-020-02625-2 |
0.796 |
|
| 2019 |
Macias AM, Marek PE, Morrissey EM, Brewer MS, Short DPG, Stauder CM, Wickert KL, Berger MC, Metheny AM, Stajich JE, Boyce G, Rio RVM, Panaccione DG, Wong V, Jones TH, et al. Diversity and function of fungi associated with the fungivorous millipede, . Fungal Ecology. 41: 187-197. PMID 31871487 DOI: 10.1016/J.Funeco.2019.06.006 |
0.378 |
|
| 2019 |
Boyce GR, Gluck-Thaler E, Slot JC, Stajich JE, Davis WJ, James TY, Cooley JR, Panaccione DG, Eilenberg J, De Fine Licht HH, Macias AM, Berger MC, Wickert KL, Stauder CM, Spahr EJ, et al. Psychoactive plant- and mushroom-associated alkaloids from two behavior modifying cicada pathogens. Fungal Ecology. 41: 147-164. PMID 31768192 DOI: 10.1016/J.Funeco.2019.06.002 |
0.588 |
|
| 2019 |
Carrillo JD, Mayorquin JS, Stajich JE, Eskalen A. Probe-Based Multiplex Real-Time PCR as a Diagnostic Tool to Distinguish Distinct Fungal Symbionts Associated With and in California. Plant Disease. PDIS01190201RE. PMID 31647694 DOI: 10.1094/Pdis-01-19-0201-Re |
0.306 |
|
| 2019 |
Uehling JK, Entler MR, Meredith HR, Millet LJ, Timm CM, Aufrecht JA, Bonito GM, Engle NL, Labbé JL, Doktycz MJ, Retterer ST, Spatafora JW, Stajich JE, Tschaplinski TJ, Vilgalys RJ. Microfluidics and Metabolomics Reveal Symbiotic Bacterial-Fungal Interactions Between and Include Metabolite Exchange. Frontiers in Microbiology. 10: 2163. PMID 31632357 DOI: 10.3389/Fmicb.2019.02163 |
0.58 |
|
| 2019 |
Kowalski CH, Kerkaert JD, Liu KW, Bond MC, Hartmann R, Nadell CD, Stajich JE, Cramer RA. Fungal biofilm morphology impacts hypoxia fitness and disease progression. Nature Microbiology. PMID 31548684 DOI: 10.1038/S41564-019-0558-7 |
0.381 |
|
| 2019 |
Carrillo JD, Rugman-Jones PF, Husein D, Stajich JE, Kasson MT, Carrillo D, Stouthamer R, Eskalen A. Members of the Euwallacea fornicatus species complex exhibit promiscuous mutualism with ambrosia fungi in Taiwan. Fungal Genetics and Biology : Fg & B. 103269. PMID 31518652 DOI: 10.1016/J.Fgb.2019.103269 |
0.367 |
|
| 2019 |
Wang Y, Youssef NH, Couger MB, Hanafy RA, Elshahed MS, Stajich JE. Molecular Dating of the Emergence of Anaerobic Rumen Fungi and the Impact of Laterally Acquired Genes. Msystems. 4. PMID 31455637 DOI: 10.1128/mSystems.00247-19 |
0.459 |
|
| 2019 |
Teixeira MM, Barker BM, Stajich JE. Improved Reference Genome Sequence of Strain WA_211, Isolated in Washington State. Microbiology Resource Announcements. 8. PMID 31416856 DOI: 10.1128/MRA.00149-19 |
0.355 |
|
| 2019 |
Coleine C, Stajich JE, Pombubpa N, Zucconi L, Onofri S, Canini F, Selbmann L. Altitude and fungal diversity influence the structure of Antarctic cryptoendolithic Bacteria communities. Environmental Microbiology Reports. PMID 31393667 DOI: 10.1111/1758-2229.12788 |
0.794 |
|
| 2019 |
Blachowicz A, Chiang AJ, Elsaesser A, Kalkum M, Ehrenfreund P, Stajich JE, Torok T, Wang CCC, Venkateswaran K. Proteomic and Metabolomic Characteristics of Extremophilic Fungi Under Simulated Mars Conditions. Frontiers in Microbiology. 10: 1013. PMID 31156574 DOI: 10.3389/Fmicb.2019.01013 |
0.306 |
|
| 2019 |
Murphy CL, Youssef NH, Hanafy RA, Couger MB, Stajich JE, Wang Y, Baker K, Dagar SS, Griffith GW, Farag IF, Callaghan TM, Elshahed MS. Horizontal gene transfer as an indispensable driver for Neocallimastigomycota evolution into a distinct gut-dwelling fungal lineage. Applied and Environmental Microbiology. PMID 31126947 DOI: 10.1128/Aem.00988-19 |
0.529 |
|
| 2019 |
Coleine C, Selbmann L, Masonjones S, Onofri S, Zucconi L, Stajich JE. Draft Genome Sequence of an Antarctic Isolate of the Black Yeast Fungus . Microbiology Resource Announcements. 8. PMID 31072892 DOI: 10.1128/MRA.00142-19 |
0.838 |
|
| 2019 |
Cissé OH, Stajich JE. FGMP: assessing fungal genome completeness. Bmc Bioinformatics. 20: 184. PMID 30987585 DOI: 10.1186/S12859-019-2782-9 |
0.771 |
|
| 2019 |
Amend A, Burgaud G, Cunliffe M, Edgcomb VP, Ettinger CL, Gutiérrez MH, Heitman J, Hom EFY, Ianiri G, Jones AC, Kagami M, Picard KT, Quandt CA, Raghukumar S, Riquelme M, ... Stajich J, et al. Fungi in the Marine Environment: Open Questions and Unsolved Problems. Mbio. 10. PMID 30837337 DOI: 10.1128/Mbio.01189-18 |
0.393 |
|
| 2019 |
Bewick AJ, Hofmeister BT, Powers RA, Mondo SJ, Grigoriev IV, James TY, Stajich JE, Schmitz RJ. Diversity of cytosine methylation across the fungal tree of life. Nature Ecology & Evolution. PMID 30778188 DOI: 10.1038/S41559-019-0810-9 |
0.64 |
|
| 2019 |
Chen J, Lu L, Benjamin J, Diaz S, Hancock CN, Stajich JE, Wessler SR. Tracking the origin of two genetic components associated with transposable element bursts in domesticated rice. Nature Communications. 10: 641. PMID 30733435 DOI: 10.1038/S41467-019-08451-3 |
0.697 |
|
| 2019 |
Kasson MT, Kasson LR, Wickert KL, Davis DD, Stajich JE. Genome Sequence of a Lethal Vascular Wilt Fungus, Verticillium nonalfalfae, a Biological Control Used Against the Invasive Ailanthus altissima. Microbiology Resource Announcements. 8. PMID 30701257 DOI: 10.1128/MRA.01619-18 |
0.318 |
|
| 2019 |
Valent B, Farman M, Tosa Y, Begerow D, Fournier E, Gladieux P, Islam MT, Kamoun S, Kemler M, Kohn LM, Lebrun MH, Stajich JE, Talbot NJ, Terauchi R, Tharreau D, et al. Pyricularia graminis-tritici is not the correct species name for the wheat blast fungus: response to Ceresini et al. (MPP 20:2). Molecular Plant Pathology. 20: 173-179. PMID 30697917 DOI: 10.1111/Mpp.12778 |
0.598 |
|
| 2019 |
Davis WJ, Amses KR, Benny GL, Carter-House D, Chang Y, Grigoriev I, Smith ME, Spatafora JW, Stajich JE, James TY. Genome-scale phylogenetics reveals a monophyletic Zoopagales (Zoopagomycota, Fungi). Molecular Phylogenetics and Evolution. PMID 30639767 DOI: 10.1016/J.Ympev.2019.01.006 |
0.831 |
|
| 2019 |
Warren SD, Clair LL, Stark LR, Lewis LA, Pombubpa N, Kurbessoian T, Stajich JE, Aanderud ZT. Reproduction and Dispersal of Biological Soil Crust Organisms Frontiers in Ecology and Evolution. 7. DOI: 10.3389/Fevo.2019.00344 |
0.775 |
|
| 2018 |
Na F, Carrillo JD, Mayorquin JS, Ndinga-Muniania C, Stajich JE, Stouthamer R, Huang YT, Lin YT, Chen CY, Eskalen A. Two Novel Fungal Symbionts Fusarium kuroshium sp. nov. and Graphium kuroshium sp. nov. of Kuroshio Shot Hole Borer (Euwallacea sp. nr. fornicatus) Cause Fusarium Dieback on Woody Host Species in California. Plant Disease. 102: 1154-1164. PMID 30673440 DOI: 10.1094/Pdis-07-17-1042-Re |
0.348 |
|
| 2018 |
Romsdahl J, Blachowicz A, Chiang AJ, Chiang YM, Masonjones S, Yaegashi J, Countryman S, Karouia F, Kalkum M, Stajich JE, Venkateswaran K, Wang CCC. International Space Station conditions alter genomics, proteomics, and metabolomics in Aspergillus nidulans. Applied Microbiology and Biotechnology. PMID 30539259 DOI: 10.1007/S00253-018-9525-0 |
0.816 |
|
| 2018 |
Chang Y, Desirò A, Na H, Sandor L, Lipzen A, Clum A, Barry K, Grigoriev IV, Martin FM, Stajich JE, Smith ME, Bonito G, Spatafora JW. Phylogenomics of Endogonaceae and evolution of mycorrhizas within Mucoromycota. The New Phytologist. PMID 30485448 DOI: 10.1111/Nph.15613 |
0.667 |
|
| 2018 |
Demers EG, Biermann AR, Masonjones S, Crocker AW, Ashare A, Stajich JE, Hogan DA. Evolution of drug resistance in an antifungal-naive chronic infection. Proceedings of the National Academy of Sciences of the United States of America. PMID 30389707 DOI: 10.1073/Pnas.1807698115 |
0.79 |
|
| 2018 |
Romsdahl J, Blachowicz A, Chiang AJ, Singh N, Stajich JE, Kalkum M, Venkateswaran K, Wang CCC. Characterization of Aspergillus niger Isolated from the International Space Station. Msystems. 3. PMID 30246146 DOI: 10.1128/mSystems.00112-18 |
0.316 |
|
| 2018 |
Arnesen JA, Malagocka J, Gryganskyi A, Grigoriev IV, Voigt K, Stajich JE, De Fine Licht HH. Early Diverging Insect-Pathogenic Fungi of the Order Entomophthorales Possess Diverse and Unique Subtilisin-Like Serine Proteases. G3 (Bethesda, Md.). PMID 30111619 DOI: 10.1534/G3.118.200656 |
0.439 |
|
| 2018 |
Song Z, Stajich JE, Xie Y, Liu X, He Y, Chen J, Hicks GR, Wang G. Comparative analysis reveals unexpected genome features of newly isolated Thraustochytrids strains: on ecological function and PUFAs biosynthesis. Bmc Genomics. 19: 541. PMID 30016947 DOI: 10.1186/S12864-018-4904-6 |
0.551 |
|
| 2018 |
Coleine C, Stajich JE, Zucconi L, Onofri S, Pombubpa N, Egidi E, Franks A, Buzzini P, Selbmann L. Antarctic Cryptoendolithic Fungal Communities Are Highly Adapted and Dominated by Lecanoromycetes and Dothideomycetes. Frontiers in Microbiology. 9: 1392. PMID 30008702 DOI: 10.3389/Fmicb.2018.01392 |
0.805 |
|
| 2018 |
Coleine C, Zucconi L, Onofri S, Pombubpa N, Stajich JE, Selbmann L. Sun Exposure Shapes Functional Grouping of Fungi in Cryptoendolithic Antarctic Communities. Life (Basel, Switzerland). 8. PMID 29865244 DOI: 10.3390/Life8020019 |
0.79 |
|
| 2018 |
Wang Y, Stata M, Wang W, Stajich JE, White MM, Moncalvo JM. Comparative Genomics Reveals the Core Gene Toolbox for the Fungus-Insect Symbiosis. Mbio. 9. PMID 29764946 DOI: 10.1128/Mbio.00636-18 |
0.809 |
|
| 2018 |
Gostinčar C, Stajich JE, Zupančič J, Zalar P, Gunde-Cimerman N. Genomic evidence for intraspecific hybridization in a clonal and extremely halotolerant yeast. Bmc Genomics. 19: 364. PMID 29764372 DOI: 10.1186/S12864-018-4751-5 |
0.437 |
|
| 2018 |
Cissé OH, Ma L, Wei Huang D, Khil PP, Dekker JP, Kutty G, Bishop L, Liu Y, Deng X, Hauser PM, Pagni M, Hirsch V, Lempicki RA, Stajich JE, Cuomo CA, et al. Comparative Population Genomics Analysis of the Mammalian Fungal Pathogen . Mbio. 9. PMID 29739910 DOI: 10.1128/Mbio.00381-18 |
0.748 |
|
| 2018 |
Collins CG, Stajich JE, Weber SE, Pombubpa N, Diez JM. Shrub range expansion alters diversity and distribution of soil fungal communities across an alpine elevation gradient. Molecular Ecology. PMID 29675967 DOI: 10.1111/Mec.14694 |
0.785 |
|
| 2018 |
Gryganskyi AP, Golan J, Dolatabadi S, Mondo S, Robb S, Idnurm A, Muszewska A, Steczkiewicz K, Masonjones S, Liao HL, Gajdeczka MT, Anike F, Vuek A, Anishchenko IM, Voigt K, ... ... Stajich JE, et al. Phylogenetic and Phylogenomic Definition of Species. G3 (Bethesda, Md.). PMID 29674435 DOI: 10.1534/G3.118.200235 |
0.825 |
|
| 2018 |
Kirkland TN, Muszewska A, Stajich JE. Analysis of Transposable Elements in Coccidioides Species. Journal of Fungi (Basel, Switzerland). 4. PMID 29371508 DOI: 10.3390/Jof4010013 |
0.358 |
|
| 2018 |
Leonard G, Labarre A, Milner DS, Monier A, Soanes D, Wideman JG, Maguire F, Stevens S, Sain D, Grau-Bové X, Sebé-Pedrós A, Stajich JE, Paszkiewicz K, Brown MW, Hall N, et al. Comparative genomic analysis of the 'pseudofungus' Hyphochytrium catenoides. Open Biology. 8. PMID 29321239 DOI: 10.1098/Rsob.170184 |
0.764 |
|
| 2018 |
Odebode A, Adekunle A, Stajich J. P II – 3–1 Occurrence of airborne fungal spores diversity and allergenicity in two southwestern states of nigeria Occupational and Environmental Medicine. 75. DOI: 10.1136/Oemed-2018-Iseeabstracts.109 |
0.349 |
|
| 2017 |
Short DPG, O'Donnell K, Stajich JE, Hulcr J, Kijimoto T, Berger MC, Macias AM, Spahr EJ, Bateman CC, Eskalen A, Lynch SC, Cognato AI, Cooperband MF, Kasson MT. PCR Multiplexes Discriminate Fusarium Symbionts of Invasive Euwallacea Ambrosia Beetles that Inflict Damage on Numerous Tree Species Throughout the United States. Plant Disease. 101: 233-240. PMID 30682305 DOI: 10.1094/Pdis-07-16-1046-Re |
0.403 |
|
| 2017 |
Beaudet D, Chen ECH, Mathieu S, Yildirir G, Ndikumana S, Dalpé Y, Séguin S, Farinelli L, Stajich JE, Corradi N. Ultra-low input transcriptomics reveal the spore functional content and phylogenetic affiliations of poorly studied arbuscular mycorrhizal fungi. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 29211832 DOI: 10.1093/Dnares/Dsx051 |
0.341 |
|
| 2017 |
Lu L, Chen J, Robb SMC, Okumoto Y, Stajich JE, Wessler SR. Tracking the genome-wide outcomes of a transposable element burst over decades of amplification. Proceedings of the National Academy of Sciences of the United States of America. PMID 29158416 DOI: 10.1073/Pnas.1716459114 |
0.71 |
|
| 2017 |
Park SY, Scranton MA, Stajich JE, Yee A, Walling LL. Chlorophyte aspartyl aminopeptidases: Ancient origins, expanded families, new locations, and secondary functions. Plos One. 12: e0185492. PMID 29023459 DOI: 10.1371/Journal.Pone.0185492 |
0.332 |
|
| 2017 |
Spatafora JW, Aime MC, Grigoriev IV, Martin F, Stajich JE, Blackwell M. The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies. Microbiology Spectrum. 5. PMID 28917057 DOI: 10.1128/Microbiolspec.Funk-0053-2016 |
0.667 |
|
| 2017 |
Aryal SK, Carter-House D, Stajich JE, Dillman AR. Microbial Associates of the Southern Mole Cricket (Scapteriscus borellii) are Highly Pathogenic. Journal of Invertebrate Pathology. PMID 28916147 DOI: 10.1016/J.Jip.2017.09.008 |
0.795 |
|
| 2017 |
Torres-Cruz TJ, Billingsley Tobias TL, Almatruk M, Hesse CN, Kuske CR, Desirò A, Benucci GMN, Bonito G, Stajich JE, Dunlap C, Arnold AE, Porras-Alfaro A. Bifiguratus adelaidae, gen. et sp. nov., a new member of Mucoromycotina in endophytic and soil-dwelling habitats. Mycologia. 1-16. PMID 28876195 DOI: 10.1080/00275514.2017.1364958 |
0.447 |
|
| 2017 |
Stajich JE. Fungal Genomes and Insights into the Evolution of the Kingdom. Microbiology Spectrum. 5. PMID 28820125 DOI: 10.1128/Microbiolspec.Funk-0055-2016 |
0.533 |
|
| 2017 |
Coleine C, Masonjones S, Selbmann L, Zucconi L, Onofri S, Pacelli C, Stajich JE. Draft Genome Sequences of the Antarctic Endolithic Fungi Rachicladosporium antarcticum CCFEE 5527 and Rachicladosporium sp. CCFEE 5018. Genome Announcements. 5. PMID 28684563 DOI: 10.1128/Genomea.00397-17 |
0.833 |
|
| 2017 |
Sinha S, Flibotte S, Niera M, Formby S, Plemenitaš A, Gunde Cimerman N, Lenassi M, Gostinčar C, Stajich JE, Nislow C. Insight into the Recent Genome Duplication of the Halophilic Yeast Hortaea werneckii: Combining an Improved Genome with Gene Expression and Chromatin Structure. G3 (Bethesda, Md.). PMID 28500048 DOI: 10.1534/G3.117.040691 |
0.493 |
|
| 2017 |
Mondo SJ, Dannebaum RO, Kuo RC, Louie KB, Bewick AJ, LaButti K, Haridas S, Kuo A, Salamov A, Ahrendt SR, Lau R, Bowen BP, Lipzen A, Sullivan W, Andreopoulos BB, ... ... Stajich JE, et al. Widespread adenine N6-methylation of active genes in fungi. Nature Genetics. PMID 28481340 DOI: 10.1038/Ng.3859 |
0.808 |
|
| 2017 |
Ahrendt SR, Medina EM, Chang CA, Stajich JE. Exploring the binding properties and structural stability of an opsin in the chytrid Spizellomyces punctatus using comparative and molecular modeling. Peerj. 5: e3206. PMID 28462022 DOI: 10.7717/Peerj.3206 |
0.64 |
|
| 2017 |
Nguyen TA, Cissé OH, Yun Wong J, Zheng P, Hewitt D, Nowrousian M, Stajich JE, Jedd G. Innovation and constraint leading to complex multicellularity in the Ascomycota. Nature Communications. 8: 14444. PMID 28176784 DOI: 10.1038/Ncomms14444 |
0.755 |
|
| 2017 |
Chen J, Wrightsman TR, Wessler SR, Stajich JE. RelocaTE2: a high resolution transposable element insertion site mapping tool for population resequencing. Peerj. 5: e2942. PMID 28149701 DOI: 10.7717/Peerj.2942 |
0.697 |
|
| 2016 |
Spatafora JW, Chang Y, Benny GL, Lazarus K, Smith ME, Berbee ML, Bonito G, Corradi N, Grigoriev I, Gryganskyi A, James TY, O'Donnell K, Roberson RW, Taylor TN, Uehling J, ... ... Stajich JE, et al. A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data. Mycologia. 108: 1028-1046. PMID 27738200 DOI: 10.3852/16-042 |
0.83 |
|
| 2016 |
Stajich JE. Fungal Evolution: Mucor and Phycomyces See Double. Current Biology : Cb. 26: R775-7. PMID 27554660 DOI: 10.1016/J.Cub.2016.06.049 |
0.443 |
|
| 2016 |
Castanera R, López-Varas L, Borgognone A, LaButti K, Lapidus A, Schmutz J, Grimwood J, Pérez G, Pisabarro AG, Grigoriev IV, Stajich JE, Ramírez L. Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles. Plos Genetics. 12: e1006108. PMID 27294409 DOI: 10.1371/Journal.Pgen.1006108 |
0.498 |
|
| 2016 |
Lee MJ, Geller AM, Bamford NC, Liu H, Gravelat FN, Snarr BD, Le Mauff F, Chabot J, Ralph B, Ostapska H, Lehoux M, Cerone RP, Baptista SD, Vinogradov E, Stajich JE, et al. Deacetylation of Fungal Exopolysaccharide Mediates Adhesion and Biofilm Formation. Mbio. 7. PMID 27048799 DOI: 10.1128/Mbio.00252-16 |
0.347 |
|
| 2016 |
de Man TJ, Stajich JE, Kubicek CP, Teiling C, Chenthamara K, Atanasova L, Druzhinina IS, Levenkova N, Birnbaum SS, Barribeau SM, Bozick BA, Suen G, Currie CR, Gerardo NM. Small genome of the fungus Escovopsis weberi, a specialized disease agent of ant agriculture. Proceedings of the National Academy of Sciences of the United States of America. PMID 26976598 DOI: 10.1073/Pnas.1518501113 |
0.472 |
|
| 2016 |
U'Ren JM, Miadlikowska J, Zimmerman NB, Lutzoni F, Stajich JE, Elizabeth Arnold A. Contributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota). Molecular Phylogenetics and Evolution. PMID 26903035 DOI: 10.1016/J.Ympev.2016.02.010 |
0.427 |
|
| 2015 |
Momany M, Di Pietro A, Alexander WG, Barker BM, Harb OS, Kamoun S, Martin F, Pires JC, Stajich JE, Thomma BP, Unruh S. Meeting Report: Fungal Genomics Meets Social Media: Highlights of the 28th Fungal Genetics Conference at Asilomar. G3 (Bethesda, Md.). 5: 2523-5. PMID 27034999 DOI: 10.1534/G3.115.024158 |
0.337 |
|
| 2015 |
Wang Y, Smith KM, Taylor JW, Freitag M, Stajich JE. Endogenous Small RNA Mediates Meiotic Silencing of a Novel DNA Transposon. G3 (Bethesda, Md.). PMID 26109355 DOI: 10.1534/G3.115.017921 |
0.641 |
|
| 2015 |
Liu P, Stajich JE. Characterization of the Carbohydrate Binding Module 18 gene family in the amphibian pathogen Batrachochytrium dendrobatidis. Fungal Genetics and Biology : Fg & B. 77: 31-9. PMID 25819009 DOI: 10.1016/J.Fgb.2015.03.003 |
0.427 |
|
| 2015 |
Collins RA, Stajich JE, Field DJ, Olive JE, DeAbreu DM. The low information content of Neurospora splicing signals: implications for RNA splicing and intron origin. Rna (New York, N.Y.). 21: 997-1004. PMID 25805857 DOI: 10.1261/Rna.047985.114 |
0.39 |
|
| 2015 |
Kennedy P, Stajich J. Twenty-first century mycology: a diverse, collaborative, and highly relevant science. The New Phytologist. 205: 23-6. PMID 25427217 DOI: 10.1111/Nph.13165 |
0.623 |
|
| 2015 |
Mélida H, Sain D, Stajich JE, Bulone V. Deciphering the uniqueness of Mucoromycotina cell walls by combining biochemical and phylogenomic approaches. Environmental Microbiology. 17: 1649-62. PMID 25143134 DOI: 10.1111/1462-2920.12601 |
0.699 |
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| 2015 |
Stajich JE. Phylogenomics enabling genome-based mycology The Mycota: a Comprehensive Treatise On Fungi as Experimental Systems For Basic and Applied Research: Vii Systematics and Evolution Part B 2nd Edition. 279-294. DOI: 10.1007/978-3-662-46011-5_11 |
0.331 |
|
| 2014 |
Teixeira MM, de Almeida LG, Kubitschek-Barreira P, Alves FL, Kioshima ES, Abadio AK, Fernandes L, Derengowski LS, Ferreira KS, Souza RC, Ruiz JC, de Andrade NC, Paes HC, Nicola AM, Albuquerque P, ... ... Stajich JE, et al. Comparative genomics of the major fungal agents of human and animal Sporotrichosis: Sporothrix schenckii and Sporothrix brasiliensis. Bmc Genomics. 15: 943. PMID 25351875 DOI: 10.1186/1471-2164-15-943 |
0.492 |
|
| 2014 |
Ouyang S, Park G, Atamian HS, Han CS, Stajich JE, Kaloshian I, Borkovich KA. MicroRNAs suppress NB domain genes in tomato that confer resistance to Fusarium oxysporum. Plos Pathogens. 10: e1004464. PMID 25330340 DOI: 10.1371/Journal.Ppat.1004464 |
0.627 |
|
| 2014 |
Treseder KK, Maltz MR, Hawkins BA, Fierer N, Stajich JE, McGuire KL. Evolutionary histories of soil fungi are reflected in their large-scale biogeography. Ecology Letters. 17: 1086-93. PMID 24912000 DOI: 10.1111/Ele.12311 |
0.364 |
|
| 2014 |
Inglis DO, Skrzypek MS, Liaw E, Moktali V, Sherlock G, Stajich JE. Literature-based gene curation and proposed genetic nomenclature for cryptococcus. Eukaryotic Cell. 13: 878-83. PMID 24813190 DOI: 10.1128/Ec.00083-14 |
0.413 |
|
| 2014 |
Janbon G, Ormerod KL, Paulet D, Byrnes EJ, Yadav V, Chatterjee G, Mullapudi N, Hon CC, Billmyre RB, Brunel F, Bahn YS, Chen W, Chen Y, Chow EW, Coppée JY, ... ... Stajich JE, et al. Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation. Plos Genetics. 10: e1004261. PMID 24743168 DOI: 10.1371/Journal.Pgen.1004261 |
0.69 |
|
| 2014 |
Sachs JL, Skophammer RG, Bansal N, Stajich JE. Evolutionary origins and diversification of proteobacterial mutualists. Proceedings. Biological Sciences / the Royal Society. 281: 20132146. PMID 24285193 DOI: 10.1098/Rspb.2013.2146 |
0.402 |
|
| 2014 |
Glass EM, Dribinsky Y, Yilmaz P, Levin H, Van Pelt R, Wendel D, Wilke A, Eisen JA, Huse S, Shipanova A, Sogin M, Stajich J, Knight R, Meyer F, Schriml LM. MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment. The Isme Journal. 8: 1-3. PMID 24152717 DOI: 10.1038/Ismej.2013.176 |
0.314 |
|
| 2013 |
Gioti A, Stajich JE, Johannesson H. Neurospora and the dead-end hypothesis: genomic consequences of selfing in the model genus. Evolution; International Journal of Organic Evolution. 67: 3600-16. PMID 24299411 DOI: 10.1111/Evo.12206 |
0.667 |
|
| 2013 |
Traeger S, Altegoer F, Freitag M, Gabaldon T, Kempken F, Kumar A, Marcet-Houben M, Pöggeler S, Stajich JE, Nowrousian M. The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution. Plos Genetics. 9: e1003820. PMID 24068976 DOI: 10.1371/Journal.Pgen.1003820 |
0.504 |
|
| 2013 |
Bates ST, Ahrendt S, Bik HM, Bruns TD, Caporaso JG, Cole J, Dwan M, Fierer N, Gu D, Houston S, Knight R, Leff J, Lewis C, Maestre JP, McDonald D, ... ... Stajich JE, et al. Meeting report: fungal its workshop (october 2012). Standards in Genomic Sciences. 8: 118-23. PMID 23961317 DOI: 10.4056/Sigs.3737409 |
0.733 |
|
| 2013 |
Gryganskyi AP, Humber RA, Stajich JE, Mullens B, Anishchenko IM, Vilgalys R. Sequential utilization of hosts from different fly families by genetically distinct, sympatric populations within the Entomophthora muscae species complex. Plos One. 8: e71168. PMID 23951101 DOI: 10.1371/Journal.Pone.0071168 |
0.38 |
|
| 2013 |
James TY, Pelin A, Bonen L, Ahrendt S, Sain D, Corradi N, Stajich JE. Shared signatures of parasitism and phylogenomics unite Cryptomycota and microsporidia. Current Biology : Cb. 23: 1548-53. PMID 23932404 DOI: 10.1016/J.Cub.2013.06.057 |
0.834 |
|
| 2013 |
Hibbett DS, Stajich JE, Spatafora JW. Toward genome-enabled mycology. Mycologia. 105: 1339-49. PMID 23928422 DOI: 10.3852/13-196 |
0.667 |
|
| 2013 |
Rosenblum EB, James TY, Zamudio KR, Poorten TJ, Ilut D, Rodriguez D, Eastman JM, Richards-Hrdlicka K, Joneson S, Jenkinson TS, Longcore JE, Parra Olea G, Toledo LF, Arellano ML, Medina EM, ... ... Stajich JE, et al. Complex history of the amphibian-killing chytrid fungus revealed with genome resequencing data. Proceedings of the National Academy of Sciences of the United States of America. 110: 9385-90. PMID 23650365 DOI: 10.1073/Pnas.1300130110 |
0.692 |
|
| 2013 |
Robb SM, Lu L, Valencia E, Burnette JM, Okumoto Y, Wessler SR, Stajich JE. The use of RelocaTE and unassembled short reads to produce high-resolution snapshots of transposable element generated diversity in rice. G3 (Bethesda, Md.). 3: 949-57. PMID 23576519 DOI: 10.1534/G3.112.005348 |
0.806 |
|
| 2013 |
Jamieson K, Rountree MR, Lewis ZA, Stajich JE, Selker EU. Regional control of histone H3 lysine 27 methylation in Neurospora. Proceedings of the National Academy of Sciences of the United States of America. 110: 6027-32. PMID 23530226 DOI: 10.1073/Pnas.1303750110 |
0.319 |
|
| 2013 |
Cheng CK, Au CH, Wilke SK, Stajich JE, Zolan ME, Pukkila PJ, Kwan HS. 5'-Serial Analysis of Gene Expression studies reveal a transcriptomic switch during fruiting body development in Coprinopsis cinerea. Bmc Genomics. 14: 195. PMID 23514374 DOI: 10.1186/1471-2164-14-195 |
0.323 |
|
| 2013 |
Gioti A, Nystedt B, Li W, Xu J, Andersson A, Averette AF, Münch K, Wang X, Kappauf C, Kingsbury JM, Kraak B, Walker LA, Johansson HJ, Holm T, Lehtiö J, ... Stajich JE, et al. Genomic insights into the atopic eczema-associated skin commensal yeast Malassezia sympodialis. Mbio. 4: e00572-12. PMID 23341551 DOI: 10.1128/Mbio.00572-12 |
0.486 |
|
| 2013 |
Fisher MC, Stajich JE, Farrer RA. Emergence of the Chytrid Fungus Batrachochytrium Dendrobatidis and Global Amphibian Declines Evolution of Virulence in Eukaryotic Microbes. 461-472. DOI: 10.1002/9781118308165.ch24 |
0.416 |
|
| 2012 |
Nygren K, Wallberg A, Samils N, Stajich JE, Townsend JP, Karlsson M, Johannesson H. Analyses of expressed sequence tags in Neurospora reveal rapid evolution of genes associated with the early stages of sexual reproduction in fungi. Bmc Evolutionary Biology. 12: 229. PMID 23186325 DOI: 10.1186/1471-2148-12-229 |
0.746 |
|
| 2012 |
Abramyan J, Stajich JE. Species-specific chitin-binding module 18 expansion in the amphibian pathogen Batrachochytrium dendrobatidis. Mbio. 3: e00150-12. PMID 22718849 DOI: 10.1128/Mbio.00150-12 |
0.8 |
|
| 2012 |
Gioti A, Mushegian AA, Strandberg R, Stajich JE, Johannesson H. Unidirectional evolutionary transitions in fungal mating systems and the role of transposable elements. Molecular Biology and Evolution. 29: 3215-26. PMID 22593224 DOI: 10.1093/Molbev/Mss132 |
0.668 |
|
| 2012 |
Stajich JE, Harris T, Brunk BP, Brestelli J, Fischer S, Harb OS, Kissinger JC, Li W, Nayak V, Pinney DF, Stoeckert CJ, Roos DS. FungiDB: an integrated functional genomics database for fungi. Nucleic Acids Research. 40: D675-81. PMID 22064857 DOI: 10.1093/Nar/Gkr918 |
0.474 |
|
| 2011 |
Joneson S, Stajich JE, Shiu SH, Rosenblum EB. Genomic transition to pathogenicity in chytrid fungi. Plos Pathogens. 7: e1002338. PMID 22072962 DOI: 10.1371/Journal.Ppat.1002338 |
0.506 |
|
| 2011 |
Ellison CE, Stajich JE, Jacobson DJ, Natvig DO, Lapidus A, Foster B, Aerts A, Riley R, Lindquist EA, Grigoriev IV, Taylor JW. Massive changes in genome architecture accompany the transition to self-fertility in the filamentous fungus Neurospora tetrasperma. Genetics. 189: 55-69. PMID 21750257 DOI: 10.1534/Genetics.111.130690 |
0.809 |
|
| 2011 |
D'Souza CA, Kronstad JW, Taylor G, Warren R, Yuen M, Hu G, Jung WH, Sham A, Kidd SE, Tangen K, Lee N, Zeilmaker T, Sawkins J, McVicker G, Shah S, ... ... Stajich JE, et al. Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts. Mbio. 2: e00342-10. PMID 21304167 DOI: 10.1128/Mbio.00342-10 |
0.477 |
|
| 2010 |
Rosenblum EB, Fisher MC, James TY, Stajich JE, Longcore JE, Gentry LR, Poorten TJ. A molecular perspective: biology of the emerging pathogen Batrachochytrium dendrobatidis. Diseases of Aquatic Organisms. 92: 131-47. PMID 21268975 DOI: 10.3354/Dao02179 |
0.74 |
|
| 2010 |
Burns C, Stajich JE, Rechtsteiner A, Casselton L, Hanlon SE, Wilke SK, Savytskyy OP, Gathman AC, Lilly WW, Lieb JD, Zolan ME, Pukkila PJ. Analysis of the Basidiomycete Coprinopsis cinerea reveals conservation of the core meiotic expression program over half a billion years of evolution. Plos Genetics. 6: e1001135. PMID 20885784 DOI: 10.1371/Journal.Pgen.1001135 |
0.339 |
|
| 2010 |
McKay SJ, Vergara IA, Stajich JE. Using the Generic Synteny Browser (GBrowse_syn). Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 9.12. PMID 20836076 DOI: 10.1002/0471250953.Bi0912S31 |
0.441 |
|
| 2010 |
Lévesque CA, Brouwer H, Cano L, Hamilton JP, Holt C, Huitema E, Raffaele S, Robideau GP, Thines M, Win J, Zerillo MM, Beakes GW, Boore JL, Busam D, Dumas B, ... ... Stajich JE, et al. Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire. Genome Biology. 11: R73. PMID 20626842 DOI: 10.1186/Gb-2010-11-7-R73 |
0.516 |
|
| 2010 |
Ohm RA, de Jong JF, Lugones LG, Aerts A, Kothe E, Stajich JE, de Vries RP, Record E, Levasseur A, Baker SE, Bartholomew KA, Coutinho PM, Erdmann S, Fowler TJ, Gathman AC, et al. Genome sequence of the model mushroom Schizophyllum commune. Nature Biotechnology. 28: 957-63. PMID 20622885 DOI: 10.1038/Nbt.1643 |
0.408 |
|
| 2010 |
Strandberg R, Nygren K, Menkis A, James TY, Wik L, Stajich JE, Johannesson H. Conflict between reproductive gene trees and species phylogeny among heterothallic and pseudohomothallic members of the filamentous ascomycete genus Neurospora. Fungal Genetics and Biology : Fg & B. 47: 869-78. PMID 20601044 DOI: 10.1016/J.Fgb.2010.06.008 |
0.741 |
|
| 2010 |
Stajich JE, Wilke SK, Ahrén D, Au CH, Birren BW, Borodovsky M, Burns C, Canbäck B, Casselton LA, Cheng CK, Deng J, Dietrich FS, Fargo DC, Farman ML, Gathman AC, et al. Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus). Proceedings of the National Academy of Sciences of the United States of America. 107: 11889-94. PMID 20547848 DOI: 10.1073/Pnas.1003391107 |
0.806 |
|
| 2010 |
Neafsey DE, Barker BM, Sharpton TJ, Stajich JE, Park DJ, Whiston E, Hung CY, McMahan C, White J, Sykes S, Heiman D, Young S, Zeng Q, Abouelleil A, Aftuck L, et al. Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control. Genome Research. 20: 938-46. PMID 20516208 DOI: 10.1101/Gr.103911.109 |
0.839 |
|
| 2010 |
Nowrousian M, Stajich JE, Chu M, Engh I, Espagne E, Halliday K, Kamerewerd J, Kempken F, Knab B, Kuo HC, Osiewacz HD, Pöggeler S, Read ND, Seiler S, Smith KM, et al. De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis. Plos Genetics. 6: e1000891. PMID 20386741 DOI: 10.1371/Journal.Pgen.1000891 |
0.491 |
|
| 2010 |
Rosenblum EB, Voyles J, Poorten TJ, Stajich JE. The deadly chytrid fungus: a story of an emerging pathogen. Plos Pathogens. 6: e1000550. PMID 20126439 DOI: 10.1371/Journal.Ppat.1000550 |
0.384 |
|
| 2009 |
Stajich JE, Berbee ML, Blackwell M, Hibbett DS, James TY, Spatafora JW, Taylor JW. The fungi. Current Biology : Cb. 19: R840-5. PMID 19788875 DOI: 10.1016/J.Cub.2009.07.004 |
0.85 |
|
| 2009 |
Sharpton TJ, Stajich JE, Rounsley SD, Gardner MJ, Wortman JR, Jordar VS, Maiti R, Kodira CD, Neafsey DE, Zeng Q, Hung CY, McMahan C, Muszewska A, Grynberg M, Mandel MA, et al. Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives. Genome Research. 19: 1722-31. PMID 19717792 DOI: 10.1101/Gr.087551.108 |
0.817 |
|
| 2009 |
Fisher MC, Bosch J, Yin Z, Stead DA, Walker J, Selway L, Brown AJ, Walker LA, Gow NA, Stajich JE, Garner TW. Proteomic and phenotypic profiling of the amphibian pathogen Batrachochytrium dendrobatidis shows that genotype is linked to virulence. Molecular Ecology. 18: 415-29. PMID 19161465 DOI: 10.1111/J.1365-294X.2008.04041.X |
0.557 |
|
| 2008 |
Regier JC, Shultz JW, Ganley AR, Hussey A, Shi D, Ball B, Zwick A, Stajich JE, Cummings MP, Martin JW, Cunningham CW. Resolving arthropod phylogeny: exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence. Systematic Biology. 57: 920-38. PMID 19085333 DOI: 10.1080/10635150802570791 |
0.37 |
|
| 2008 |
Rosenblum EB, Stajich JE, Maddox N, Eisen MB. Global gene expression profiles for life stages of the deadly amphibian pathogen Batrachochytrium dendrobatidis. Proceedings of the National Academy of Sciences of the United States of America. 105: 17034-9. PMID 18852473 DOI: 10.1073/Pnas.0804173105 |
0.374 |
|
| 2008 |
Bruns TD, Blackwell M, Edwards I, Taylor AFS, Horton T, Zhang N, Kõljalg U, May G, Kuyper TW, Bever JD, Gilbert G, Taylor JW, DeSantis TZ, Pringle A, Borneman J, ... ... Stajich J, et al. Preserving accuracy in GenBank Science. 319: 1616. PMID 18356505 DOI: 10.1126/Science.319.5870.1616A |
0.76 |
|
| 2008 |
Martin F, Aerts A, Ahrén D, Brun A, Danchin EG, Duchaussoy F, Gibon J, Kohler A, Lindquist E, Pereda V, Salamov A, Shapiro HJ, Wuyts J, Blaudez D, Buée M, ... ... Stajich JE, et al. The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature. 452: 88-92. PMID 18322534 DOI: 10.1038/Nature06556 |
0.467 |
|
| 2008 |
Lilly WW, Stajich JE, Pukkila PJ, Wilke SK, Inoguchi N, Gathman AC. An expanded family of fungalysin extracellular metallopeptidases of Coprinopsis cinerea. Mycological Research. 112: 389-98. PMID 18313909 DOI: 10.1016/J.Mycres.2007.11.013 |
0.369 |
|
| 2008 |
Hu G, Liu I, Sham A, Stajich JE, Dietrich FS, Kronstad JW. Comparative hybridization reveals extensive genome variation in the AIDS-associated pathogen Cryptococcus neoformans. Genome Biology. 9: R41. PMID 18294377 DOI: 10.1186/Gb-2008-9-2-R41 |
0.645 |
|
| 2007 |
Stajich JE. An Introduction to BioPerl. Methods in Molecular Biology (Clifton, N.J.). 406: 535-48. PMID 18287711 DOI: 10.1007/978-1-59745-535-0_26 |
0.345 |
|
| 2007 |
Stajich JE, Dietrich FS, Roy SW. Comparative genomic analysis of fungal genomes reveals intron-rich ancestors. Genome Biology. 8: R223. PMID 17949488 DOI: 10.1186/Gb-2007-8-10-R223 |
0.682 |
|
| 2007 |
Fraser JA, Stajich JE, Tarcha EJ, Cole GT, Inglis DO, Sil A, Heitman J. Evolution of the mating type locus: insights gained from the dimorphic primary fungal pathogens Histoplasma capsulatum, Coccidioides immitis, and Coccidioides posadasii. Eukaryotic Cell. 6: 622-9. PMID 17337636 DOI: 10.1128/Ec.00018-07 |
0.499 |
|
| 2007 |
Harrison LB, Yu Z, Stajich JE, Dietrich FS, Harrison PM. Evolution of budding yeast prion-determinant sequences across diverse fungi. Journal of Molecular Biology. 368: 273-82. PMID 17320905 DOI: 10.1016/J.Jmb.2007.01.070 |
0.576 |
|
| 2007 |
Erwin TA, Jewell EG, Love CG, Lim GA, Li X, Chapman R, Batley J, Stajich JE, Mongin E, Stupka E, Ross B, Spangenberg G, Edwards D. BASC: an integrated bioinformatics system for Brassica research. Nucleic Acids Research. 35: D870-3. PMID 17148473 DOI: 10.1093/Nar/Gkl998 |
0.462 |
|
| 2006 |
Demuth JP, De Bie T, Stajich JE, Cristianini N, Hahn MW. The evolution of mammalian gene families. Plos One. 1: e85. PMID 17183716 DOI: 10.1371/Journal.Pone.0000085 |
0.401 |
|
| 2006 |
Fitzpatrick DA, Logue ME, Stajich JE, Butler G. A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis. Bmc Evolutionary Biology. 6: 99. PMID 17121679 DOI: 10.1186/1471-2148-6-99 |
0.526 |
|
| 2006 |
Kämper J, Kahmann R, Bölker M, Ma LJ, Brefort T, Saville BJ, Banuett F, Kronstad JW, Gold SE, Müller O, Perlin MH, Wösten HA, de Vries R, Ruiz-Herrera J, Reynaga-Peña CG, ... ... Stajich JE, et al. Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Nature. 444: 97-101. PMID 17080091 DOI: 10.1038/Nature05248 |
0.481 |
|
| 2006 |
James TY, Kauff F, Schoch CL, Matheny PB, Hofstetter V, Cox CJ, Celio G, Gueidan C, Fraker E, Miadlikowska J, Lumbsch HT, Rauhut A, Reeb V, Arnold AE, Amtoft A, ... Stajich JE, et al. Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature. 443: 818-22. PMID 17051209 DOI: 10.1038/Nature05110 |
0.811 |
|
| 2006 |
Coghlan A, Stajich JE, Harris TW. Comparative genomics in C. elegans, C. briggsae, and other Caenorhabditis species. Methods in Molecular Biology (Clifton, N.J.). 351: 13-29. PMID 16988423 DOI: 10.1385/1-59745-151-7:13 |
0.449 |
|
| 2006 |
Giles SS, Stajich JE, Nichols C, Gerrald QD, Alspaugh JA, Dietrich F, Perfect JR. The Cryptococcus neoformans catalase gene family and its role in antioxidant defense. Eukaryotic Cell. 5: 1447-59. PMID 16963629 DOI: 10.1128/Ec.00098-06 |
0.57 |
|
| 2006 |
Cramer RA, Stajich JE, Yamanaka Y, Dietrich FS, Steinbach WJ, Perfect JR. Phylogenomic analysis of non-ribosomal peptide synthetases in the genus Aspergillus. Gene. 383: 24-32. PMID 16962256 DOI: 10.1016/J.Gene.2006.07.008 |
0.635 |
|
| 2006 |
Stajich JE, Dietrich FS. Evidence of mRNA-mediated intron loss in the human-pathogenic fungus Cryptococcus neoformans. Eukaryotic Cell. 5: 789-93. PMID 16682456 DOI: 10.1128/Ec.5.5.789-793.2006 |
0.627 |
|
| 2005 |
Fraser JA, Giles SS, Wenink EC, Geunes-Boyer SG, Wright JR, Diezmann S, Allen A, Stajich JE, Dietrich FS, Perfect JR, Heitman J. Same-sex mating and the origin of the Vancouver Island Cryptococcus gattii outbreak. Nature. 437: 1360-4. PMID 16222245 DOI: 10.1038/Nature04220 |
0.794 |
|
| 2005 |
Leman SC, Chen Y, Stajich JE, Noor MA, Uyenoyama MK. Likelihoods from summary statistics: recent divergence between species. Genetics. 171: 1419-36. PMID 16143628 DOI: 10.1534/Genetics.104.040402 |
0.348 |
|
| 2005 |
Hahn MW, De Bie T, Stajich JE, Nguyen C, Cristianini N. Estimating the tempo and mode of gene family evolution from comparative genomic data. Genome Research. 15: 1153-60. PMID 16077014 DOI: 10.1101/Gr.3567505 |
0.406 |
|
| 2005 |
Mitreva M, McCarter JP, Arasu P, Hawdon J, Martin J, Dante M, Wylie T, Xu J, Stajich JE, Kapulkin W, Clifton SW, Waterston RH, Wilson RK. Investigating hookworm genomes by comparative analysis of two Ancylostoma species. Bmc Genomics. 6: 58. PMID 15854223 DOI: 10.1186/1471-2164-6-58 |
0.387 |
|
| 2005 |
Stajich JE, Hahn MW. Disentangling the effects of demography and selection in human history. Molecular Biology and Evolution. 22: 63-73. PMID 15356276 DOI: 10.1093/Molbev/Msh252 |
0.337 |
|
| 2004 |
Kraus PR, Boily MJ, Giles SS, Stajich JE, Allen A, Cox GM, Dietrich FS, Perfect JR, Heitman J. Identification of Cryptococcus neoformans temperature-regulated genes with a genomic-DNA microarray. Eukaryotic Cell. 3: 1249-60. PMID 15470254 DOI: 10.1128/Ec.3.5.1249-1260.2004 |
0.598 |
|
| 2003 |
Stein LD, Bao Z, Blasiar D, Blumenthal T, Brent MR, Chen N, Chinwalla A, Clarke L, Clee C, Coghlan A, Coulson A, D'Eustachio P, Fitch DH, Fulton LA, Fulton RE, ... ... Stajich JE, et al. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Plos Biology. 1: E45. PMID 14624247 DOI: 10.1371/Journal.Pbio.0000045 |
0.426 |
|
| 2003 |
Hahn MW, Stajich JE, Wray GA. The effects of selection against spurious transcription factor binding sites. Molecular Biology and Evolution. 20: 901-6. PMID 12716998 DOI: 10.1093/Molbev/Msg096 |
0.379 |
|
| 2002 |
Stein LD, Mungall C, Shu S, Caudy M, Mangone M, Day A, Nickerson E, Stajich JE, Harris TW, Arva A, Lewis S. The generic genome browser: a building block for a model organism system database. Genome Research. 12: 1599-610. PMID 12368253 DOI: 10.1101/Gr.403602 |
0.389 |
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