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Barbara Panning - Publications

Affiliations: 
University of California, San Francisco, San Francisco, CA 
Area:
X chromosome inactivation
Website:
http://tetrad.ucsf.edu/faculty.php?ID=142

60 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Goodrich L, Panning B, Leung KN. Activators and Repressors: A balancing act for X-inactivation. Seminars in Cell & Developmental Biology. PMID 27223409 DOI: 10.1016/j.semcdb.2016.05.005  1
2016 Myers SA, Peddada S, Chatterjee N, Freidreich T, Tomoda K, Krings G, Thomas S, Broeker M, Maynard J, Thomson M, Pollard K, Yamanaka S, Burlingame AL, Panning B. SOX2 O-GlcNAcylation alters its protein-protein interactions and genomic occupancy to modulate gene expression in pluripotent cells. Elife. 5. PMID 26949256 DOI: 10.7554/eLife.10647  1
2015 Panning B, Segal E. Editorial overview: Genome architecture and expression. Current Opinion in Genetics & Development. 31: v-vi. PMID 26051228 DOI: 10.1016/j.gde.2015.05.003  1
2014 Smith EA, McDermott G, Do M, Leung K, Panning B, Le Gros MA, Larabell CA. Quantitatively imaging chromosomes by correlated cryo-fluorescence and soft x-ray tomographies. Biophysical Journal. 107: 1988-96. PMID 25418180 DOI: 10.1016/j.bpj.2014.09.011  1
2014 Gilbert LA, Horlbeck MA, Adamson B, Villalta JE, Chen Y, Whitehead EH, Guimaraes C, Panning B, Ploegh HL, Bassik MC, Qi LS, Kampmann M, Weissman JS. Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation. Cell. 159: 647-61. PMID 25307932 DOI: 10.1016/j.cell.2014.09.029  1
2014 Leung KN, Panning B. X-inactivation: Xist RNA uses chromosome contacts to coat the X. Current Biology : Cb. 24: R80-2. PMID 24456982 DOI: 10.1016/j.cub.2013.11.052  1
2013 Miri K, Latham K, Panning B, Zhong Z, Andersen A, Varmuza S. The imprinted polycomb group gene Sfmbt2 is required for trophoblast maintenance and placenta development. Development (Cambridge, England). 140: 4480-9. PMID 24154523 DOI: 10.1242/dev.096511  1
2013 Roguev A, Talbot D, Negri GL, Shales M, Cagney G, Bandyopadhyay S, Panning B, Krogan NJ. Quantitative genetic-interaction mapping in mammalian cells. Nature Methods. 10: 432-7. PMID 23407553 DOI: 10.1038/nmeth.2398  1
2012 Tomoda K, Takahashi K, Leung K, Okada A, Narita M, Yamada NA, Eilertson KE, Tsang P, Baba S, White MP, Sami S, Srivastava D, Conklin BR, Panning B, Yamanaka S. Derivation conditions impact X-inactivation status in female human induced pluripotent stem cells. Cell Stem Cell. 11: 91-9. PMID 22770243 DOI: 10.1016/j.stem.2012.05.019  1
2011 Myers SA, Panning B, Burlingame AL. Polycomb repressive complex 2 is necessary for the normal site-specific O-GlcNAc distribution in mouse embryonic stem cells. Proceedings of the National Academy of Sciences of the United States of America. 108: 9490-5. PMID 21606357 DOI: 10.1073/pnas.1019289108  1
2010 Fazzio TG, Panning B. Control of embryonic stem cell identity by nucleosome remodeling enzymes. Current Opinion in Genetics & Development. 20: 500-4. PMID 20800472 DOI: 10.1016/j.gde.2010.08.001  1
2010 Royce-Tolland ME, Andersen AA, Koyfman HR, Talbot DJ, Wutz A, Tonks ID, Kay GF, Panning B. The A-repeat links ASF/SF2-dependent Xist RNA processing with random choice during X inactivation. Nature Structural & Molecular Biology. 17: 948-54. PMID 20657585 DOI: 10.1038/nsmb.1877  1
2010 Fazzio TG, Panning B. Condensin complexes regulate mitotic progression and interphase chromatin structure in embryonic stem cells. The Journal of Cell Biology. 188: 491-503. PMID 20176923 DOI: 10.1083/jcb.200908026  1
2010 Eliuk SM, Maltby D, Panning B, Burlingame AL. High resolution electron transfer dissociation studies of unfractionated intact histones from murine embryonic stem cells using on-line capillary LC separation: determination of abundant histone isoforms and post-translational modifications. Molecular & Cellular Proteomics : McP. 9: 824-37. PMID 20133344 DOI: 10.1074/mcp.M900569-MCP200  1
2010 Panning B. Fine-tuning silencing. Cell Stem Cell. 6: 3-4. PMID 20085734 DOI: 10.1016/j.stem.2009.12.013  1
2009 Worringer KA, Chu F, Panning B. The zinc finger protein Zn72D and DEAD box helicase Belle interact and control maleless mRNA and protein levels. Bmc Molecular Biology. 10: 33. PMID 19386123 DOI: 10.1186/1471-2199-10-33  1
2008 Panning B. X-chromosome inactivation: the molecular basis of silencing. Journal of Biology. 7: 30. PMID 18983701 DOI: 10.1186/jbiol95  1
2008 Fazzio TG, Huff JT, Panning B. Chromatin regulation Tip(60)s the balance in embryonic stem cell self-renewal. Cell Cycle (Georgetown, Tex.). 7: 3302-6. PMID 18948739  1
2008 Madhani HD, Francis NJ, Kingston RE, Kornberg RD, Moazed D, Narlikar GJ, Panning B, Struhl K. Epigenomics: a roadmap, but to where? Science (New York, N.Y.). 322: 43-4. PMID 18832628 DOI: 10.1126/science.322.5898.43b  1
2008 Panning B, Taatjes DJ. Transcriptional regulation: it takes a village. Molecular Cell. 31: 622-9. PMID 18775322 DOI: 10.1016/j.molcel.2008.08.013  1
2008 Nicodemi M, Panning B, Prisco A. The colocalization transition of homologous chromosomes at meiosis. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 77: 061913. PMID 18643306 DOI: 10.1103/PhysRevE.77.061913  1
2008 Fazzio TG, Huff JT, Panning B. An RNAi screen of chromatin proteins identifies Tip60-p400 as a regulator of embryonic stem cell identity. Cell. 134: 162-74. PMID 18614019 DOI: 10.1016/j.cell.2008.05.031  1
2008 Nicodemi M, Panning B, Prisco A. A thermodynamic switch for chromosome colocalization. Genetics. 179: 717-21. PMID 18493085 DOI: 10.1534/genetics.107.083154  1
2008 Royce-Tolland M, Panning B. X-inactivation: it takes two to count. Current Biology : Cb. 18: R255-6. PMID 18364230 DOI: 10.1016/j.cub.2008.01.039  1
2007 Alexander MK, Mlynarczyk-Evans S, Royce-Tolland M, Plocik A, Kalantry S, Magnuson T, Panning B. Differences between homologous alleles of olfactory receptor genes require the Polycomb Group protein Eed. The Journal of Cell Biology. 179: 269-76. PMID 17954609 DOI: 10.1083/jcb.200706053  1
2007 Worringer KA, Panning B. Zinc finger protein Zn72D promotes productive splicing of the maleless transcript. Molecular and Cellular Biology. 27: 8760-9. PMID 17923683 DOI: 10.1128/MCB.01415-07  1
2007 Nusinow DA, Sharp JA, Morris A, Salas S, Plath K, Panning B. The histone domain of macroH2A1 contains several dispersed elements that are each sufficient to direct enrichment on the inactive X chromosome. Journal of Molecular Biology. 371: 11-8. PMID 17570398 DOI: 10.1016/j.jmb.2007.05.063  1
2007 de la Cruz CC, Kirmizis A, Simon MD, Isono K, Koseki H, Panning B. The polycomb group protein SUZ12 regulates histone H3 lysine 9 methylation and HP1 alpha distribution. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 15: 299-314. PMID 17406994 DOI: 10.1007/s10577-007-1126-1  1
2007 Simon MD, Chu F, Racki LR, de la Cruz CC, Burlingame AL, Panning B, Narlikar GJ, Shokat KM. The site-specific installation of methyl-lysine analogs into recombinant histones. Cell. 128: 1003-12. PMID 17350582 DOI: 10.1016/j.cell.2006.12.041  0.32
2007 Xiao C, Sharp JA, Kawahara M, Davalos AR, Difilippantonio MJ, Hu Y, Li W, Cao L, Buetow K, Ried T, Chadwick BP, Deng CX, Panning B. The XIST noncoding RNA functions independently of BRCA1 in X inactivation. Cell. 128: 977-89. PMID 17350580 DOI: 10.1016/j.cell.2007.01.034  1
2007 Cohen HR, Panning B. XIST RNA exhibits nuclear retention and exhibits reduced association with the export factor TAP/NXF1. Chromosoma. 116: 373-83. PMID 17333237 DOI: 10.1007/s00412-007-0100-1  1
2007 Nusinow DA, Hernández-Muñoz I, Fazzio TG, Shah GM, Kraus WL, Panning B. Poly(ADP-ribose) polymerase 1 is inhibited by a histone H2A variant, MacroH2A, and contributes to silencing of the inactive X chromosome. The Journal of Biological Chemistry. 282: 12851-9. PMID 17322296 DOI: 10.1074/jbc.M610502200  1
2006 Mlynarczyk-Evans S, Royce-Tolland M, Alexander MK, Andersen AA, Kalantry S, Gribnau J, Panning B. X chromosomes alternate between two states prior to random X-inactivation. Plos Biology. 4: e159. PMID 16669701 DOI: 10.1371/journal.pbio.0040159  1
2006 Kalantry S, Mills KC, Yee D, Otte AP, Panning B, Magnuson T. The Polycomb group protein Eed protects the inactive X-chromosome from differentiation-induced reactivation. Nature Cell Biology. 8: 195-202. PMID 16415857 DOI: 10.1038/ncb1351  1
2006 Chu F, Nusinow DA, Chalkley RJ, Plath K, Panning B, Burlingame AL. Mapping post-translational modifications of the histone variant MacroH2A1 using tandem mass spectrometry. Molecular & Cellular Proteomics : McP. 5: 194-203. PMID 16210244 DOI: 10.1074/mcp.M500285-MCP200  1
2005 Lucchesi JC, Kelly WG, Panning B. Chromatin remodeling in dosage compensation. Annual Review of Genetics. 39: 615-51. PMID 16285873 DOI: 10.1146/annurev.genet.39.073003.094210  1
2005 Alexander MK, Panning B. Counting chromosomes: not as easy as 1, 2, 3. Current Biology : Cb. 15: R834-6. PMID 16243022 DOI: 10.1016/j.cub.2005.10.002  1
2005 de la Cruz CC, Fang J, Plath K, Worringer KA, Nusinow DA, Zhang Y, Panning B. Developmental regulation of Suz 12 localization. Chromosoma. 114: 183-92. PMID 15986205 DOI: 10.1007/s00412-005-0008-6  1
2005 Hernández-Muñoz I, Lund AH, van der Stoop P, Boutsma E, Muijrers I, Verhoeven E, Nusinow DA, Panning B, Marahrens Y, van Lohuizen M. Stable X chromosome inactivation involves the PRC1 Polycomb complex and requires histone MACROH2A1 and the CULLIN3/SPOP ubiquitin E3 ligase. Proceedings of the National Academy of Sciences of the United States of America. 102: 7635-40. PMID 15897469 DOI: 10.1073/pnas.0408918102  1
2005 Cohen HR, Royce-Tolland ME, Worringer KA, Panning B. Chromatin modifications on the inactive X chromosome. Progress in Molecular and Subcellular Biology. 38: 91-122. PMID 15881892  1
2005 Nusinow DA, Panning B. Recognition and modification of seX chromosomes. Current Opinion in Genetics & Development. 15: 206-13. PMID 15797204 DOI: 10.1016/j.gde.2005.02.002  1
2004 Plath K, Talbot D, Hamer KM, Otte AP, Yang TP, Jaenisch R, Panning B. Developmentally regulated alterations in Polycomb repressive complex 1 proteins on the inactive X chromosome. The Journal of Cell Biology. 167: 1025-35. PMID 15596546 DOI: 10.1083/jcb.200409026  1
2004 Panning B. X inactivation in mouse ES cells: histone modifications and FISH. Methods in Enzymology. 376: 419-28. PMID 14975322 DOI: 10.1016/S0076-6879(03)76028-5  1
2003 Andersen AA, Panning B. Epigenetic gene regulation by noncoding RNAs. Current Opinion in Cell Biology. 15: 281-9. PMID 12787769 DOI: 10.1016/S0955-0674(03)00041-3  1
2003 Plath K, Fang J, Mlynarczyk-Evans SK, Cao R, Worringer KA, Wang H, de la Cruz CC, Otte AP, Panning B, Zhang Y. Role of histone H3 lysine 27 methylation in X inactivation. Science (New York, N.Y.). 300: 131-5. PMID 12649488 DOI: 10.1126/science.1084274  1
2002 Plath K, Mlynarczyk-Evans S, Nusinow DA, Panning B. Xist RNA and the mechanism of X chromosome inactivation. Annual Review of Genetics. 36: 233-78. PMID 12429693 DOI: 10.1146/annurev.genet.36.042902.092433  1
2001 Hong B, Reeves P, Panning B, Swanson MS, Yang TP. Identification of an autoimmune serum containing antibodies against the Barr body. Proceedings of the National Academy of Sciences of the United States of America. 98: 8703-8. PMID 11438711 DOI: 10.1073/pnas.151259598  1
2000 Mlynarczyk SK, Panning B. X inactivation: Tsix and Xist as yin and yang. Current Biology : Cb. 10: R899-903. PMID 11137025 DOI: 10.1016/S0960-9822(00)00847-2  1
1999 Rasmussen TP, Huang T, Mastrangelo MA, Loring J, Panning B, Jaenisch R. Messenger RNAs encoding mouse histone macroH2A1 isoforms are expressed at similar levels in male and female cells and result from alternative splicing. Nucleic Acids Research. 27: 3685-9. PMID 10471737 DOI: 10.1093/nar/27.18.3685  1
1999 Csankovszki G, Panning B, Bates B, Pehrson JR, Jaenisch R. Conditional deletion of Xist disrupts histone macroH2A localization but not maintenance of X inactivation. Nature Genetics. 22: 323-4. PMID 10431231 DOI: 10.1038/11887  1
1998 Jaenisch R, Beard C, Lee J, Marahrens Y, Panning B. Mammalian X chromosome inactivation. Novartis Foundation Symposium. 214: 200-9; discussion 20. PMID 9601019  1
1998 Panning B, Jaenisch R. RNA and the epigenetic regulation of X chromosome inactivation. Cell. 93: 305-8. PMID 9590161 DOI: 10.1016/S0092-8674(00)81155-1  1
1997 Panning B, Dausman J, Jaenisch R. X chromosome inactivation is mediated by Xist RNA stabilization. Cell. 90: 907-16. PMID 9298902 DOI: 10.1016/S0092-8674(00)80355-4  1
1997 Cheung P, Panning B, Smiley JR. Herpes simplex virus immediate-early proteins ICP0 and ICP4 activate the endogenous human alpha-globin gene in nonerythroid cells. Journal of Virology. 71: 1784-93. PMID 9032307  1
1997 Marahrens Y, Panning B, Dausman J, Strauss W, Jaenisch R. Xist-deficient mice are defective in dosage compensation but not spermatogenesis. Genes & Development. 11: 156-66. PMID 9009199  1
1996 Panning B, Jaenisch R. DNA hypomethylation can activate Xist expression and silence X-linked genes. Genes & Development. 10: 1991-2002. PMID 8769643  1
1995 Panning B, Smiley JR. Activation of expression of multiple subfamilies of human Alu elements by adenovirus type 5 and herpes simplex virus type 1. Journal of Molecular Biology. 248: 513-24. PMID 7752221 DOI: 10.1006/jmbi.1995.0239  1
1994 Panning B, Smiley JR. Activation of RNA polymerase III transcription of human Alu elements by herpes simplex virus. Virology. 202: 408-17. PMID 8009851 DOI: 10.1006/viro.1994.1357  1
1993 Panning B, Smiley JR. Activation of RNA polymerase III transcription of human Alu repetitive elements by adenovirus type 5: requirement for the E1b 58-kilodalton protein and the products of E4 open reading frames 3 and 6. Molecular and Cellular Biology. 13: 3231-44. PMID 7684492  1
1989 Panning B, Smiley JR. Regulation of cellular genes transduced by herpes simplex virus. Journal of Virology. 63: 1929-37. PMID 2539495  1
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