James T. Staley - Publications

Affiliations: 
University of Washington, Seattle, Seattle, WA 
Area:
Microbiology Biology, Oceanography Biology, Environmental Sciences

81 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Staley JT. Domain Cell Theory supports the independent evolution of the Eukarya, Bacteria and Archaea and the Nuclear Compartment Commonality hypothesis. Open Biology. 7. PMID 28659382 DOI: 10.1098/Rsob.170041  0.303
2015 Hedlund BP, Dodsworth JA, Staley JT. The changing landscape of microbial biodiversity exploration and its implications for systematics. Systematic and Applied Microbiology. 38: 231-236. PMID 25921438 DOI: 10.1016/J.Syapm.2015.03.003  0.588
2015 Brenner DJ, Staley JT, Krieg NR. Classification of Procaryotic Organisms and the Concept of Bacterial Speciation Bergey's Manual of Systematics of Archaea and Bacteria. 27-31. DOI: 10.1007/978-0-387-21609-6_4  0.35
2015 Staley JT, Whitman WB. Fusobacteriales ord. nov Bergey's Manual of Systematics of Archaea and Bacteria. 1-1. DOI: 10.1002/9781118960608.Obm00063  0.33
2015 Staley JT, Whitman WB. Fusobacteriaceae fam. nov. Bergey's Manual of Systematics of Archaea and Bacteria. 1-1. DOI: 10.1002/9781118960608.Fbm00154  0.324
2014 Zuo G, Hao B, Staley JT. Geographic divergence of "Sulfolobus islandicus" strains assessed by genomic analyses including electronic DNA hybridization confirms they are geovars. Antonie Van Leeuwenhoek. 105: 431-5. PMID 24301254 DOI: 10.1007/S10482-013-0081-4  0.419
2012 Kirkpatrick JB, Fuchsman CA, Yakushev E, Staley JT, Murray JW. Concurrent activity of anammox and denitrifying bacteria in the Black Sea. Frontiers in Microbiology. 3: 256. PMID 22833740 DOI: 10.3389/Fmicb.2012.00256  0.323
2012 Fuchsman CA, Murray JW, Staley JT. Stimulation of autotrophic denitrification by intrusions of the bosporus plume into the anoxic black sea. Frontiers in Microbiology. 3: 257. PMID 22826706 DOI: 10.3389/Fmicb.2012.00257  0.31
2012 Fuchsman CA, Staley JT, Oakley BB, Kirkpatrick JB, Murray JW. Free-living and aggregate-associated Planctomycetes in the Black Sea. Fems Microbiology Ecology. 80: 402-16. PMID 22251018 DOI: 10.1111/J.1574-6941.2012.01306.X  0.333
2011 Fuchsman CA, Kirkpatrick JB, Brazelton WJ, Murray JW, Staley JT. Metabolic strategies of free-living and aggregate-associated bacterial communities inferred from biologic and chemical profiles in the Black Sea suboxic zone. Fems Microbiology Ecology. 78: 586-603. PMID 22066565 DOI: 10.1111/J.1574-6941.2011.01189.X  0.373
2011 Staley JT. Capturing and taming Earth’s wild microbes Microbiology Australia. 32: 71. DOI: 10.1071/Ma11071  0.384
2010 Staley JT, Fitzgerald K, Fuerst JA, Dijkshoorn L. Microbiological material exchanges among scientists. Research in Microbiology. 161: 446-52. PMID 20558279 DOI: 10.1016/J.Resmic.2010.05.011  0.349
2010 Yee B, Oertli GE, Fuerst JA, Staley JT. Reclassification of the polyphyletic genus Prosthecomicrobium to form two novel genera, Vasilyevaea gen. nov. and Bauldia gen. nov. with four new combinations: Vasilyevaea enhydra comb. nov., Vasilyevaea mishustinii comb. nov., Bauldia consociata comb. nov. and Bauldia litoralis comb. nov. International Journal of Systematic and Evolutionary Microbiology. 60: 2960-6. PMID 20118292 DOI: 10.1099/Ijs.0.018234-0  0.342
2010 Auman AJ, Breezee JL, Gosink JJ, Schumann P, Barnes CR, Kämpfer P, Staley JT. Psychromonas boydii sp. nov., a gas-vacuolate, psychrophilic bacterium isolated from an Arctic sea-ice core. International Journal of Systematic and Evolutionary Microbiology. 60: 84-92. PMID 19648341 DOI: 10.1099/Ijs.0.007773-0  0.366
2010 Staley JT. Biogeochemistry: microbial geochemistry. Science (New York, N.Y.). 225: 1141-2. PMID 17782416 DOI: 10.1126/Science.225.4667.1141  0.328
2010 Staley J, Chun J, Rainey F, Goodfellow M, Kämpfer P, Whitman W, De Vos P. Bergey's Organizes New Society Microbe Magazine. 5: 93-93. DOI: 10.1128/Microbe.5.93.2  0.303
2009 Staley JT. Universal species concept: pipe dream or a step toward unifying biology? Journal of Industrial Microbiology & Biotechnology. 36: 1331-6. PMID 19779746 DOI: 10.1007/S10295-009-0642-8  0.349
2009 Lee KC, Webb RI, Janssen PH, Sangwan P, Romeo T, Staley JT, Fuerst JA. Phylum Verrucomicrobia representatives share a compartmentalized cell plan with members of bacterial phylum Planctomycetes. Bmc Microbiology. 9: 5. PMID 19133117 DOI: 10.1186/1471-2180-9-5  0.376
2009 Xin G, Zhang G, Kang JW, Staley JT, Doty SL. A diazotrophic, indole-3-acetic acid-producing endophyte from wild cottonwood Biology and Fertility of Soils. 45: 669-674. DOI: 10.1007/S00374-009-0377-8  0.345
2009 Doty SL, Oakley B, Xin G, Kang JW, Singleton G, Khan Z, Vajzovic A, Staley JT. Diazotrophic endophytes of native black cottonwood and willow Symbiosis. 47: 23-33. DOI: 10.1007/Bf03179967  0.378
2007 Yee B, Lafi FF, Oakley B, Staley JT, Fuerst JA. A canonical FtsZ protein in Verrucomicrobium spinosum, a member of the Bacterial phylum Verrucomicrobia that also includes tubulin-producing Prosthecobacter species. Bmc Evolutionary Biology. 7: 37. PMID 17349062 DOI: 10.1186/1471-2148-7-37  0.348
2007 Oakley BB, Francis CA, Roberts KJ, Fuchsman CA, Srinivasan S, Staley JT. Analysis of nitrite reductase (nirK and nirS) genes and cultivation reveal depauperate community of denitrifying bacteria in the Black Sea suboxic zone. Environmental Microbiology. 9: 118-30. PMID 17227417 DOI: 10.1111/J.1462-2920.2006.01121.X  0.38
2007 Perry RS, Mcloughlin N, Lynne BY, Sephton MA, Oliver JD, Perry CC, Campbell K, Engel MH, Farmer JD, Brasier MD, Staley JT. Defining biominerals and organominerals: Direct and indirect indicators of life Sedimentary Geology. 201: 157-179. DOI: 10.1016/J.Sedgeo.2007.05.014  0.589
2006 Staley JT. The bacterial species dilemma and the genomic-phylogenetic species concept. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 361: 1899-909. PMID 17062409 DOI: 10.1098/Rstb.2006.1914  0.389
2006 Auman AJ, Breezee JL, Gosink JJ, Kämpfer P, Staley JT. Psychromonas ingrahamii sp. nov., a novel gas vacuolate, psychrophilic bacterium isolated from Arctic polar sea ice. International Journal of Systematic and Evolutionary Microbiology. 56: 1001-7. PMID 16627645 DOI: 10.1099/Ijs.0.64068-0  0.392
2006 Kirkpatrick J, Oakley B, Fuchsman C, Srinivasan S, Staley JT, Murray JW. Diversity and distribution of Planctomycetes and related bacteria in the suboxic zone of the Black Sea. Applied and Environmental Microbiology. 72: 3079-83. PMID 16598025 DOI: 10.1128/Aem.72.4.3079-3083.2006  0.358
2006 Hedlund BP, Staley JT. Isolation and characterization of Pseudoalteromonas strains with divergent polycyclic aromatic hydrocarbon catabolic properties. Environmental Microbiology. 8: 178-82. PMID 16343332 DOI: 10.1111/J.1462-2920.2005.00871.X  0.638
2006 Perry RS, Lynne BY, Sephton MA, Kolb VM, Perry CC, Staley JT. Baking black opal in the desert sun: The importance of silica in desert varnish Geology. 34: 537-540. DOI: 10.1130/G22352.1  0.582
2006 Spratt BG, Staley JT, Fisher MC. Introduction: Species and speciation in micro-organisms Philosophical Transactions of the Royal Society B: Biological Sciences. 361: 1897-1898. DOI: 10.1098/Rstb.2006.1929  0.303
2005 Staley JT, Bouzek H, Jenkins C. Eukaryotic signature proteins of Prosthecobacter dejongeii and Gemmata sp. Wa-1 as revealed by in silico analysis. Fems Microbiology Letters. 243: 9-14. PMID 15667994 DOI: 10.1016/J.Femsle.2004.11.034  0.328
2005 Perry RS, Kolb VM, Lynne BY, Sephton M, McLoughlin N, Engel MH, Olendzenski L, Brasier M, Staley JT. How desert varnish forms? Proceedings of Spie - the International Society For Optical Engineering. 5906: 1-12. DOI: 10.1117/12.626547  0.566
2004 Oakley B, North M, Franklin JF, Hedlund BP, Staley JT. Diversity and distribution of Frankia strains symbiotic with Ceanothus in California. Applied and Environmental Microbiology. 70: 6444-52. PMID 15528504 DOI: 10.1128/Aem.70.11.6444-6452.2004  0.583
2004 Gu AZ, Hedlund BP, Staley JT, Strand SE, Stensel HD. Analysis and comparison of the microbial community structures of two enrichment cultures capable of reductively dechlorinating TCE and cis-DCE. Environmental Microbiology. 6: 45-54. PMID 14686940 DOI: 10.1046/J.1462-2920.2003.00525.X  0.747
2004 Perry RS, Dodsworth J, Staley JT, Engel MH. Bacterial diversity in desert varnish European Space Agency, (Special Publication) Esa Sp. 259-260.  0.579
2004 Perry RS, Gorbushina A, Engel MH, Kolb VM, Krumbein WE, Staley JT. Accumulation and deposition of inorganic and organic compounds by microcolonial fungi European Space Agency, (Special Publication) Esa Sp. 55-58.  0.532
2003 Perry RS, Engel MH, Botta O, Staley JT. Amino acid analyses of desert varnish from the Sonoran and Mojave Deserts Geomicrobiology Journal. 20: 427-438. DOI: 10.1080/713851132  0.567
2002 Jenkins C, Samudrala R, Anderson I, Hedlund BP, Petroni G, Michailova N, Pinel N, Overbeek R, Rosati G, Staley JT. Genes for the cytoskeletal protein tubulin in the bacterial genus Prosthecobacter. Proceedings of the National Academy of Sciences of the United States of America. 99: 17049-54. PMID 12486237 DOI: 10.1073/Pnas.012516899  0.598
2002 Hedlund BP, Staley JT. Phylogeny of the genus Simonsiella and other members of the Neisseriaceae. International Journal of Systematic and Evolutionary Microbiology. 52: 1377-82. PMID 12148653 DOI: 10.1099/00207713-52-4-1377  0.634
2001 Hedlund BP, Geiselbrecht AD, Staley JT. Marinobacter strain NCE312 has a Pseudomonas-like naphthalene dioxygenase. Fems Microbiology Letters. 201: 47-51. PMID 11445166 DOI: 10.1111/J.1574-6968.2001.Tb10731.X  0.622
2001 Hedlund BP, Staley JT. Vibrio cyclotrophicus sp. nov., a polycyclic aromatic hydrocarbon (PAH)-degrading marine bacterium. International Journal of Systematic and Evolutionary Microbiology. 51: 61-6. PMID 11211274 DOI: 10.1099/00207713-51-1-61  0.611
2000 Ward NL, Rainey FA, Hedlund BP, Staley JT, Ludwig W, Stackebrandt E. Comparative phylogenetic analyses of members of the order Planctomycetales and the division Verrucomicrobia: 23S rRNA gene sequence analysis supports the 16S rRNA gene sequence-derived phylogeny. International Journal of Systematic and Evolutionary Microbiology. 50: 1965-72. PMID 11155969 DOI: 10.1099/00207713-50-6-1965  0.623
2000 Rockne KJ, Chee-Sanford JC, Sanford RA, Hedlund BP, Staley JT, Strand SE. Anaerobic naphthalene degradation by microbial pure cultures under nitrate-reducing conditions. Applied and Environmental Microbiology. 66: 1595-601. PMID 10742247 DOI: 10.1128/Aem.66.4.1595-1601.2000  0.723
1999 Staley JT, Gosink JJ. Poles apart: Biodiversity and biogeography of sea ice bacteria Annual Review of Microbiology. 53: 189-215. PMID 10547690 DOI: 10.1146/Annurev.Micro.53.1.189  0.345
1999 Hedlund BP, Geiselbrecht AD, Bair TJ, Staley JT. Polycyclic aromatic hydrocarbon degradation by a new marine bacterium, Neptunomonas naphthovorans gen. nov., sp. nov. Applied and Environmental Microbiology. 65: 251-9. PMID 9872786 DOI: 10.1128/Aem.65.1.251-259.1999  0.621
1998 Geiselbrecht AD, Hedlund BP, Tichi MA, Staley JT. Isolation of marine polycyclic aromatic hydrocarbon (PAH)-degrading Cycloclasticus strains from the Gulf of Mexico and comparison of their PAH degradation ability with that of puget sound Cycloclasticus strains. Applied and Environmental Microbiology. 64: 4703-10. PMID 9835552 DOI: 10.1128/Aem.64.12.4703-4710.1998  0.631
1998 Junge K, Gosink JJ, Hoppe HG, Staley JT. Arthrobacter, Brachybacterium and Planococcus isolates identified from Antarctic Sea ice brine. Description of Planococcus mcmeekinii, sp. nov Systematic and Applied Microbiology. 21: 306-314. PMID 9704115 DOI: 10.1016/S0723-2020(98)80038-6  0.329
1998 Gosink JJ, Woese CR, Staley JT. Polaribacter gen. nov., with three new species, P. irgensii sp. nov., P. franzmannii sp. nov. and P. filamentus sp. nov., gas vacuolate polar marine bacteria of the Cytophaga-Flavobacterium-Bacteroides group and reclassification of 'Flectobacillus glomeratus' as Polaribacter glomeratus comb. nov. International Journal of Systematic Bacteriology. 48: 223-35. PMID 9542092 DOI: 10.1099/00207713-48-1-223  0.402
1998 Bowman JP, Gosink JJ, McCammon SA, Lewis TE, Nichols DS, Nichols PD, Skerratt JH, Staley JT, McMeekin TA. Colwellia demingiae sp. nov., Colwellia hornerae sp. nov., Colwellia rossensis sp. nov. and Colwellia psychrotropica sp. nov.: Psychrophilic Antarctic species with the ability to synthesize docosahexaenoic acid (22:6ω3) International Journal of Systematic Bacteriology. 48: 1171-1180.  0.312
1997 Hedlund BP, Gosink JJ, Staley JT. Verrucomicrobia div. nov., a new division of the bacteria containing three new species of Prosthecobacter. Antonie Van Leeuwenhoek. 72: 29-38. PMID 9296261 DOI: 10.1023/A:1000348616863  0.597
1997 Gosink JJ, Herwig RP, Staley JT. Octadecabacter arcticus gen, nov., sp. nov., and O. antarcticus, sp. nov., nonpigmented, psychrophilic gas vacuolate bacteria from polar sea ice and water Systematic and Applied Microbiology. 20: 356-365. DOI: 10.1016/S0723-2020(97)80003-3  0.374
1996 Hedlund BP, Gosink JJ, Staley JT. Phylogeny of Prosthecobacter, the fusiform caulobacters: members of a recently discovered division of the bacteria. International Journal of Systematic Bacteriology. 46: 960-6. PMID 8863424 DOI: 10.1099/00207713-46-4-960  0.644
1996 Irgens RL, Gosink JJ, Staley JT. Polaromonas vacuolata gen. nov., sp. nov., a psychrophilic, marine, gas vacuolate bacterium from Antarctica International Journal of Systematic Bacteriology. 46: 822-826. PMID 8782696 DOI: 10.1099/00207713-46-3-822  0.403
1996 Eppard M, Krumbein WE, Koch C, Rhiel E, Staley JT, Stackebrandt E. Morphological, physiological, and molecular characterization of actinomycetes isolated from dry soil, rocks, and monument surfaces Archives of Microbiology. 166: 12-22. PMID 8661940 DOI: 10.1007/S002030050350  0.401
1995 Dyksterhouse SE, Gray JP, Herwig RP, Lara JC, Staley JT. Cycloclasticus pugetii gen. nov., sp. nov., an Aromatic hydrocarbon- degrading bacterium from marine sediments International Journal of Systematic Bacteriology. 45: 116-123. PMID 7857792  0.355
1994 Stoecker MA, Herwig RP, Staley JT. Rhodococcus zopfii sp. nov., a toxicant-degrading bacterium International Journal of Systematic Bacteriology. 44: 106-110. PMID 8123552 DOI: 10.1099/00207713-44-1-106  0.411
1992 Staley JT, Orians GH. 3 - Evolution and the Biosphere International Geophysics. 50: 21-54. DOI: 10.1016/S0074-6142(08)62686-8  0.305
1992 Semenov A, Staley JT. Ecology of Polyprosthecate Bacteria Advances in Microbial Ecology. 12: 339-382. DOI: 10.1007/978-1-4684-7609-5_7  0.304
1991 Irgens RL, Kersters K, Segers P, Gillis M, Staley JT. Aquabacter spiritensis, gen. nov., sp. nov. an aerobic, gas-vacuolate aquatic bacterium Archives of Microbiology. 155: 137-142. DOI: 10.1007/Bf00248607  0.409
1989 Irgens RL, Suzuki I, Staley JT. Gas vacuolate bacteria obtained from marine waters of Antarctica Current Microbiology. 18: 261-265. DOI: 10.1007/Bf01570303  0.406
1988 Herwig RP, Pellerin NB, Irgens RL, Maki JS, Staley JT. Chitinolytic bacteria and chitin mineralization in the marine waters and sediments along the Antartic Peninsula Fems Microbiology Letters. 53: 101-111. DOI: 10.1111/J.1574-6968.1988.Tb02653.X  0.336
1987 Staley JT, Irgens RL, Brenner DJ. Enhydrobacter aerosaccus gen. nov., sp. nov., a Gas-Vacuolated, Facultatively Anaerobic, Heterotrophic Rod International Journal of Systematic Bacteriology. 37: 289-291. DOI: 10.1099/00207713-37-3-289  0.33
1986 Herwig RP, Staley JT. Anaerobic bacteria from the digestive tract of North Atlantic fin whales (Balaenoptera physalus) Fems Microbiology Letters. 38: 361-371. DOI: 10.1111/J.1574-6968.1986.Tb01749.X  0.36
1986 Palmer FE, Staley JT, Murray RGE, Counsell T, Adams JB. Identification of manganese‐oxidizing bacteria from desert varnish Geomicrobiology Journal. 4: 343-360. DOI: 10.1080/01490458609385943  0.363
1986 Staley JT, Stanley PM. Potential commercial applications in aquatic microbiology Microbial Ecology. 12: 79-100. DOI: 10.1007/Bf02153224  0.36
1984 Staley JT. Prosthecomicrobium hirschii, a new species in a redefined genus International Journal of Systematic Bacteriology. 34: 304-308. DOI: 10.1099/00207713-34-3-304  0.349
1983 BAULD J, BIGFORD R, STALEY JT. Prosthecomicrobium litoralum, a New Species from Marine Habitats International Journal of Systematic Bacteriology. 33: 613-617. DOI: 10.1099/00207713-33-3-613  0.402
1983 Taylor-George S, Palmer F, Staley JT, Borns DJ, Curtiss B, Adams JB. Fungi and bacteria involved in desert varnish formation Microbial Ecology. 9: 227-245. DOI: 10.1007/Bf02097739  0.314
1982 Gregory E, Staley JT. Widespread distribution of ablity to oxidize manganese among freshwater bacteria Applied and Environmental Microbiology. 44: 509-511. DOI: 10.1128/Aem.44.2.509-511.1982  0.327
1982 Staley JT, Lehmicke LG, Palmer FE. Impact of Mount St. Helens eruption on bacteriology of lakes in the blast zone Applied and Environmental Microbiology. 43: 664-670. DOI: 10.1128/Aem.43.3.664-670.1982  0.384
1980 Gregory E, Perry RS, Staley JT. Characterization, distribution, and significance ofMetallogenium in Lake Washington. Microbial Ecology. 6: 125-40. PMID 24226963 DOI: 10.1007/Bf02010551  0.599
1980 Bauld J, Staley JT. Planctomyces maris sp. nov., nom. rev International Journal of Systematic Bacteriology. 30: 657. DOI: 10.1099/00207713-30-4-657  0.387
1980 Staley JT, Marshall KC, Skerman VBD. Budding and prosthecate bacteria from freshwater habitats of various trophic states Microbial Ecology. 5: 245-251. DOI: 10.1007/Bf02020332  0.344
1980 Staley JT. The gas vacuole: An early organelle of prokaryote motility? Origins of Life. 10: 111-116. DOI: 10.1007/Bf00928662  0.329
1979 Stanley PM, Ordal EJ, Staley JT. High numbers of prosthecate bacteria in pulp mill waste aeration lagoons. Applied and Environmental Microbiology. 37: 1007-11. PMID 16345371 DOI: 10.1128/Aem.37.5.1007-1011.1979  0.354
1978 Moore RL, Schmidt J, Poindexter J, Staley JT. Deoxyribonucleic acid homology among the Caulobacters International Journal of Systematic Bacteriology. 28: 349-353. DOI: 10.1099/00207713-28-3-349  0.349
1976 Staley JT, de Bont JAM, de Jonge K. Prosthecobacter fusiformis nov. gen. et sp., the fusiform caulobacter Antonie Van Leeuwenhoek. 42: 333-342. PMID 1086646 DOI: 10.1007/Bf00394132  0.352
1976 Stanley PM, Moore RL, Staley JT. Characterization of two new isoltates of mushroom shaped budding bacteria International Journal of Systematic Bacteriology. 26: 522-527. DOI: 10.1099/00207713-26-4-522  0.424
1976 Konopka AE, Moore RL, Staley JT. Taxonomy of Microcyclus and other nonmotile, ring forming bacteria International Journal of Systematic Bacteriology. 26: 505-510. DOI: 10.1099/00207713-26-4-505  0.387
1975 Jordan TL, Staley JT. Electron microscopic study of succession in the periphyton community of lake Washington Microbial Ecology. 2: 241-251. DOI: 10.1007/Bf02011645  0.302
1971 Staley JT. Incidence of prosthecate bacteria in a polluted stream Applied Microbiology. 22: 496-502. PMID 4943266 DOI: 10.1128/Aem.22.4.496-502.1971  0.336
1970 de Bont JAM, Staley JT, Pankratz HS. Isolation and description of a non-motile, fusiform, stalked bacterium, a representatieve of a new genus Antonie Van Leeuwenhoek. 36: 397-407. PMID 4922260 DOI: 10.1007/BF02069040  0.31
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