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James E. Gomez, Ph.D. - Publications

Affiliations: 
Harvard University, Cambridge, MA, United States 
 2000 Johns Hopkins University, Baltimore, MD 
Area:
Microbiology Biology, Genetics, Molecular Biology
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29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Sturm A, Sun P, Avila-Pacheco J, Clatworthy AE, Bloom-Ackermann Z, Wuo MG, Gomez JE, Jin S, Clish CB, Kiessling LL, Hung DT. Genetic factors affecting storage and utilization of lipids during dormancy in . Mbio. e0320823. PMID 38236034 DOI: 10.1128/mbio.03208-23  0.563
2023 Ahmed S, Chowdhury S, Gomez J, Hung DT, Parish T. Benzene Amide Ether Scaffold is Active against Non-replicating and Intracellular . Acs Infectious Diseases. PMID 37708378 DOI: 10.1021/acsinfecdis.3c00275  0.541
2023 Thakku SG, Lirette J, Murugesan K, Chen J, Theron G, Banaei N, Blainey PC, Gomez J, Wong SY, Hung DT. Genome-wide tiled detection of circulating Mycobacterium tuberculosis cell-free DNA using Cas13. Nature Communications. 14: 1803. PMID 37002219 DOI: 10.1038/s41467-023-37183-8  0.557
2023 Zhang S, Ma P, Orzechowski M, Lemmer A, Rzasa K, Bagnall J, Barkho S, Chen M, He L, Neitupski R, Tran V, Ackerman R, Gath E, Bond A, Frongillo G, ... ... Gomez J, et al. High-Throughput Neutralization and Serology Assays Reveal Correlated but Highly Variable Humoral Immune Responses in a Large Population of Individuals Infected with SARS-CoV-2 in the US between March and August 2020. Mbio. e0352322. PMID 36786604 DOI: 10.1128/mbio.03523-22  0.512
2022 Woolley AE, Dryden-Peterson S, Kim A, Naz-McLean S, Kelly C, Laibinis HH, Bagnall J, Livny J, Ma P, Orzechowski M, Gomez J, Shoresh N, Gabriel S, Hung DT, Cosimi LA. At-home Testing and Risk Factors for Acquisition of SARS-CoV-2 Infection in a Major US Metropolitan Area. Open Forum Infectious Diseases. 9: ofac505. PMID 36381614 DOI: 10.1093/ofid/ofac505  0.475
2022 Pita-Juarez Y, Karagkouni D, Kalavros N, Melms JC, Niezen S, Delorey TM, Essene AL, Brook OR, Pant D, Skelton-Badlani D, Naderi P, Huang P, Pan L, Hether T, Andrews TS, ... ... Gomez J, et al. A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients. Biorxiv : the Preprint Server For Biology. PMID 36324805 DOI: 10.1101/2022.10.27.514070  0.486
2021 Di Germanio C, Simmons G, Kelly K, Martinelli R, Darst O, Azimpouran M, Stone M, Hazegh K, Grebe E, Zhang S, Ma P, Orzechowski M, Gomez JE, Livny J, Hung DT, et al. SARS-CoV-2 Antibody persistence in COVID-19 convalescent plasma donors: Dependency on assay format and applicability to serosurveillance. Transfusion. PMID 34121205 DOI: 10.1111/trf.16555  0.489
2021 Delorey TM, Ziegler CGK, Heimberg G, Normand R, Yang Y, Segerstolpe Å, Abbondanza D, Fleming SJ, Subramanian A, Montoro DT, Jagadeesh KA, Dey KK, Sen P, Slyper M, Pita-Juárez YH, ... ... Gomez J, et al. COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets. Nature. PMID 33915569 DOI: 10.1038/s41586-021-03570-8  0.513
2021 Delorey TM, Ziegler CGK, Heimberg G, Normand R, Yang Y, Segerstolpe A, Abbondanza D, Fleming SJ, Subramanian A, Montoro DT, Jagadeesh KA, Dey KK, Sen P, Slyper M, Pita-Juárez YH, ... ... Gomez J, et al. A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2. Biorxiv : the Preprint Server For Biology. PMID 33655247 DOI: 10.1101/2021.02.25.430130  0.514
2019 Johnson EO, LaVerriere E, Office E, Stanley M, Meyer E, Kawate T, Gomez JE, Audette RE, Bandyopadhyay N, Betancourt N, Delano K, Da Silva I, Davis J, Gallo C, Gardner M, et al. Large-scale chemical-genetics yields new M. tuberculosis inhibitor classes. Nature. PMID 31217586 DOI: 10.1038/S41586-019-1315-Z  0.585
2018 Fang C, Lee KK, Nietupski R, Bates RH, Fernandez-Menendez R, Lopez-Roman EM, Guijarro-Lopez L, Yin Y, Peng Z, Gomez JE, Fisher S, Barros-Aguirre D, Hubbard BK, Serrano-Wu MH, Hung DT. Discovery of heterocyclic replacements for the coumarin core of anti-tubercular FadD32 inhibitors. Bioorganic & Medicinal Chemistry Letters. PMID 30316633 DOI: 10.1016/J.Bmcl.2018.09.037  0.564
2017 Gomez JE, Kaufmann-Malaga BB, Wivagg CN, Kim PB, Silvis MR, Renedo N, Ioerger TR, Ahmad R, Livny J, Fishbein S, Sacchettini JC, Carr SA, Hung DT. Ribosomal mutations promote the evolution of antibiotic resistance in a multidrug environment. Elife. 6. PMID 28220755 DOI: 10.7554/Elife.20420  0.589
2017 Kim S, De Jonghe J, Kulesa AB, Feldman D, Vatanen T, Bhattacharyya RP, Berdy B, Gomez J, Nolan J, Epstein S, Blainey PC. High-throughput automated microfluidic sample preparation for accurate microbial genomics. Nature Communications. 8: 13919. PMID 28128213 DOI: 10.1038/Ncomms13919  0.315
2017 Manson AL, Cohen KA, Abeel T, Desjardins CA, Armstrong DT, Barry CE, Brand J, Chapman SB, Cho SN, Gabrielian A, Gomez J, Jodals AM, Joloba M, Jureen P, et al. Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance. Nature Genetics. PMID 28092681 DOI: 10.1038/Ng.3767  0.586
2017 Gomez JE, Kaufmann-Malaga BB, Wivagg CN, Kim PB, Silvis MR, Renedo N, Ioerger TR, Ahmad R, Livny J, Fishbein S, Sacchettini JC, Carr SA, Hung DT. Author response: Ribosomal mutations promote the evolution of antibiotic resistance in a multidrug environment Elife. DOI: 10.7554/Elife.20420.025  0.568
2016 Wivagg CN, Wellington S, Gomez JE, Hung DT. Loss of a Class A Penicillin-Binding Protein Alters β-Lactam Susceptibilities in Mycobacterium tuberculosis. Acs Infectious Diseases. 2: 104-10. PMID 27624961 DOI: 10.1021/Acsinfecdis.5B00119  0.586
2016 Zhang D, Gomez JE, Chien JY, Haseley N, Desjardins CA, Earl AM, Hsueh PR, Hung DT. Genomic analysis of the evolution of fluoroquinolone resistance in Mycobacterium tuberculosis prior to tuberculosis diagnosis. Antimicrobial Agents and Chemotherapy. PMID 27572408 DOI: 10.1128/Aac.00664-16  0.638
2012 Barczak AK, Gomez JE, Kaufmann BB, Hinson ER, Cosimi L, Borowsky ML, Onderdonk AB, Stanley SA, Kaur D, Bryant KF, Knipe DM, Sloutsky A, Hung DT. RNA signatures allow rapid identification of pathogens and antibiotic susceptibilities. Proceedings of the National Academy of Sciences of the United States of America. 109: 6217-22. PMID 22474362 DOI: 10.1073/Pnas.1119540109  0.605
2012 Weiner B, Gomez J, Victor TC, Warren RM, Sloutsky A, Plikaytis BB, Posey JE, van Helden PD, Gey van Pittius NC, Koehrsen M, Sisk P, Stolte C, White J, Gagneux S, Birren B, et al. Independent large scale duplications in multiple M. tuberculosis lineages overlapping the same genomic region. Plos One. 7: e26038. PMID 22347359 DOI: 10.1371/Journal.Pone.0026038  0.612
2011 Gomez JE, Clatworthy A, Hung DT. Probing bacterial pathogenesis with genetics, genomics, and chemical biology: past, present, and future approaches. Critical Reviews in Biochemistry and Molecular Biology. 46: 41-66. PMID 21250782 DOI: 10.3109/10409238.2010.538663  0.554
2009 Nusbaum C, Ohsumi TK, Gomez J, Aquadro J, Victor TC, Warren RM, Hung DT, Birren BW, Lander ES, Jaffe DB. Sensitive, specific polymorphism discovery in bacteria using massively parallel sequencing. Nature Methods. 6: 67-9. PMID 19079253 DOI: 10.1038/Nmeth.1286  0.582
2005 Muñoz-Elías EJ, Timm J, Botha T, Chan WT, Gomez JE, McKinney JD. Replication dynamics of Mycobacterium tuberculosis in chronically infected mice. Infection and Immunity. 73: 546-51. PMID 15618194 DOI: 10.1128/Iai.73.1.546-551.2005  0.571
2005 Gomez JE, McKinney JD. Consumed in the city Observing tuberculosis at century‘s end Journal of Clinical Investigation. 115: 484-484. DOI: 10.1172/Jci24576  0.302
2004 Hisert KB, Kirksey MA, Gomez JE, Sousa AO, Cox JS, Jacobs WR, Nathan CF, McKinney JD. Identification of Mycobacterium tuberculosis counterimmune (cim) mutants in immunodeficient mice by differential screening. Infection and Immunity. 72: 5315-21. PMID 15322028 DOI: 10.1128/Iai.72.9.5315-5321.2004  0.596
2004 Gomez JE, McKinney JD. M. tuberculosis persistence, latency, and drug tolerance. Tuberculosis (Edinburgh, Scotland). 84: 29-44. PMID 14670344 DOI: 10.1016/J.Tube.2003.08.003  0.599
2003 McKinney JD, Gomez JE. Life on the inside for Mycobacterium tuberculosis. Nature Medicine. 9: 1356-7. PMID 14595429 DOI: 10.1038/Nm1103-1356  0.561
2000 Gomez JE, Bishai WR. whmD is an essential mycobacterial gene required for proper septation and cell division Proceedings of the National Academy of Sciences of the United States of America. 97: 8554-8559. PMID 10880571 DOI: 10.1073/Pnas.140225297  0.431
1997 Gomez JE, Chen JM, Bishai WR. Sigma factors of mycobacterium tuberculosis Tubercle and Lung Disease. 78: 175-183. PMID 9713650 DOI: 10.1016/S0962-8479(97)90024-1  0.47
1995 Howard NS, Gomez JE, Ko C, Bishai WR. Color selection with a hygromycin-resistance-based Escherichia coli-mycobacterial shuttle vector Gene. 166: 181-182. PMID 8529888 DOI: 10.1016/0378-1119(95)00597-X  0.498
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