| Year |
Citation |
Score |
| 2020 |
Matsumura I. Methylase-assisted subcloning for high throughput BioBrick assembly. Peerj. 8: e9841. PMID 32974095 DOI: 10.7717/Peerj.9841 |
0.331 |
|
| 2020 |
Matsumura I, Chyong D. Statistical noise from recombinant plasmids can be abated via complementation of a ribosomal protein gene deletion. Protein Engineering, Design & Selection : Peds. PMID 32328658 DOI: 10.1093/Protein/Gzaa007 |
0.372 |
|
| 2017 |
Matsumura I. Semi-automated Tip Snip cloning of restriction fragments into and out of plasmid polylinkers. Biotechniques. 62: 99-106. PMID 28298176 DOI: 10.2144/000114522 |
0.354 |
|
| 2015 |
Matsumura I. Why Johnny can't clone: Common pitfalls and not so common solutions. Biotechniques. 59: IV-XIII. PMID 26345511 DOI: 10.2144/000114324 |
0.386 |
|
| 2014 |
Blanchard K, Robic S, Matsumura I. Transformable facultative thermophile Geobacillus stearothermophilus NUB3621 as a host strain for metabolic engineering. Applied Microbiology and Biotechnology. 98: 6715-23. PMID 24788326 DOI: 10.1007/S00253-014-5746-Z |
0.357 |
|
| 2014 |
Falls KC, Williams AL, Bryksin AV, Matsumura I. Escherichia coli deletion mutants illuminate trade-offs between growth rate and flux through a foreign anabolic pathway. Plos One. 9: e88159. PMID 24505410 DOI: 10.1371/Journal.Pone.0088159 |
0.359 |
|
| 2013 |
Kramer JR, Matsumura I. Directed evolution of aminoglycoside phosphotransferase (3') type IIIa variants that inactivate amikacin but impose significant fitness costs. Plos One. 8: e76687. PMID 24204655 DOI: 10.1371/Journal.Pone.0076687 |
0.438 |
|
| 2013 |
Bryksin A, Matsumura I. Overlap extension PCR cloning. Methods in Molecular Biology (Clifton, N.J.). 1073: 31-42. PMID 23996437 DOI: 10.1007/978-1-62703-625-2_4 |
0.369 |
|
| 2013 |
Yip SH, Matsumura I. Substrate ambiguous enzymes within the Escherichia coli proteome offer different evolutionary solutions to the same problem. Molecular Biology and Evolution. 30: 2001-12. PMID 23728795 DOI: 10.1093/Molbev/Mst105 |
0.442 |
|
| 2012 |
Ivanov A, Matsumura I. The adenosine deaminases of Plasmodium vivax and Plasmodium falciparum exhibit surprising differences in ligand specificity. Journal of Molecular Graphics & Modelling. 35: 43-8. PMID 22481078 DOI: 10.1016/J.Jmgm.2012.02.004 |
0.306 |
|
| 2012 |
Murin CD, Segal K, Bryksin A, Matsumura I. Expression vectors for Acinetobacter baylyi ADP1. Applied and Environmental Microbiology. 78: 280-3. PMID 22020504 DOI: 10.1128/Aem.05597-11 |
0.315 |
|
| 2010 |
Bryksin AV, Matsumura I. Overlap extension PCR cloning: a simple and reliable way to create recombinant plasmids. Biotechniques. 48: 463-5. PMID 20569222 DOI: 10.2144/000113418 |
0.401 |
|
| 2009 |
Matsumura I, Ivanov AA. How evolving enzymes can beat the heat and avoid defeat. Nature Chemical Biology. 5: 538-9. PMID 19620993 DOI: 10.1038/Nchembio0809-538 |
0.391 |
|
| 2008 |
Patrick WM, Matsumura I. A study in molecular contingency: glutamine phosphoribosylpyrophosphate amidotransferase is a promiscuous and evolvable phosphoribosylanthranilate isomerase. Journal of Molecular Biology. 377: 323-36. PMID 18272177 DOI: 10.1016/J.Jmb.2008.01.043 |
0.45 |
|
| 2007 |
Patrick WM, Quandt EM, Swartzlander DB, Matsumura I. Multicopy suppression underpins metabolic evolvability. Molecular Biology and Evolution. 24: 2716-22. PMID 17884825 DOI: 10.1093/Molbev/Msm204 |
0.397 |
|
| 2007 |
Geddie ML, Matsumura I. Antibody-induced oligomerization and activation of an engineered reporter enzyme. Journal of Molecular Biology. 369: 1052-9. PMID 17467736 DOI: 10.1016/J.Jmb.2007.03.076 |
0.724 |
|
| 2007 |
Greene DN, Whitney SM, Matsumura I. Artificially evolved Synechococcus PCC6301 Rubisco variants exhibit improvements in folding and catalytic efficiency. The Biochemical Journal. 404: 517-24. PMID 17391103 DOI: 10.1042/Bj20070071 |
0.39 |
|
| 2006 |
Polizzi KM, Parikh M, Spencer CU, Matsumura I, Lee JH, Realff MJ, Bommarius AS. Pooling for improved screening of combinatorial libraries for directed evolution. Biotechnology Progress. 22: 961-7. PMID 16889370 DOI: 10.1021/Bp060099Z |
0.46 |
|
| 2006 |
O'Loughlin TL, Patrick WM, Matsumura I. Natural history as a predictor of protein evolvability. Protein Engineering, Design & Selection : Peds. 19: 439-42. PMID 16868005 DOI: 10.1093/Protein/Gzl029 |
0.447 |
|
| 2006 |
O'Loughlin TL, Matsumura I. HIV protease-activated molecular switches based on beta-glucuronidase and alkaline phosphatase. Combinatorial Chemistry & High Throughput Screening. 9: 313-20. PMID 16724922 DOI: 10.2174/138620706776843219 |
0.444 |
|
| 2006 |
O'Loughlin TL, Greene DN, Matsumura I. Diversification and specialization of HIV protease function during in vitro evolution. Molecular Biology and Evolution. 23: 764-72. PMID 16423863 DOI: 10.1093/Molbev/Msj098 |
0.461 |
|
| 2006 |
Parikh MR, Greene DN, Woods KK, Matsumura I. Directed evolution of RuBisCO hypermorphs through genetic selection in engineered E.coli. Protein Engineering, Design & Selection : Peds. 19: 113-9. PMID 16423843 DOI: 10.1093/Protein/Gzj010 |
0.441 |
|
| 2005 |
Polizzi KM, Spencer CU, Dubey A, Matsumura I, Lee JH, Realff MJ, Bommarius AS. Simulation modeling of pooling for combinatorial protein engineering. Journal of Biomolecular Screening. 10: 856-64. PMID 16234344 DOI: 10.1177/1087057105280134 |
0.453 |
|
| 2005 |
Geddie ML, O'Loughlin TL, Woods KK, Matsumura I. Rational design of p53, an intrinsically unstructured protein, for the fabrication of novel molecular sensors. The Journal of Biological Chemistry. 280: 35641-6. PMID 16118206 DOI: 10.1074/Jbc.M508149200 |
0.735 |
|
| 2005 |
Parikh MR, Matsumura I. Site-saturation mutagenesis is more efficient than DNA shuffling for the directed evolution of beta-fucosidase from beta-galactosidase. Journal of Molecular Biology. 352: 621-8. PMID 16095606 DOI: 10.1016/J.Jmb.2005.07.020 |
0.482 |
|
| 2005 |
Matsumura I, Rowe LA. Whole plasmid mutagenic PCR for directed protein evolution. Biomolecular Engineering. 22: 73-9. PMID 15857786 DOI: 10.1016/J.Bioeng.2004.10.004 |
0.512 |
|
| 2004 |
Geddie ML, Rowe LA, Alexander OB, Matsumura I. High throughput microplate screens for directed protein evolution. Methods in Enzymology. 388: 134-45. PMID 15289067 DOI: 10.1016/S0076-6879(04)88012-1 |
0.711 |
|
| 2004 |
Geddie ML, Matsumura I. Rapid evolution of beta-glucuronidase specificity by saturation mutagenesis of an active site loop. The Journal of Biological Chemistry. 279: 26462-8. PMID 15069062 DOI: 10.1074/Jbc.M401447200 |
0.749 |
|
| 2003 |
Rowe LA, Geddie ML, Alexander OB, Matsumura I. A comparison of directed evolution approaches using the beta-glucuronidase model system. Journal of Molecular Biology. 332: 851-60. PMID 12972256 DOI: 10.1016/S0022-2836(03)00972-0 |
0.736 |
|
| 2002 |
Matsumura I, Ellington AD. Mutagenic polymerase chain reaction of protein-coding genes for in vitro evolution. Methods in Molecular Biology (Clifton, N.J.). 182: 259-67. PMID 11768971 DOI: 10.1385/1-59259-194-9:259 |
0.465 |
|
| 2001 |
Matsumura I, Olsen MJ, Ellington AD. Optimization of heterologous gene expression for in vitro evolution. Biotechniques. 30: 474-6. PMID 11252780 DOI: 10.2144/01303Bm01 |
0.437 |
|
| 2001 |
Matsumura I, Ellington AD. In vitro evolution of beta-glucuronidase into a beta-galactosidase proceeds through non-specific intermediates. Journal of Molecular Biology. 305: 331-9. PMID 11124909 DOI: 10.1006/Jmbi.2000.4259 |
0.61 |
|
| 1999 |
Matsumura I, Wallingford JB, Surana NK, Vize PD, Ellington AD. Directed evolution of the surface chemistry of the reporter enzyme β- glucuronidase Nature Biotechnology. 17: 696-701. PMID 10404164 DOI: 10.1038/10910 |
0.589 |
|
| 1999 |
Matsumura I, Ellington AD. In vitro evolution of thermostable p53 variants. Protein Science : a Publication of the Protein Society. 8: 731-40. PMID 10211819 DOI: 10.1110/Ps.8.4.731 |
0.549 |
|
| 1998 |
Osborne SE, Matsumura I, Ellington AD. Aptamers as therapeutic and diagnostic reagents: problems and prospects. Current Opinion in Chemical Biology. 1: 5-9. PMID 9667829 DOI: 10.1016/S1367-5931(97)80102-0 |
0.448 |
|
| 1998 |
Matsumura I, Ellington AD. DNA shuffling brightens prospects for GFP. Nature Biotechnology. 14: 366. PMID 9630902 DOI: 10.1038/Nbt0396-366 |
0.488 |
|
| 1996 |
Matsumura I, Kirsch JF. Synergistic contributions of asparagine 46 and aspartate 52 to the catalytic mechanism of chicken egg white lysozyme. Biochemistry. 35: 1890-6. PMID 8639671 DOI: 10.1021/Bi951672I |
0.527 |
|
| 1996 |
Matsumura I, Kirsch JF. Is aspartate 52 essential for catalysis by chicken egg white lysozyme? The role of natural substrate-assisted hydrolysis. Biochemistry. 35: 1881-9. PMID 8639670 DOI: 10.1021/Bi951671Q |
0.567 |
|
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