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José R. Dinneny, Ph.D. - Publications

Affiliations: 
2005 University of California, San Diego, La Jolla, CA 
 2011-2018 Plant Biology Carnegie Institution for Science, USA 
 2018- Biology Stanford University, Palo Alto, CA 
Area:
Genetics, Molecular Biology, Plant Physiology
Website:
https://profiles.stanford.edu/jose-dinneny
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68 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Ragland CJ, Shih KY, Dinneny JR. Choreographing root architecture and rhizosphere interactions through synthetic biology. Nature Communications. 15: 1370. PMID 38355570 DOI: 10.1038/s41467-024-45272-5  0.794
2023 Bennett MJ, Brady SM, Dinneny JR, Helariutta Y, Sozzani R. Philip N. Benfey (1953-2023). Developmental Cell. 58: 2413-2415. PMID 37989080 DOI: 10.1016/j.devcel.2023.10.013  0.473
2023 Hirt H, Al-Babili S, Almeida-Trapp M, Antoine M, Aranda M, Bartels D, Bennett M, Blilou I, Boer D, Boulouis A, Bowler C, Brunel-Muguet S, Chardon F, Colcombet J, Colot V, ... ... Dinneny JR, et al. PlantACT! - how to tackle the climate crisis. Trends in Plant Science. PMID 36740490 DOI: 10.1016/j.tplants.2023.01.005  0.714
2022 Dundas CM, Dinneny JR. Genetic Circuit Design in Rhizobacteria. Biodesign Research. 2022: 9858049. PMID 37850138 DOI: 10.34133/2022/9858049  0.771
2022 LaRue T, Lindner H, Srinivas A, Exposito-Alonso M, Lobet G, Dinneny JR. Uncovering natural variation in root system architecture and growth dynamics using a robotics-assisted phenomics platform. Elife. 11. PMID 36047575 DOI: 10.7554/eLife.76968  0.805
2022 Verslues PE, Bailey-Serres J, Brodersen C, Buckley TN, Conti L, Christmann A, Dinneny JR, Grill E, Hayes S, Heckman RW, Hsu PK, Juenger TE, Mas P, Munnik T, Nelissen H, et al. Burning questions for a warming and changing world: 15 unknowns in plant abiotic stress. The Plant Cell. PMID 36018271 DOI: 10.1093/plcell/koac263  0.706
2022 Brophy JAN, Magallon KJ, Duan L, Zhong V, Ramachandran P, Kniazev K, Dinneny JR. Synthetic genetic circuits as a means of reprogramming plant roots. Science (New York, N.Y.). 377: 747-751. PMID 35951698 DOI: 10.1126/science.abo4326  0.804
2022 Sun Y, Oh DH, Duan L, Ramachandran P, Ramirez A, Bartlett A, Tran KN, Wang G, Dassanayake M, Dinneny JR. Divergence in the ABA gene regulatory network underlies differential growth control. Nature Plants. PMID 35501452 DOI: 10.1038/s41477-022-01139-5  0.609
2022 G Viana W, Scharwies JD, Dinneny JR. Deconstructing the root system of grasses through an exploration of development, anatomy and function. Plant, Cell & Environment. 45: 602-619. PMID 35092025 DOI: 10.1111/pce.14270  0.447
2021 Cuevas-Velazquez CL, Vellosillo T, Guadalupe K, Schmidt HB, Yu F, Moses D, Brophy JAN, Cosio-Acosta D, Das A, Wang L, Jones AM, Covarrubias AA, Sukenik S, Dinneny JR. Intrinsically disordered protein biosensor tracks the physical-chemical effects of osmotic stress on cells. Nature Communications. 12: 5438. PMID 34521831 DOI: 10.1038/s41467-021-25736-8  0.748
2021 Dickinson AJ, Zhang J, Luciano M, Wachsman G, Sandoval E, Schnermann M, Dinneny JR, Benfey PN. A plant lipocalin promotes retinal-mediated oscillatory lateral root initiation. Science (New York, N.Y.). PMID 34446443 DOI: 10.1126/science.abf7461  0.52
2021 Friesner J, Colón-Carmona A, Schnoes AM, Stepanova A, Mason GA, Macintosh GC, Ullah H, Baxter I, Callis J, Sierra-Cajas K, Elliott K, Haswell ES, Zavala ME, Wildermuth M, Williams M, ... ... Dinneny JR, et al. Broadening the impact of plant science through innovative, integrative, and inclusive outreach. Plant Direct. 5: e00316. PMID 33870032 DOI: 10.1002/pld3.316  0.771
2021 Duan L, Pérez-Ruiz JM, Cejudo FJ, Dinneny JR. Characterization of CYCLOPHILLIN38 shows that a photosynthesis-derived systemic signal controls lateral root emergence. Plant Physiology. 185: 503-518. PMID 33721893 DOI: 10.1093/plphys/kiaa032  0.4
2020 Dinneny JR. Mechanobiology: Plant Cells Face Pressure from Neighbors. Current Biology : Cb. 30: R344-R346. PMID 32315631 DOI: 10.1016/J.Cub.2020.02.025  0.414
2019 Rui Y, Dinneny JR. A Wall with Integrity: Surveillance and Maintenance of the Plant Cell Wall Under Stress. The New Phytologist. PMID 31486535 DOI: 10.1111/Nph.16166  0.38
2019 Waidmann S, Ruiz Rosquete M, Schöller M, Sarkel E, Lindner H, LaRue T, Petřík I, Dünser K, Martopawiro S, Sasidharan R, Novak O, Wabnik K, Dinneny JR, Kleine-Vehn J. Cytokinin functions as an asymmetric and anti-gravitropic signal in lateral roots. Nature Communications. 10: 3540. PMID 31387989 DOI: 10.1038/S41467-019-11483-4  0.805
2019 Dinneny JR. Developmental Responses to Water and Salinity in Root Systems. Annual Review of Cell and Developmental Biology. PMID 31382759 DOI: 10.1146/Annurev-Cellbio-100617-062949  0.525
2019 Argueso CT, Assmann SM, Birnbaum KD, Chen S, Dinneny JR, Doherty CJ, Eveland AL, Friesner J, Greenlee VR, Law JA, Marshall-Colón A, Mason GA, O'Lexy R, Peck SC, Schmitz RJ, et al. Directions for research and training in plant omics: Big Questions and Big Data. Plant Direct. 3: e00133. PMID 31245771 DOI: 10.1002/pld3.133  0.73
2019 Magallon KJ, Dinneny JR. Environmental Stress: Salinity Ruins a Plant's Day in the Sun. Current Biology : Cb. 29: R360-R362. PMID 31112684 DOI: 10.1016/J.Cub.2019.04.006  0.481
2019 Dickinson AJ, Lehner K, Mi J, Jia KP, Mijar M, Dinneny J, Al-Babili S, Benfey PN. β-Cyclocitral is a conserved root growth regulator. Proceedings of the National Academy of Sciences of the United States of America. PMID 31068462 DOI: 10.1073/Pnas.1821445116  0.641
2019 Scharwies JD, Dinneny JR. Water transport, perception, and response in plants. Journal of Plant Research. PMID 30747327 DOI: 10.1007/S10265-019-01089-8  0.45
2018 Orosa-Puente B, Leftley N, von Wangenheim D, Banda J, Srivastava AK, Hill K, Truskina J, Bhosale R, Morris E, Srivastava M, Kümpers B, Goh T, Fukaki H, Vermeer JEM, Vernoux T, ... Dinneny JR, et al. Root branching toward water involves posttranslational modification of transcription factor ARF7. Science (New York, N.Y.). 362: 1407-1410. PMID 30573626 DOI: 10.1126/Science.Aau3956  0.704
2018 Sechet J, Htwe S, Urbanowicz B, Agyeman A, Feng W, Ishikawa T, Colomes M, Satish Kumar K, Kawai-Yamada M, Dinneny JR, O'Neill MA, Mortimer JC. Suppressing Arabidopsis GGLT1 affects growth by reducing the L-galactose content and borate cross-linking of rhamnogalacturonan II. The Plant Journal : For Cell and Molecular Biology. PMID 30203879 DOI: 10.1111/Tpj.14088  0.374
2018 Wu R, Duan L, Pruneda-Paz J, Oh DH, Pound MP, Kay SA, Dinneny JR. The 6xABRE synthetic promoter enables the spatiotemporal analysis of ABA-mediated transcriptional regulation. Plant Physiology. PMID 29884679 DOI: 10.1104/Pp.18.00401  0.372
2018 Cuevas-Velazquez CL, Dinneny JR. Organization out of disorder: liquid-liquid phase separation in plants. Current Opinion in Plant Biology. 45: 68-74. PMID 29859470 DOI: 10.1016/J.Pbi.2018.05.005  0.351
2018 Sun Y, Dinneny JR. Q&A: How do gene regulatory networks control environmental responses in plants? Bmc Biology. 16: 38. PMID 29642893 DOI: 10.1186/S12915-018-0506-7  0.577
2018 Feng W, Kita D, Peaucelle A, Cartwright HN, Doan V, Duan Q, Liu MC, Maman J, Steinhorst L, Schmitz-Thom I, Yvon R, Kudla J, Wu HM, Cheung AY, Dinneny JR. The FERONIA Receptor Kinase Maintains Cell-Wall Integrity during Salt Stress through CaSignaling. Current Biology : Cb. PMID 29456142 DOI: 10.1016/J.Cub.2018.01.023  0.343
2018 Robbins NE, Dinneny JR. Growth is required for perception of water availability to pattern root branches in plants. Proceedings of the National Academy of Sciences of the United States of America. PMID 29317538 DOI: 10.1073/Pnas.1710709115  0.447
2017 Friesner J, Assmann SM, Bastow R, Bailey-Serres J, Beynon J, Brendel V, Buell CR, Bucksch A, Busch W, Demura T, Dinneny JR, Doherty CJ, Eveland AL, Falter-Braun P, Gehan MA, et al. The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology. Plant Physiology. 175: 1499-1509. PMID 29208732 DOI: 10.1104/Pp.17.01490  0.771
2017 Brophy JAN, LaRue T, Dinneny JR. Understanding and Engineering Plant Form. Seminars in Cell & Developmental Biology. PMID 28864344 DOI: 10.1016/J.Semcdb.2017.08.051  0.796
2017 Feldman MJ, Paul RE, Banan D, Barrett JF, Sebastian J, Yee MC, Jiang H, Lipka AE, Brutnell TP, Dinneny JR, Leakey ADB, Baxter I. Time dependent genetic analysis links field and controlled environment phenotypes in the model C4 grass Setaria. Plos Genetics. 13: e1006841. PMID 28644860 DOI: 10.1371/Journal.Pgen.1006841  0.759
2017 Pruitt RN, Joe A, Zhang W, Feng W, Stewart V, Schwessinger B, Dinneny JR, Ronald PC. A microbially derived tyrosine-sulfated peptide mimics a plant peptide hormone. The New Phytologist. PMID 28556915 DOI: 10.1111/Nph.14609  0.308
2017 Dietrich D, Pang L, Kobayashi A, Fozard JA, Boudolf V, Bhosale R, Antoni R, Nguyen T, Hiratsuka S, Fujii N, Miyazawa Y, Bae TW, Wells DM, Owen MR, Band LR, ... ... Dinneny JR, et al. Root hydrotropism is controlled via a cortex-specific growth mechanism. Nature Plants. 3: 17057. PMID 28481327 DOI: 10.1038/Nplants.2017.57  0.472
2016 Feng W, Lindner H, Robbins NE, Dinneny JR. Growing Out of Stress: The Role of Cell- and Organ-scale Growth Control in Plant Water-stress Responses. The Plant Cell. PMID 27503468 DOI: 10.1105/Tpc.16.00182  0.484
2016 Sebastian J, Yee MC, Goudinho Viana W, Rellán-Álvarez R, Feldman M, Priest HD, Trontin C, Lee T, Jiang H, Baxter I, Mockler TC, Hochholdinger F, Brutnell TP, Dinneny JR. Grasses suppress shoot-borne roots to conserve water during drought. Proceedings of the National Academy of Sciences of the United States of America. PMID 27422554 DOI: 10.1073/Pnas.1604021113  0.805
2016 Fahlgren N, Bart R, Herrera-Estrella L, Rellán-Álvarez R, Chitwood DH, Dinneny JR. Plant scientists: GM technology is safe. Science (New York, N.Y.). 351: 824. PMID 26912883 DOI: 10.1126/Science.351.6275.824-A  0.743
2016 Rellán-Álvarez R, Lobet G, Dinneny JR. Environmental Control of Root System Biology. Annual Review of Plant Biology. 67: 619-42. PMID 26905656 DOI: 10.1146/Annurev-Arplant-043015-111848  0.791
2016 Robbins II N, Dinneny J. A Method to Analyze Local and Systemic Effects of Environmental Stimuli on Root Development in Plants Bio-Protocol. 6. DOI: 10.21769/BIOPROTOC.1923  0.362
2015 Rellán-Álvarez R, Lobet G, Lindner H, Pradier PL, Sebastian J, Yee MC, Geng Y, Trontin C, LaRue T, Schrager-Lavelle A, Haney CH, Nieu R, Maloof J, Vogel JP, Dinneny JR. GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems. Elife. 4. PMID 26287479 DOI: 10.7554/Elife.07597  0.782
2015 Robbins NE, Dinneny JR. The divining root: moisture-driven responses of roots at the micro- and macro-scale. Journal of Experimental Botany. 66: 2145-54. PMID 25617469 DOI: 10.1093/Jxb/Eru496  0.444
2015 Dinneny JR. Traversing organizational scales in plant salt-stress responses. Current Opinion in Plant Biology. 23: 70-5. PMID 25449729 DOI: 10.1016/J.Pbi.2014.10.009  0.437
2015 Duan L, Sebastian J, Dinneny JR. Salt-stress regulation of root system growth and architecture in Arabidopsis seedlings. Methods in Molecular Biology (Clifton, N.J.). 1242: 105-22. PMID 25408448 DOI: 10.1007/978-1-4939-1902-4_10  0.782
2015 Velasquez SM, Dinneny JR, Estevez JM. Live imaging of root hairs. Methods in Molecular Biology (Clifton, N.J.). 1242: 59-66. PMID 25408443 DOI: 10.1007/978-1-4939-1902-4_5  0.492
2015 Rellán-Álvarez R, Lobet G, Lindner H, Pradier P, Sebastian J, Yee M, Geng Y, Trontin C, LaRue T, Schrager-Lavelle A, Haney CH, Nieu R, Maloof J, Vogel JP, Dinneny JR. Author response: GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems Elife. DOI: 10.7554/Elife.07597.058  0.757
2015 Dinneny JR. A developmental biologist’s journey to rediscover the Zen of plant physiology F1000research. 4: 264. DOI: 10.12688/F1000Research.6167.1  0.505
2014 Robbins NE, Trontin C, Duan L, Dinneny JR. Beyond the barrier: communication in the root through the endodermis. Plant Physiology. 166: 551-9. PMID 25125504 DOI: 10.1104/Pp.114.244871  0.401
2014 Bao Y, Aggarwal P, Robbins NE, Sturrock CJ, Thompson MC, Tan HQ, Tham C, Duan L, Rodriguez PL, Vernoux T, Mooney SJ, Bennett MJ, Dinneny JR. Plant roots use a patterning mechanism to position lateral root branches toward available water. Proceedings of the National Academy of Sciences of the United States of America. 111: 9319-24. PMID 24927545 DOI: 10.1073/Pnas.1400966111  0.516
2014 Sebastian J, Wong MK, Tang E, Dinneny JR. Methods to promote germination of dormant Setaria viridis seeds. Plos One. 9: e95109. PMID 24748008 DOI: 10.1371/Journal.Pone.0095109  0.727
2014 Dinneny JR. A gateway with a guard: how the endodermis regulates growth through hormone signaling. Plant Science : An International Journal of Experimental Plant Biology. 214: 14-9. PMID 24268159 DOI: 10.1016/J.Plantsci.2013.09.009  0.443
2013 Emami S, Yee MC, Dinneny JR. A robust family of Golden Gate Agrobacterium vectors for plant synthetic biology. Frontiers in Plant Science. 4: 339. PMID 24032037 DOI: 10.3389/Fpls.2013.00339  0.472
2013 Geng Y, Wu R, Wee CW, Xie F, Wei X, Chan PM, Tham C, Duan L, Dinneny JR. A spatio-temporal understanding of growth regulation during the salt stress response in Arabidopsis. The Plant Cell. 25: 2132-54. PMID 23898029 DOI: 10.1105/Tpc.113.112896  0.41
2013 Duan L, Dietrich D, Ng CH, Chan PM, Bhalerao R, Bennett MJ, Dinneny JR. Endodermal ABA signaling promotes lateral root quiescence during salt stress in Arabidopsis seedlings. The Plant Cell. 25: 324-41. PMID 23341337 DOI: 10.1105/Tpc.112.107227  0.446
2010 Wee CW, Dinneny JR. Tools for high-spatial and temporal-resolution analysis of environmental responses in plants. Biotechnology Letters. 32: 1361-71. PMID 20502944 DOI: 10.1007/S10529-010-0307-8  0.479
2010 Dinneny JR. Analysis of the salt-stress response at cell-type resolution. Plant, Cell & Environment. 33: 543-51. PMID 19843253 DOI: 10.1111/J.1365-3040.2009.02055.X  0.438
2009 Orlando DA, Brady SM, Koch JD, Dinneny JR, Benfey PN. Manipulating large-scale Arabidopsis microarray expression data: identifying dominant expression patterns and biological process enrichment. Methods in Molecular Biology (Clifton, N.J.). 553: 57-77. PMID 19588101 DOI: 10.1007/978-1-60327-563-7_4  0.777
2008 Dinneny JR, Long TA, Wang JY, Jung JW, Mace D, Pointer S, Barron C, Brady SM, Schiefelbein J, Benfey PN. Cell identity mediates the response of Arabidopsis roots to abiotic stress. Science (New York, N.Y.). 320: 942-5. PMID 18436742 DOI: 10.1126/Science.1153795  0.773
2008 Dinneny JR, Benfey PN. Plant stem cell niches: standing the test of time. Cell. 132: 553-7. PMID 18295573 DOI: 10.1016/J.Cell.2008.02.001  0.615
2008 Filiault DL, Wessinger CA, Dinneny JR, Lutes J, Borevitz JO, Weigel D, Chory J, Maloof JN. Amino acid polymorphisms in Arabidopsis phytochrome B cause differential responses to light. Proceedings of the National Academy of Sciences of the United States of America. 105: 3157-62. PMID 18287016 DOI: 10.1073/Pnas.0712174105  0.69
2007 Brady SM, Orlando DA, Lee JY, Wang JY, Koch J, Dinneny JR, Mace D, Ohler U, Benfey PN. A high-resolution root spatiotemporal map reveals dominant expression patterns. Science (New York, N.Y.). 318: 801-6. PMID 17975066 DOI: 10.1126/Science.1146265  0.785
2006 Dinneny JR, Weigel D, Yanofsky MF. NUBBIN and JAGGED define stamen and carpel shape in Arabidopsis. Development (Cambridge, England). 133: 1645-55. PMID 16554365 DOI: 10.1242/Dev.02335  0.698
2005 Dinneny JR, Benfey PN. Stem cell research goes underground: the RETINOBLASTOMA-RELATED gene in root development. Cell. 123: 1180-2. PMID 16377557 DOI: 10.1016/J.Cell.2005.12.005  0.641
2005 Dinneny JR, Weigel D, Yanofsky MF. A genetic framework for fruit patterning in Arabidopsis thaliana. Development (Cambridge, England). 132: 4687-96. PMID 16192305 DOI: 10.1242/Dev.02062  0.712
2005 Dinneny JR, Yanofsky MF. Drawing lines and borders: how the dehiscent fruit of Arabidopsis is patterned. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 27: 42-9. PMID 15612035 DOI: 10.1002/Bies.20165  0.686
2004 Dinneny JR, Yanofsky MF. Floral development: an ABC gene chips in downstream. Current Biology : Cb. 14: R840-1. PMID 15458662 DOI: 10.1016/J.Cub.2004.09.037  0.606
2004 Dinneny JR, Yanofsky MF. Vascular patterning: xylem or phloem? Current Biology : Cb. 14: R112-4. PMID 14986642 DOI: 10.1016/J.Cub.2004.01.017  0.644
2004 Dinneny JR, Yadegari R, Fischer RL, Yanofsky MF, Weigel D. The role of JAGGED in shaping lateral organs. Development (Cambridge, England). 131: 1101-10. PMID 14973282 DOI: 10.1242/Dev.00949  0.683
2003 Wu X, Dinneny JR, Crawford KM, Rhee Y, Citovsky V, Zambryski PC, Weigel D. Modes of intercellular transcription factor movement in the Arabidopsis apex. Development (Cambridge, England). 130: 3735-45. PMID 12835390 DOI: 10.1242/Dev.00577  0.505
1999 Kiyosue T, Ohad N, Yadegari R, Hannon M, Dinneny J, Wells D, Katz A, Margossian L, Harada JJ, Goldberg RB, Fischer RL. Control of fertilization-independent endosperm development by the MEDEA polycomb gene in Arabidopsis Proceedings of the National Academy of Sciences of the United States of America. 96: 4186-4191. PMID 10097185 DOI: 10.1073/Pnas.96.7.4186  0.347
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