Thierry Boon - Related publications

de Duve Institute 
Immunology, Cancer
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Seefeldt AC, Aguirre Rivera J, Johansson M. Direct Measurements of Erythromycin's Effect on Protein Synthesis Kinetics in Living Bacterial Cells. Journal of Molecular Biology. 433: 166942. PMID 33744313 DOI: 10.1016/j.jmb.2021.166942   
2021 Paris Z. Nuclear tRNA export in trypanosomes: a journey full of twists and turns guided by tRNA modifications. Parasitology. 1-4. PMID 33729118 DOI: 10.1017/S0031182021000482   
2021 Pereira M, Ribeiro DR, Pinheiro MM, Ferreira M, Kellner S, Soares AR. mU54 tRNA Hypomodification by Lack of TRMT2A Drives the Generation of tRNA-Derived Small RNAs. International Journal of Molecular Sciences. 22. PMID 33799331 DOI: 10.3390/ijms22062941   
2021 Aron ZD, Mehrani A, Hoffer ED, Connolly KL, Srinivas P, Torhan MC, Alumasa JN, Cabrera M, Hosangadi D, Barbor JS, Cardinale SC, Kwasny SM, Morin LR, Butler MM, Opperman TJ, et al. trans-Translation inhibitors bind to a novel site on the ribosome and clear Neisseria gonorrhoeae in vivo. Nature Communications. 12: 1799. PMID 33741965 DOI: 10.1038/s41467-021-22012-7   
2021 Pochopien AA, Beckert B, Kasvandik S, Berninghausen O, Beckmann R, Tenson T, Wilson DN. Structure of Gcn1 bound to stalled and colliding 80S ribosomes. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33790014 DOI: 10.1073/pnas.2022756118   
2021 Michalska K, Jedrzejczak R, Wower J, Chang C, Baragaña B, Gilbert IH, Forte B, Joachimiak A. Mycobacterium tuberculosis Phe-tRNA synthetase: structural insights into tRNA recognition and aminoacylation. Nucleic Acids Research. PMID 33885823 DOI: 10.1093/nar/gkab272   
2021 Müller C, Crowe-McAuliffe C, Wilson DN. Ribosome Rescue Pathways in Bacteria. Frontiers in Microbiology. 12: 652980. PMID 33815344 DOI: 10.3389/fmicb.2021.652980   
2021 Aquino GRR, Krogh N, Hackert P, Martin R, Gallesio JD, van Nues RW, Schneider C, Watkins NJ, Nielsen H, Bohnsack KE, Bohnsack MT. RNA helicase-mediated regulation of snoRNP dynamics on pre-ribosomes and rRNA 2'-O-methylation. Nucleic Acids Research. PMID 33721027 DOI: 10.1093/nar/gkab159   
2021 Li J, Zhu WY, Yang WQ, Li CT, Liu RJ. The occurrence order and cross-talk of different tRNA modifications. Science China. Life Sciences. PMID 33881742 DOI: 10.1007/s11427-020-1906-4   
2021 Li HM, Tan X, Zhang S, Yao J, Li HG. Transfer- or "transmission"- RNA fragments? The roles of tsRNAs in the reproductive system. Molecular Human Reproduction. PMID 33837423 DOI: 10.1093/molehr/gaab026   
2021 Kim C, Holm M, Mandava CS, Sanyal S. Optimization of a fluorescent-mRNA based real-time assay for precise kinetic measurements of ribosomal translocation. Rna Biology. 1-12. PMID 33938388 DOI: 10.1080/15476286.2021.1913312   
2021 Acton RJ, Yuan W, Gao F, Xia Y, Bourne E, Wozniak E, Bell J, Lillycrop K, Wang J, Dennison E, Harvey NC, Mein CA, Spector TD, Hysi PG, Cooper C, et al. The genomic loci of specific human tRNA genes exhibit ageing-related DNA hypermethylation. Nature Communications. 12: 2655. PMID 33976121 DOI: 10.1038/s41467-021-22639-6   
2021 Wang X, Yue Z, Xu F, Wang S, Hu X, Dai J, Zhao G. Coevolution of ribosomal RNA expansion segment 7L and assembly factor Noc2p specializes the ribosome biogenesis pathway between Saccharomyces cerevisiae and Candida albicans. Nucleic Acids Research. PMID 33823547 DOI: 10.1093/nar/gkab218   
2021 Nakamura A, Wang D, Komatsu Y. Analysis of GTP addition in the reverse (3'-5') direction by human tRNA guanylyltransferase. Rna (New York, N.Y.). PMID 33758037 DOI: 10.1261/rna.078287.120   
2021 Aggarwal SD, Lloyd AJ, Yerneni SS, Narciso AR, Shepherd J, Roper DI, Dowson CG, Filipe SR, Hiller NL. A molecular link between cell wall biosynthesis, translation fidelity, and stringent response in . Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33785594 DOI: 10.1073/pnas.2018089118   
2021 Tian T, Li S, Lang P, Zhao D, Zeng J. Full-length ribosome density prediction by a multi-input and multi-output model. Plos Computational Biology. 17: e1008842. PMID 33770074 DOI: 10.1371/journal.pcbi.1008842   
2021 Plassart L, Shayan R, Montellese C, Rinaldi D, Larburu N, Pichereaux C, Froment C, Lebaron S, O'Donohue MF, Kutay U, Marcoux J, Gleizes PE, Plisson-Chastang C. The final step of 40S ribosomal subunit maturation is controlled by a dual key lock. Elife. 10. PMID 33908345 DOI: 10.7554/eLife.61254   
2021 Fries SJ, Braun TS, Globisch C, Peter C, Drescher M, Deuerling E. Deciphering molecular details of the RAC-ribosome interaction by EPR spectroscopy. Scientific Reports. 11: 8681. PMID 33883604 DOI: 10.1038/s41598-021-87847-y   
2021 De Tarafder A, Parajuli NP, Majumdar S, Kaçar B, Sanyal S. Kinetic Analysis Suggests Evolution of Ribosome Specificity in Modern Elongation Factor-Tus from 'Generalist' Ancestors. Molecular Biology and Evolution. PMID 33871630 DOI: 10.1093/molbev/msab114   
2021 González García JS, Delgado J. Stochastic microswimming model of ribosome motion on the polysome. The European Physical Journal. E, Soft Matter. 44: 9. PMID 33683520 DOI: 10.1140/epje/s10189-021-00011-2   
2021 Ipsaro JJ, O'Brien PA, Bhattacharya S, Palmer AG, Joshua-Tor L. Asterix/Gtsf1 links tRNAs and piRNA silencing of retrotransposons. Cell Reports. 34: 108914. PMID 33789107 DOI: 10.1016/j.celrep.2021.108914   
2021 Akbar S, Bhakta S, Sengupta J. Structural insights into the interplay of protein biogenesis factors with the 70S ribosome. Structure (London, England : 1993). PMID 33761323 DOI: 10.1016/j.str.2021.03.005   
2021 Pan J, Liu P, Pajk F, Dumont HJ, Han BP. The mitochondrial genome of Sars, 1885 (Crustacea: Branchiopoda: Cladocera) from Hainan Island, China. Mitochondrial Dna. Part B, Resources. 6: 1279-1280. PMID 33829108 DOI: 10.1080/23802359.2021.1907252   
2021 Suzuki T. The expanding world of tRNA modifications and their disease relevance. Nature Reviews. Molecular Cell Biology. PMID 33658722 DOI: 10.1038/s41580-021-00342-0   
2021 Tharp JM, Vargas-Rodriguez O, Schepartz A, Söll D. Genetic Encoding of Three Distinct Noncanonical Amino Acids Using Reprogrammed Initiator and Nonsense Codons. Acs Chemical Biology. PMID 33723984 DOI: 10.1021/acschembio.1c00120   
2021 Roovers M, Droogmans L, Grosjean H. Post-Transcriptional Modifications of Conserved Nucleotides in the T-Loop of tRNA: A Tale of Functional Convergent Evolution. Genes. 12. PMID 33499018 DOI: 10.3390/genes12020140   
2021 Saha A, Nandi N. Role of the transfer ribonucleic acid (tRNA) bound magnesium ions in the charging step of aminoacylation reaction in the glutamyl tRNA synthetase and the seryl tRNA synthetase bound with cognate tRNA. Journal of Biomolecular Structure & Dynamics. 1-22. PMID 33896406 DOI: 10.1080/07391102.2021.1914732   
2021 Carter CW, Wills PR. The Roots of Genetic Coding in Aminoacyl-tRNA Synthetase Duality. Annual Review of Biochemistry. PMID 33781075 DOI: 10.1146/annurev-biochem-071620-021218   
2021 Huang J, Chen W, Zhou F, Pang Z, Wang L, Pan T, Wang X. Tissue-specific reprogramming of host tRNA transcriptome by the microbiome. Genome Research. PMID 33858843 DOI: 10.1101/gr.272153.120   
2021 Wiener D, Schwartz S. How many tRNAs are out there? Molecular Cell. 81: 1595-1597. PMID 33861948 DOI: 10.1016/j.molcel.2021.03.021   
2021 Wang YJ, Gilbert WV. Quantitative Comparisons of Translation Activity by Ribosome Profiling with Internal Standards. Methods in Molecular Biology (Clifton, N.J.). 2252: 127-149. PMID 33765273 DOI: 10.1007/978-1-0716-1150-0_5   
2021 Deparis Q, Duitama J, Foulquié-Moreno MR, Thevelein JM. Whole-Genome Transformation Promotes tRNA Anticodon Suppressor Mutations under Stress. Mbio. 12. PMID 33758086 DOI: 10.1128/mBio.03649-20   
2021 Shao D, Ahmed N, Soni N, O'Brien EP. RiboA: a web application to identify ribosome A-site locations in ribosome profiling data. Bmc Bioinformatics. 22: 156. PMID 33765913 DOI: 10.1186/s12859-021-04068-w   
2021 Rapino F, Zhou Z, Roncero Sanchez AM, Joiret M, Seca C, El Hachem N, Valenti G, Latini S, Shostak K, Geris L, Li P, Huang G, Mazzucchelli G, Baiwir D, Desmet CJ, et al. Wobble tRNA modification and hydrophilic amino acid patterns dictate protein fate. Nature Communications. 12: 2170. PMID 33859181 DOI: 10.1038/s41467-021-22254-5   
2021 Mangkalaphiban K, He F, Ganesan R, Wu C, Baker R, Jacobson A. Transcriptome-wide investigation of stop codon readthrough in Saccharomyces cerevisiae. Plos Genetics. 17: e1009538. PMID 33878104 DOI: 10.1371/journal.pgen.1009538   
2021 Choi E, Han Y, Park S, Koo H, Lee JS, Lee EJ. A Translation-Aborting Small Open Reading Frame in the Intergenic Region Promotes Translation of a Mg Transporter in Typhimurium. Mbio. 12. PMID 33849981 DOI: 10.1128/mBio.03376-20   
2021 Guimarães AR, Correia I, Sousa I, Oliveira C, Moura G, Bezerra AR, Santos MAS. tRNAs as a Driving Force of Genome Evolution in Yeast. Frontiers in Microbiology. 12: 634004. PMID 33776966 DOI: 10.3389/fmicb.2021.634004   
2021 Qiu J, Qian SB. Poly-A Tailing and Adaptor Ligation Methods for Ribo-Seq Library Construction. Methods in Molecular Biology (Clifton, N.J.). 2252: 221-237. PMID 33765278 DOI: 10.1007/978-1-0716-1150-0_10   
2021 Vorontsov IE, Egorov AA, Anisimova AS, Eliseeva IA, Makeev VJ, Gladyshev VN, Dmitriev SE, Kulakovskiy IV. Assessing Ribosome Distribution Along Transcripts with Polarity Scores and Regression Slope Estimates. Methods in Molecular Biology (Clifton, N.J.). 2252: 269-294. PMID 33765281 DOI: 10.1007/978-1-0716-1150-0_13   
2021 Alkan F, Silva J, Barberà EP, Faller WJ. Ribo-ODDR: Oligo design pipeline for experiment-specific rRNA depletion in ribo-seq. Bioinformatics (Oxford, England). PMID 33720291 DOI: 10.1093/bioinformatics/btab171   
2021 Kim YJ, Kwak JS, Dae Hwan K, Song JT, Seo HS. Mutation of the gene affects heading date in rice. Plant Signaling & Behavior. 1913366. PMID 33896383 DOI: 10.1080/15592324.2021.1913366   
2021 Jarrous N, Mani D, Ramanathan A. Coordination of transcription and processing of tRNA. The Febs Journal. PMID 33929081 DOI: 10.1111/febs.15904   
2021 Chu D, Wei L. Context-dependent and -independent selection on synonymous mutations revealed by 1,135 genomes of Arabidopsis thaliana. Bmc Ecology and Evolution. 21: 68. PMID 33910528 DOI: 10.1186/s12862-021-01792-y   
2021 Harnett D, Meerdink E, Calviello L, Sydow D, Ohler U. Genome-Wide Analysis of Actively Translated Open Reading Frames Using RiboTaper/ORFquant. Methods in Molecular Biology (Clifton, N.J.). 2252: 331-346. PMID 33765284 DOI: 10.1007/978-1-0716-1150-0_16   
2021 Thrun A, Garzia A, Kigoshi-Tansho Y, Patil PR, Umbaugh CS, Dallinger T, Liu J, Kreger S, Patrizi A, Cox GA, Tuschl T, Joazeiro CAP. Convergence of mammalian RQC and C-end rule proteolytic pathways via alanine tailing. Molecular Cell. PMID 33909987 DOI: 10.1016/j.molcel.2021.03.004   
2021 Tang X, Lyu B, Lu H, Tang J, Meng R, Cai B. The mitochondrial genome of a parasitic wasp, Yang (Hymenoptera: Chalcidoidea: Eulophidae) and phylogenetic analysis. Mitochondrial Dna. Part B, Resources. 6: 872-874. PMID 33796663 DOI: 10.1080/23802359.2021.1886008   
2021 Wu S, Hei Z, Zheng L, Zhou J, Liu Z, Wang J, Fang P. Structural analyses of a human lysyl-tRNA synthetase mutant associated with autosomal recessive nonsyndromic hearing impairment. Biochemical and Biophysical Research Communications. 554: 83-88. PMID 33784510 DOI: 10.1016/j.bbrc.2021.03.093   
2021 Seo Y, Chae J, Ki JS. Complete mitochondrial genome of the hydrozoan jellyfish Mayer, 1910 (Cnidaria; Hydrozoa; Leptothecata) with phylogenetic analysis. Mitochondrial Dna. Part B, Resources. 6: 1202-1203. PMID 33796784 DOI: 10.1080/23802359.2021.1903363   
2021 Vinogradova ES, Nikonov OS, Nikonova EY. Associations between Neurological Diseases and Mutations in the Human Glycyl-tRNA Synthetase. Biochemistry. Biokhimiia. 86: S12-S23. PMID 33827397 DOI: 10.1134/S0006297921140029   
2021 Dong Z, Li J, He J, Liu G, Mao C, Zhao R, Li X. The mitochondrial genome of a leaf insect (Phasmatodea: Phylliidae) in Southeast Asia. Mitochondrial Dna. Part B, Resources. 6: 888-890. PMID 33796669 DOI: 10.1080/23802359.2021.1886014