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Yihong Ye - Publications

ERAD, secretory protein quality control

104 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zhang Q, Chen CZ, Swaroop M, Xu M, Wang L, Lee J, Pradhan M, Shen M, Luo Z, Xu Y, Huang W, Zheng W, Ye Y. Targeting heparan sulfate proteoglycan-assisted endocytosis as a COVID-19 therapeutic option. Biorxiv : the Preprint Server For Biology. PMID 32699847 DOI: 10.1101/2020.07.14.202549  0.64
2020 Zhang Q, Xu Y, Lee J, Jarnik M, Wu X, Bonifacino JS, Shen J, Ye Y. A myosin-7B-dependent endocytosis pathway mediates cellular entry of α-synuclein fibrils and polycation-bearing cargos. Proceedings of the National Academy of Sciences of the United States of America. PMID 32366666 DOI: 10.1073/pnas.1918617117  0.64
2019 Wang L, Xu Y, Rogers H, Saidi L, Noguchi CT, Li H, Yewdell JW, Guydosh NR, Ye Y. UFMylation of RPL26 links translocation-associated quality control to endoplasmic reticulum protein homeostasis. Cell Research. PMID 31595041 DOI: 10.1038/s41422-019-0236-6  0.64
2019 Ding R, Zhang T, Wilson DJ, Xie J, Williams J, Xu Y, Ye Y, Chen L. Discovery of Irreversible p97 Inhibitors. Journal of Medicinal Chemistry. PMID 30830772 DOI: 10.1021/acs.jmedchem.9b00144  0.64
2018 Xu Y, Cui L, Dibello A, Wang L, Lee J, Saidi L, Lee JG, Ye Y. DNAJC5 facilitates USP19-dependent unconventional secretion of misfolded cytosolic proteins. Cell Discovery. 4: 11. PMID 29531792 DOI: 10.1038/s41421-018-0012-7  0.64
2018 Lee SY, Choi YS, Kim EH, Cheong HK, Lee YJ, Lee JG, Ye Y, Ryu KS. Non-enzymatic acetylation of ubiquitin Lys side-chains is modulated by their neighboring residues. The Febs Journal. PMID 29430834 DOI: 10.1111/febs.14404  0.36
2017 Mock JY, Xu Y, Ye Y, Clemons WM. Structural basis for regulation of the nucleo-cytoplasmic distribution of Bag6 by TRC35. Proceedings of the National Academy of Sciences of the United States of America. PMID 29042515 DOI: 10.1073/pnas.1702940114  0.64
2017 Wang X, Chemmama IE, Yu C, Huszagh A, Xu Y, Viner R, Block SA, Cimermancic P, Rychnovsky SD, Ye Y, Sali A, Huang L. The Proteasome-Interacting Ecm29 Protein Disassembles the 26S Proteasome in Response to Oxidative Stress. The Journal of Biological Chemistry. PMID 28821611 DOI: 10.1074/jbc.M117.803619  0.64
2017 Liu C, Liu W, Ye Y, Li W. Ufd2p synthesizes branched ubiquitin chains to promote the degradation of substrates modified with atypical chains. Nature Communications. 8: 14274. PMID 28165462 DOI: 10.1038/ncomms14274  0.92
2016 Xu Y, Anderson DE, Ye Y. The HECT domain ubiquitin ligase HUWE1 targets unassembled soluble proteins for degradation. Cell Discovery. 2: 16040. PMID 27867533 DOI: 10.1038/celldisc.2016.40  0.64
2016 Zhang T, Ye Y. Ever HRD a ubiquitin-gated channel? Cell Research. PMID 27491350 DOI: 10.1038/cr.2016.92  1
2016 Zhao Y, Zhang T, Huo H, Ye Y, Liu Y. Lunapark Is a Component of a Ubiquitin Ligase Complex Localized to the Endoplasmic Reticulum Three-way Junctions. The Journal of Biological Chemistry. PMID 27387505 DOI: 10.1074/jbc.M116.737783  1
2016 Lee JG, Takahama S, Zhang G, Tomarev SI, Ye Y. Unconventional secretion of misfolded proteins promotes adaptation to proteasome dysfunction in mammalian cells. Nature Cell Biology. PMID 27295555 DOI: 10.1038/ncb3372  0.36
2016 Waheed AA, MacDonald S, Khan M, Mounts M, Swiderski M, Xu Y, Ye Y, Freed EO. The Vpu-interacting Protein SGTA Regulates Expression of a Non-glycosylated Tetherin Species. Scientific Reports. 6: 24934. PMID 27103333 DOI: 10.1038/srep24934  1
2016 Zhang T, Ye Y. Doa1 is a MAD adaptor for Cdc48. The Journal of Cell Biology. PMID 27044894 DOI: 10.1083/jcb.201603078  1
2016 Xia D, Tang WK, Ye Y. Structure and function of the AAA+ ATPASE p97/Cdc48p. Gene. PMID 26945625 DOI: 10.1016/j.gene.2016.02.042  1
2016 Chen M, Ye Y, Zou B, Guo S, Zhou F, Lu K, Liu J, Xu Z, Han H, Liu Z, Li Y, Yao K, Liu C, Qin Z. C14orf166 is a high-risk biomarker for bladder cancer and promotes bladder cancer cell proliferation. Journal of Translational Medicine. 14: 55. PMID 26905879 DOI: 10.1186/s12967-016-0801-4  0.44
2016 Liu C, Ye Y, Zhou Q, Zhang R, Zhang H, Liu W, Xu C, Liu L, Huang S, Chen L. Crosstalk between Ca2+ signaling and mitochondrial H2O2 is required for rotenone inhibition of mTOR signaling pathway leading to neuronal apoptosis. Oncotarget. PMID 26859572 DOI: 10.18632/oncotarget.7183  0.44
2016 Dai M, Feng M, Ye Y, Wu X, Liu D, Liao M, Cao W. Exogenous avian leukosis virus-induced activation of the ERK/AP1 pathway is required for virus replication and correlates with virus-induced tumorigenesis. Scientific Reports. 6: 19226. PMID 26754177 DOI: 10.1038/srep19226  0.6
2016 Ye Y, Yao N, Wang Q. A method of ranking interval numbers based on degrees for multiple attribute decision making Journal of Intelligent and Fuzzy Systems. 30: 211-221. DOI: 10.3233/IFS-151747  0.32
2016 Liu S, Deng B, Zhong Y, Ran B, Yong Z, Sun W, Yang D, Jiang L, Ye Y. Unique geological features of burial and superimposition of the Lower Paleozoic shale gas across the Sichuan Basin and its periphery Earth Science Frontiers. 23: 11-28. DOI: 10.13745/j.esf.2016.01.002  0.32
2016 Li X, Jiang X, Liu Y, Lang Y, Ye Y, Lin L, Liu J, Zhang Y. Efficacy of dexmedetomidine with cognitive behavioral therapy for treating chronic insomnia related to conditioned arousal: A randomized controlled trial Sleep and Biological Rhythms. 14: 75-85. DOI: 10.1007/s41105-015-0025-7  0.36
2016 Liu L, Ye Y, Yao Z, Zhang L, Li Z, Wang L, Ma X, Chen QH, Zhang Z, Xiang S. A Hierarchically Porous Metal-Organic Framework from Semirigid Ligand for Gas Adsorption Chinese Journal of Chemistry. 34: 215-219. DOI: 10.1002/cjoc.201500617  0.36
2015 Sun C, Lu L, Yu Y, Liu L, Hu Y, Ye Y, Jin C, Lin X. Decreasing methylation of pectin caused by nitric oxide leads to higher aluminium binding in cell walls and greater aluminium sensitivity of wheat roots. Journal of Experimental Botany. PMID 26663393 DOI: 10.1093/jxb/erv514  0.36
2015 Xia D, Ye Y. In Search of a Cure for Proteostasis-Addicted Cancer: A AAA Target Revealed. Cancer Cell. 28: 550-2. PMID 26555170 DOI: 10.1016/j.ccell.2015.10.006  1
2015 Ye Y, Zhang T, Li W, Sun H, Lu D, Wu B, Zhang X. Glucose-Based Mesoporous Carbon Nanospheres as Functional Carriers for Oral Delivery of Amphiphobic Raloxifene: Insights into the Bioavailability Enhancement and Lymphatic Transport. Pharmaceutical Research. PMID 26553355 DOI: 10.1007/s11095-015-1827-7  0.92
2015 Wu F, Ye Y, Chen R, Qian J, Zhao T, Li L, Li W. Systematic Effect for an Ultralong Cycle Lithium-Sulfur Battery. Nano Letters. PMID 26502268 DOI: 10.1021/acs.nanolett.5b02864  0.92
2015 Li W, Zhang T, Ye Y, Zhang X, Wu B. Enhanced bioavailability of tripterine through lipid nanoparticles using broccoli-derived lipids as a carrier material. International Journal of Pharmaceutics. PMID 26453780 DOI: 10.1016/j.ijpharm.2015.10.011  0.92
2015 Zhang T, Xu Y, Liu Y, Ye Y. gp78 functions downstream of Hrd1 to promote degradation of misfolded proteins of the endoplasmic reticulum. Molecular Biology of the Cell. PMID 26424800 DOI: 10.1091/mbc.E15-06-0354  1
2015 Ye Y, Minami A, Mandi A, Liu C, Taniguchi T, Kuzuyama T, Monde K, Gomi K, Oikawa H. Genome Mining for Sesterterpenes Using Bifunctional Terpene Synthases Reveals a Unified Intermediate of Di/Sesterterpenes. Journal of the American Chemical Society. 137: 11846-53. PMID 26332841 DOI: 10.1021/jacs.5b08319  0.44
2015 Xu Y, Zhang S, Niu H, Ye Y, Hu F, Chen S, Li X, Luo X, Jiang S, Liu Y, Chen Y, Li J, Xiang R, Li N. STIM1 accelerates cell senescence in a remodeled microenvironment but enhances the epithelial-to-mesenchymal transition in prostate cancer. Scientific Reports. 5: 11754. PMID 26257076 DOI: 10.1038/srep11754  0.64
2015 Ye Y, Ding F, Li M, Yang X, Pang H, Wang Q, Xu D, Kang L, Zeng X, Zhang S. Interarm Blood Pressure Difference in Patients With Systemic Lupus Erythematosus. Journal of Clinical Rheumatology : Practical Reports On Rheumatic & Musculoskeletal Diseases. 21: 251-5. PMID 26203829 DOI: 10.1097/RHU.0000000000000271  0.32
2015 Yuan J, Liu T, Zhang X, Si Y, Ye Y, Zhao C, Wang Q, Shen X. Intensive Versus Conventional Glycemic Control in Patients with Diabetes During Enteral Nutrition After Gastrectomy. Journal of Gastrointestinal Surgery : Official Journal of the Society For Surgery of the Alimentary Tract. 19: 1553-8. PMID 26084869 DOI: 10.1007/s11605-015-2871-7  0.32
2015 Wei W, Yang H, Liu Y, Ye Y, Li J. In vitro synergy of colistin combinations against extensively drug-resistant Acinetobacter baumannii producing OXA-23 carbapenemase. Journal of Chemotherapy (Florence, Italy). 1973947815Y000000003. PMID 25978105 DOI: 10.1179/1973947815Y.0000000030  0.36
2015 Wang H, Ye Y, Zhu Z, Mo L, Lin C, Wang Q, Wang H, Gong X, He X, Lu G, Lu F, Zhang S. MiR-124 Regulates Apoptosis and Autophagy Process in MPTP Model of Parkinson's Disease by Targeting to Bim. Brain Pathology (Zurich, Switzerland). PMID 25976060 DOI: 10.1111/bpa.12267  0.32
2015 Ye YJ, Liu Y, Cai M, He D, Shen JS, Ju YQ, Bian XM, Pan HT, Zhang QX. Screening of molecular markers linked to dwarf trait in crape myrtle by bulked segregant analysis. Genetics and Molecular Research : Gmr. 14: 4369-80. PMID 25966210 DOI: 10.4238/2015.April.30.10  0.36
2015 Li X, Zhang J, Bao Y, Ye Y, Li W, Yin W, Guo F, Chen A. WITHDRAWN: Efficacy and safety of short-term treatment of naproxcinod in patients with osteoarthritis (OA) of the hip: A prospective, randomized study. Archives of Gerontology and Geriatrics. PMID 25912890 DOI: 10.1016/j.archger.2015.01.012  0.92
2015 Yang H, Hu L, Liu Y, Ye Y, Li J. Detection of the plasmid-mediated quinolone resistance determinants in clinical isolates of Acinetobacter baumannii in China. Journal of Chemotherapy (Florence, Italy). 1973947815Y000000001. PMID 25895829 DOI: 10.1179/1973947815Y.0000000017  0.36
2015 Zheng Y, Jia R, Qian Y, Ye Y, Liu C. Correlation between electric potential and peristaltic behavior in Physarum polycephalum. Bio Systems. 132: 13-9. PMID 25892288 DOI: 10.1016/j.biosystems.2015.04.005  0.44
2015 Ding F, Ye Y, Li M, Wang Q, Xu D, Zeng X, Zhang S. [Incidence and associated risk factors of arterial stiffness in patients with systemic lupus erythematosus]. Zhonghua Xin Xue Guan Bing Za Zhi. 43: 56-61. PMID 25876724  0.32
2015 Qin J, Xiang H, Ye Y, Ni L. A simulated annealing methodology to multiproduct capacitated facility location with stochastic demand. Thescientificworldjournal. 2015: 826363. PMID 25834839 DOI: 10.1155/2015/826363  0.32
2015 Ye Y, Song X, Liu L, Shi SQ, Garfield RE, Zhang G, Liu H. Effects of Patient-Controlled Epidural Analgesia on Uterine Electromyography During Spontaneous Onset of Labor in Term Nulliparous Women. Reproductive Sciences (Thousand Oaks, Calif.). PMID 25824008 DOI: 10.1177/1933719115578926  0.36
2015 Hu J, Ye Y, Kong M, Hong S, Cheng L, Wang Q, Qin J, Zou L, Jiang L. Daily prednisone treatment in duchenne muscular dystrophy in southwest china. Muscle & Nerve. PMID 25809413 DOI: 10.1002/mus.24665  0.32
2015 Mock JY, Chartron JW, Zaslaver M, Xu Y, Ye Y, Clemons WM. Bag6 complex contains a minimal tail-anchor-targeting module and a mock BAG domain. Proceedings of the National Academy of Sciences of the United States of America. 112: 106-11. PMID 25535373 DOI: 10.1073/pnas.1402745112  1
2015 Chen S, Liu C, Xu B, Ye Y. Design of generic adaptive optics wave-front real-time processor Zhongguo Jiguang/Chinese Journal of Lasers. 42. DOI: 10.3788/CJL201542.1212001  0.44
2015 Chen S, Liu W, Dong L, Wang S, Yang P, Xu B, Ye Y. Constraint study on deformable mirror in close-loop adaptive optics system Guangxue Xuebao/Acta Optica Sinica. 35. DOI: 10.3788/AOS201535.1201002  0.44
2014 Zhang T, Ye Y. The final moments of misfolded proteins en route to the proteasome. Dna and Cell Biology. 33: 477-83. PMID 24833120 DOI: 10.1089/dna.2014.2452  1
2014 Christianson JC, Ye Y. Cleaning up in the endoplasmic reticulum: ubiquitin in charge. Nature Structural & Molecular Biology. 21: 325-35. PMID 24699081 DOI: 10.1038/nsmb.2793  1
2014 Yan L, Liu W, Zhang H, Liu C, Shang Y, Ye Y, Zhang X, Li W. Ube2g2-gp78-mediated HERP polyubiquitylation is involved in ER stress recovery. Journal of Cell Science. 127: 1417-27. PMID 24496447 DOI: 10.1242/jcs.135293  1
2014 Liu Y, Soetandyo N, Lee JG, Liu L, Xu Y, Clemons WM, Ye Y. USP13 antagonizes gp78 to maintain functionality of a chaperone in ER-associated degradation. Elife. 3: e01369. PMID 24424410 DOI: 10.7554/eLife.01369  0.36
2014 Liu W, Shang Y, Zeng Y, Liu C, Li Y, Zhai L, Wang P, Lou J, Xu P, Ye Y, Li W. Dimeric Ube2g2 simultaneously engages donor and acceptor ubiquitins to form Lys48-linked ubiquitin chains. The Embo Journal. 33: 46-61. PMID 24366945 DOI: 10.1002/embj.201385315  1
2014 Huang CH, Chu YR, Ye Y, Chen X. Role of HERP and a HERP-related protein in HRD1-dependent protein degradation at the endoplasmic reticulum. The Journal of Biological Chemistry. 289: 4444-54. PMID 24366871 DOI: 10.1074/jbc.M113.519561  1
2014 Lee JG, Kim W, Gygi S, Ye Y. Characterization of the deubiquitinating activity of USP19 and its role in endoplasmic reticulum-associated degradation. The Journal of Biological Chemistry. 289: 3510-7. PMID 24356957 DOI: 10.1074/jbc.M113.538934  1
2014 Liu Y, Soetandyo N, Lee JG, Liu L, Xu Y, Clemons WM, Ye Y. USP13 antagonizes gp78 to maintain functionality of a chaperone in ER-associated degradation Elife. 2014. DOI: 10.7554/eLife.01369.001  1
2013 Huang CH, Hsiao HT, Chu YR, Ye Y, Chen X. Derlin2 protein facilitates HRD1-mediated retro-translocation of sonic hedgehog at the endoplasmic reticulum. The Journal of Biological Chemistry. 288: 25330-9. PMID 23867461 DOI: 10.1074/jbc.M113.455212  1
2013 Ramanathan HN, Zhang G, Ye Y. Monoubiquitination of EEA1 regulates endosome fusion and trafficking. Cell & Bioscience. 3: 24. PMID 23701900 DOI: 10.1186/2045-3701-3-24  1
2013 Xu Y, Liu Y, Lee JG, Ye Y. A ubiquitin-like domain recruits an oligomeric chaperone to a retrotranslocation complex in endoplasmic reticulum-associated degradation. The Journal of Biological Chemistry. 288: 18068-76. PMID 23665563 DOI: 10.1074/jbc.M112.449199  1
2013 Lee JG, Baek K, Soetandyo N, Ye Y. Reversible inactivation of deubiquitinases by reactive oxygen species in vitro and in cells. Nature Communications. 4: 1568. PMID 23463011 DOI: 10.1038/ncomms2532  1
2013 Lee JG, Ye Y. Bag6/Bat3/Scythe: a novel chaperone activity with diverse regulatory functions in protein biogenesis and degradation. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 35: 377-85. PMID 23417671 DOI: 10.1002/bies.201200159  1
2012 Xu Y, Cai M, Yang Y, Huang L, Ye Y. SGTA recognizes a noncanonical ubiquitin-like domain in the Bag6-Ubl4A-Trc35 complex to promote endoplasmic reticulum-associated degradation. Cell Reports. 2: 1633-44. PMID 23246001 DOI: 10.1016/j.celrep.2012.11.010  1
2012 Liu Y, Ye Y. Roles of p97-associated deubiquitinases in protein quality control at the endoplasmic reticulum. Current Protein & Peptide Science. 13: 436-46. PMID 22812527 DOI: 10.2174/138920312802430608  1
2012 Ramanathan HN, Ye Y. Cellular strategies for making monoubiquitin signals. Critical Reviews in Biochemistry and Molecular Biology. 47: 17-28. PMID 21981143 DOI: 10.3109/10409238.2011.620943  1
2012 Ramanathan HN, Ye Y. The p97 ATPase associates with EEA1 to regulate the size of early endosomes. Cell Research. 22: 346-59. PMID 21556036 DOI: 10.1038/cr.2011.80  1
2011 Ramanathan HN, Ye Y. Revoking the cellular license to replicate: yet another AAA assignment. Molecular Cell. 44: 3-4. PMID 21981912 DOI: 10.1016/j.molcel.2011.09.006  1
2011 Zhong Y, Wang Y, Yang H, Ballar P, Lee JG, Ye Y, Monteiro MJ, Fang S. Importin beta interacts with the endoplasmic reticulum-associated degradation machinery and promotes ubiquitination and degradation of mutant alpha1-antitrypsin. The Journal of Biological Chemistry. 286: 33921-30. PMID 21832065 DOI: 10.1074/jbc.M111.272906  0.36
2011 Nery FC, Armata IA, Farley JE, Cho JA, Yaqub U, Chen P, da Hora CC, Wang Q, Tagaya M, Klein C, Tannous B, Caldwell KA, Caldwell GA, Lencer WI, Ye Y, et al. TorsinA participates in endoplasmic reticulum-associated degradation. Nature Communications. 2: 393. PMID 21750546 DOI: 10.1038/ncomms1383  1
2011 Weniger MA, Rizzatti EG, Pérez-Galán P, Liu D, Wang Q, Munson PJ, Raghavachari N, White T, Tweito MM, Dunleavy K, Ye Y, Wilson WH, Wiestner A. Treatment-induced oxidative stress and cellular antioxidant capacity determine response to bortezomib in mantle cell lymphoma. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 17: 5101-12. PMID 21712452 DOI: 10.1158/1078-0432.CCR-10-3367  1
2011 Hübener J, Vauti F, Funke C, Wolburg H, Ye Y, Schmidt T, Wolburg-Buchholz K, Schmitt I, Gardyan A, Driessen S, Arnold HH, Nguyen HP, Riess O. N-terminal ataxin-3 causes neurological symptoms with inclusions, endoplasmic reticulum stress and ribosomal dislocation. Brain : a Journal of Neurology. 134: 1925-42. PMID 21653538 DOI: 10.1093/brain/awr118  1
2011 Wang Q, Liu Y, Soetandyo N, Baek K, Hegde R, Ye Y. A ubiquitin ligase-associated chaperone holdase maintains polypeptides in soluble states for proteasome degradation. Molecular Cell. 42: 758-70. PMID 21636303 DOI: 10.1016/j.molcel.2011.05.010  1
2011 Liu Y, Ye Y. Proteostasis regulation at the endoplasmic reticulum: a new perturbation site for targeted cancer therapy. Cell Research. 21: 867-83. PMID 21537343 DOI: 10.1038/cr.2011.75  1
2010 Wang Q, Shinkre BA, Lee JG, Weniger MA, Liu Y, Chen W, Wiestner A, Trenkle WC, Ye Y. The ERAD inhibitor Eeyarestatin I is a bifunctional compound with a membrane-binding domain and a p97/VCP inhibitory group. Plos One. 5: e15479. PMID 21124757 DOI: 10.1371/journal.pone.0015479  1
2010 Soetandyo N, Ye Y. The p97 ATPase dislocates MHC class I heavy chain in US2-expressing cells via a Ufd1-Npl4-independent mechanism. The Journal of Biological Chemistry. 285: 32352-9. PMID 20702414 DOI: 10.1074/jbc.M110.131649  1
2010 Magadán JG, Pérez-Victoria FJ, Sougrat R, Ye Y, Strebel K, Bonifacino JS. Multilayered mechanism of CD4 downregulation by HIV-1 Vpu involving distinct ER retention and ERAD targeting steps. Plos Pathogens. 6: e1000869. PMID 20442859 DOI: 10.1371/journal.ppat.1000869  1
2010 Soetandyo N, Wang Q, Ye Y, Li L. Role of intramembrane charged residues in the quality control of unassembled T-cell receptor alpha-chains at the endoplasmic reticulum. Journal of Cell Science. 123: 1031-8. PMID 20332119 DOI: 10.1242/jcs.059758  1
2010 Bernardi KM, Williams JM, Kikkert M, van Voorden S, Wiertz EJ, Ye Y, Tsai B. The E3 ubiquitin ligases Hrd1 and gp78 bind to and promote cholera toxin retro-translocation. Molecular Biology of the Cell. 21: 140-51. PMID 19864457 DOI: 10.1091/mbc.E09-07-0586  1
2009 Ye Y, Rape M. Building ubiquitin chains: E2 enzymes at work. Nature Reviews. Molecular Cell Biology. 10: 755-64. PMID 19851334 DOI: 10.1038/nrm2780  1
2009 Lim PJ, Danner R, Liang J, Doong H, Harman C, Srinivasan D, Rothenberg C, Wang H, Ye Y, Fang S, Monteiro MJ. Ubiquilin and p97/VCP bind erasin, forming a complex involved in ERAD. The Journal of Cell Biology. 187: 201-17. PMID 19822669 DOI: 10.1083/jcb.200903024  1
2009 Li W, Tu D, Li L, Wollert T, Ghirlando R, Brunger AT, Ye Y. Mechanistic insights into active site-associated polyubiquitination by the ubiquitin-conjugating enzyme Ube2g2. Proceedings of the National Academy of Sciences of the United States of America. 106: 3722-7. PMID 19223579 DOI: 10.1073/pnas.0808564106  1
2009 Wang Q, Mora-Jensen H, Weniger MA, Perez-Galan P, Wolford C, Hai T, Ron D, Chen W, Trenkle W, Wiestner A, Ye Y. ERAD inhibitors integrate ER stress with an epigenetic mechanism to activate BH3-only protein NOXA in cancer cells. Proceedings of the National Academy of Sciences of the United States of America. 106: 2200-5. PMID 19164757 DOI: 10.1073/pnas.0807611106  1
2009 Li L, Soetandyo N, Wang Q, Ye Y. The zinc finger protein A20 targets TRAF2 to the lysosomes for degradation. Biochimica Et Biophysica Acta. 1793: 346-53. PMID 18952128 DOI: 10.1016/j.bbamcr.2008.09.013  1
2008 Li W, Ye Y. Polyubiquitin chains: Functions, structures, and mechanisms Cellular and Molecular Life Sciences. 65: 2397-2406. PMID 18438605 DOI: 10.1007/s00018-008-8090-6  1
2008 Li L, Hailey DW, Soetandyo N, Li W, Lippincott-Schwartz J, Shu HB, Ye Y. Localization of A20 to a lysosome-associated compartment and its role in NFkappaB signaling. Biochimica Et Biophysica Acta. 1783: 1140-9. PMID 18329387 DOI: 10.1016/j.bbamcr.2008.01.029  1
2008 Wang Q, Li L, Ye Y. Inhibition of p97-dependent protein degradation by Eeyarestatin I. The Journal of Biological Chemistry. 283: 7445-54. PMID 18199748 DOI: 10.1074/jbc.M708347200  1
2007 Tu D, Li W, Ye Y, Brunger AT. Structure and function of the yeast U-box-containing ubiquitin ligase Ufd2p. Proceedings of the National Academy of Sciences of the United States of America. 104: 15599-606. PMID 17890322 DOI: 10.1073/pnas.0701369104  1
2007 Lu Y, Lv Y, Ye Y, Wang Y, Hong Y, Fortini ME, Zhong Y, Xie Z. A role for presenilin in post-stress regulation: effects of presenilin mutations on Ca2+ currents in Drosophila. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 21: 2368-78. PMID 17428965 DOI: 10.1096/fj.06-6380com  1
2007 Li W, Tu D, Brunger AT, Ye Y. A ubiquitin ligase transfers preformed polyubiquitin chains from a conjugating enzyme to a substrate. Nature. 446: 333-7. PMID 17310145 DOI: 10.1038/nature05542  1
2006 Wang Q, Li L, Ye Y. Regulation of retrotranslocation by p97-associated deubiquitinating enzyme ataxin-3. The Journal of Cell Biology. 174: 963-71. PMID 17000876 DOI: 10.1083/jcb.200605100  1
2006 Seidner GA, Ye Y, Faraday MM, Alvord WG, Fortini ME. Modeling clinically heterogeneous presenilin mutations with transgenic Drosophila. Current Biology : Cb. 16: 1026-33. PMID 16713961 DOI: 10.1016/j.cub.2006.04.004  1
2006 Ye Y. Diverse functions with a common regulator: ubiquitin takes command of an AAA ATPase. Journal of Structural Biology. 156: 29-40. PMID 16529947 DOI: 10.1016/j.jsb.2006.01.005  1
2006 Wang X, Ye Y, Lencer W, Hansen TH. The viral E3 ubiquitin ligase mK3 uses the Derlin/p97 endoplasmic reticulum-associated degradation pathway to mediate down-regulation of major histocompatibility complex class I proteins. The Journal of Biological Chemistry. 281: 8636-44. PMID 16446359 DOI: 10.1074/jbc.M513920200  1
2005 Ye Y. The role of the ubiquitin-proteasome system in ER quality control. Essays in Biochemistry. 41: 99-112. PMID 16250900 DOI: 10.1042/EB0410099  1
2005 Ye Y, Shibata Y, Kikkert M, van Voorden S, Wiertz E, Rapoport TA. Recruitment of the p97 ATPase and ubiquitin ligases to the site of retrotranslocation at the endoplasmic reticulum membrane. Proceedings of the National Academy of Sciences of the United States of America. 102: 14132-8. PMID 16186510 DOI: 10.1073/pnas.0505006102  1
2005 Kothe M, Ye Y, Wagner JS, De Luca HE, Kern E, Rapoport TA, Lencer WI. Role of p97 AAA-ATPase in the retrotranslocation of the cholera toxin A1 chain, a non-ubiquitinated substrate. The Journal of Biological Chemistry. 280: 28127-32. PMID 15932873 DOI: 10.1074/jbc.M503138200  1
2004 Ye Y, Shibata Y, Yun C, Ron D, Rapoport TA. A membrane protein complex mediates retro-translocation from the ER lumen into the cytosol. Nature. 429: 841-7. PMID 15215856 DOI: 10.1038/nature02656  1
2003 Ye Y, Meyer HH, Rapoport TA. Function of the p97-Ufd1-Npl4 complex in retrotranslocation from the ER to the cytosol: dual recognition of nonubiquitinated polypeptide segments and polyubiquitin chains. The Journal of Cell Biology. 162: 71-84. PMID 12847084 DOI: 10.1083/jcb.200302169  1
2003 Flierman D, Ye Y, Dai M, Chau V, Rapoport TA. Polyubiquitin serves as a recognition signal, rather than a ratcheting molecule, during retrotranslocation of proteins across the endoplasmic reticulum membrane. The Journal of Biological Chemistry. 278: 34774-82. PMID 12813030 DOI: 10.1074/jbc.M303360200  1
2002 Tsai B, Ye Y, Rapoport TA. Retro-translocation of proteins from the endoplasmic reticulum into the cytosol. Nature Reviews. Molecular Cell Biology. 3: 246-55. PMID 11994744 DOI: 10.1038/nrm780  1
2002 Hu Y, Ye Y, Fortini ME. Nicastrin is required for gamma-secretase cleavage of the Drosophila Notch receptor. Developmental Cell. 2: 69-78. PMID 11782315 DOI: 10.1016/S1534-5807(01)00105-8  1
2001 Ye Y, Meyer HH, Rapoport TA. The AAA ATPase Cdc48/p97 and its partners transport proteins from the ER into the cytosol. Nature. 414: 652-6. PMID 11740563 DOI: 10.1038/414652a  1
2000 Ye Y, Fortini ME. Proteolysis and developmental signal transduction. Seminars in Cell & Developmental Biology. 11: 211-21. PMID 10906278 DOI: 10.1006/scdb.2000.0167  1
1999 Ye Y, Fortini ME. Apoptotic activities of wild-type and Alzheimer's disease-related mutant presenilins in Drosophila melanogaster. The Journal of Cell Biology. 146: 1351-64. PMID 10491396 DOI: 10.1083/jcb.146.6.1351  1
1999 Ye Y, Lukinova N, Fortini ME. Neurogenic phenotypes and altered Notch processing in Drosophila Presenilin mutants. Nature. 398: 525-9. PMID 10206647 DOI: 10.1038/19096  1
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