Kenneth A. Johnson - Related publications

Biochemistry University of Texas at Austin, Austin, Texas, U.S.A. 
Cellular and Molecular Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Wang Y, Hanrahan G, Azar FA, Mittermaier A. Binding interactions in a kinase active site modulate background ATP hydrolysis. Biochimica Et Biophysica Acta. Proteins and Proteomics. 140720. PMID 34597835 DOI: 10.1016/j.bbapap.2021.140720   
2021 Liu Y, Zhang F, Jiang L, Perry JJP, Zhao Z, Liao J. Product inhibition kinetics determinations - Substrate interaction affinity and enzymatic kinetics using one quantitative FRET assay. International Journal of Biological Macromolecules. PMID 34780893 DOI: 10.1016/j.ijbiomac.2021.10.211   
2021 Guimarães AVF, Frota NF, Lourenzoni MR. Molecular dynamics simulations of human L-asparaginase1: Insights into structural determinants of enzymatic activity. Journal of Molecular Graphics & Modelling. 109: 108007. PMID 34461521 DOI: 10.1016/j.jmgm.2021.108007   
2021 Lee R, Kim V, Chun Y, Kim D. Structure-Functional Analysis of Human Cytochrome P450 2C8 Using Directed Evolution. Pharmaceutics. 13. PMID 34575505 DOI: 10.3390/pharmaceutics13091429   
2021 Pan X, Yang J, Xie P, Zhang J, Ke F, Guo X, Liang M, Liu L, Wang Q, Gao X. Enhancement of Activity and Thermostability of Keratinase From CCTCC AB2013184 by Directed Evolution With Noncanonical Amino Acids. Frontiers in Bioengineering and Biotechnology. 9: 770907. PMID 34733836 DOI: 10.3389/fbioe.2021.770907   
2021 Azimi F, Azizian H, Najafi M, Khodarahmi G, Saghaei L, Hassanzadeh M, Ghasemi JB, Faramarzi MA, Larijani B, Hassanzadeh F, Mahdavi M. Design, synthesis, biological evaluation, and molecular modeling studies of pyrazole-benzofuran hybrids as new α-glucosidase inhibitor. Scientific Reports. 11: 20776. PMID 34675367 DOI: 10.1038/s41598-021-99899-1   
2021 Wang L, Cao K, Pedroso MM, Wu B, Gao Z, He B, Schenk G. Sequence- and structure-guided improvement of the catalytic performance of a GH11 family xylanase from Bacillus subtilis. The Journal of Biological Chemistry. 297: 101262. PMID 34600889 DOI: 10.1016/j.jbc.2021.101262   
2021 Campomizzi CS, Ghanatios GE, Estrada DF. F-NMR reveals substrate specificity of CYP121A1 in Mycobacterium tuberculosis. The Journal of Biological Chemistry. 101287. PMID 34634307 DOI: 10.1016/j.jbc.2021.101287   
2021 Zhang YX, Yang JW, Wu YY, Hu XQ, Zhang HB. The stability improvement of dextransucrase by artificial extension modification of the V domain of the enzyme. Enzyme and Microbial Technology. 151: 109919. PMID 34649690 DOI: 10.1016/j.enzmictec.2021.109919   
2021 Paik I, Ngo PHT, Shroff R, Diaz DJ, Maranhao AC, Walker DJF, Bhadra S, Ellington AD. Improved Bst DNA Polymerase Variants Derived a Machine Learning Approach. Biochemistry. PMID 34762799 DOI: 10.1021/acs.biochem.1c00451   
2021 Keziah SM, Devi CS. Fibrinolytic and ACE Inhibitory Activity of Nattokinase Extracted from Bacillus subtilis VITMS 2: A Strain Isolated from Fermented Milk of Vigna unguiculata. The Protein Journal. 40: 876-890. PMID 34611797 DOI: 10.1007/s10930-021-10023-8   
2021 Dey D, Dhar D, Fortunato H, Obata D, Tanaka A, Tanaka R, Basu S, Ito H. Insights into the structure and function of the rate-limiting enzyme of chlorophyll degradation through analysis of a bacterial Mg-dechelatase homolog. Computational and Structural Biotechnology Journal. 19: 5333-5347. PMID 34745453 DOI: 10.1016/j.csbj.2021.09.023   
2021 Nakamura S, Nihira T, Kurata R, Nakai H, Funane K, Park EY, Miyazaki T. Structure of a bacterial α-1,2-glucosidase defines mechanisms of hydrolysis and substrate specificity in GH65 family hydrolases. The Journal of Biological Chemistry. 101366. PMID 34728215 DOI: 10.1016/j.jbc.2021.101366   
2021 Gavgani HN, Fawaz R, Ehyaei N, Walls D, Pawlowski K, Fulgos R, Park S, Assar Z, Ghanbarpour A, Geiger JH. A structural explanation for the mechanism and specificity of plant branching enzymes I and IIb. The Journal of Biological Chemistry. 101395. PMID 34762912 DOI: 10.1016/j.jbc.2021.101395   
2021 Hansen AL, Koivisto JM, Simonsen S, Dong Z, Crehuet R, Hansen DK, Willemoës M. Identification of a Catalytic Nucleophile-Activating Network in the endoαAcetylgalactosaminidase of Family GH101. Biochemistry. PMID 34694774 DOI: 10.1021/acs.biochem.1c00596   
2021 Erickson E, Shakespeare TJ, Bratti F, Buss BL, Graham R, Hawkins MA, König G, Michener WE, Miscall J, Ramirez KJ, Rorrer NA, Zahn M, Pickford AR, McGeehan JE, Beckham G. Comparative performance of PETase as a function of reaction conditions, substrate properties, and product accumulation. Chemsuschem. PMID 34587366 DOI: 10.1002/cssc.202101932   
2021 Jin LQ, Jin YT, Zhang JW, Liu ZQ, Zheng YG. Enhanced catalytic efficiency and thermostability of glucose isomerase from Thermoanaerobacter ethanolicus via site-directed mutagenesis. Enzyme and Microbial Technology. 152: 109931. PMID 34688091 DOI: 10.1016/j.enzmictec.2021.109931   
2021 Lin P, Dinh H, Nakata E, Morii T. Conditional dependence of enzyme cascade reaction efficiency on the inter-enzyme distance. Chemical Communications (Cambridge, England). PMID 34622899 DOI: 10.1039/d1cc04162b   
2021 Bathe U, Leong BJ, McCarty DR, Henry CS, Abraham PE, Wilson MA, Hanson AD. The Moderately (D)efficient Enzyme: Catalysis-Related Damage and Its Repair. Biochemistry. PMID 34729986 DOI: 10.1021/acs.biochem.1c00613   
2021 Kang JM, Lê HG, Na BK, Yoo WG. pH-Dependent Structural Dynamics of Cathepsin D-Family Aspartic Peptidase of . Pathogens (Basel, Switzerland). 10. PMID 34578162 DOI: 10.3390/pathogens10091128   
2021 Guo J, Wang Y, Zhang X, Gao W, Cai Z, Hong T, Man Z, Qing Q. Improvement of the Catalytic Activity of Chitosanase BsCsn46A from by Site-Saturation Mutagenesis of Proline121. Journal of Agricultural and Food Chemistry. PMID 34590486 DOI: 10.1021/acs.jafc.1c04206   
2021 Sharma V, Pugazhenthi G, Vasanth D. Production and characterization of a novel thermostable laccase from Bacillus licheniformis VNQ and its application in synthesis of bioactive 1,4-naphthoquinones. Journal of Bioscience and Bioengineering. PMID 34629297 DOI: 10.1016/j.jbiosc.2021.09.008   
2021 Venkatachalam KV, Ettrich RH. Role of aspartic acid residues D87 and D89 in APS kinase domain of human 3'-phosphoadenosine 5'-phosphosulfate synthase 1 and 2b: A commonality with phosphatases/kinases. Biochemistry and Biophysics Reports. 28: 101155. PMID 34712849 DOI: 10.1016/j.bbrep.2021.101155   
2021 Yan Y, Guan W, Li X, Gao K, Xu X, Liu B, Zhang W, Zhang Y. β-galactosidase GALA from with high transgalactosylation activity. Bioengineered. PMID 34606421 DOI: 10.1080/21655979.2021.1988370   
2021 Cabezas-Pérusse Y, Daligault F, Ferrières V, Tasseau O, Tranchimand S. Modulation of the Activity and Regioselectivity of a Glycosidase: Development of a Convenient Tool for the Synthesis of Specific Disaccharides. Molecules (Basel, Switzerland). 26. PMID 34576917 DOI: 10.3390/molecules26185445   
2021 Chiadò A, Bosco F, Bardelli M, Simonelli L, Pedotti M, Marmo L, Varani L. Rational engineering of the lccβ laccase for the mediator-less oxidation of large polycyclic aromatic hydrocarbons. Computational and Structural Biotechnology Journal. 19: 2213-2222. PMID 33995914 DOI: 10.1016/j.csbj.2021.03.017   
2021 Kemp MT, Nichols DA, Zhang X, Defrees K, Na I, Renslo AR, Chen Y. Mutation of the conserved Asp-Asp pair impairs the structure, function, and inhibition of CTX-M Class A β-lactamase. Febs Letters. PMID 34704263 DOI: 10.1002/1873-3468.14215   
2021 Ahn WC, An Y, Song KM, Park KH, Lee SJ, Oh BH, Park JT, Woo EJ. Dimeric architecture of maltodextrin glucosidase (MalZ) provides insights into the substrate recognition and hydrolysis mechanism. Biochemical and Biophysical Research Communications. 586: 49-54. PMID 34826700 DOI: 10.1016/j.bbrc.2021.11.070   
2021 Dai L, Chang Z, Yang J, Liu W, Yang Y, Chen CC, Zhang L, Huang JW, Sun Y, Guo RT. Structural investigation of a thermostable 1,2-β-mannobiose phosphorylase from Thermoanaerobacter sp. X-514. Biochemical and Biophysical Research Communications. 579: 54-61. PMID 34587555 DOI: 10.1016/j.bbrc.2021.09.046   
2021 Maruyama S, Sawano K, Amaki S, Suzuki T, Narita S, Kimura K, Arakawa T, Yamada C, Ito Y, Dohmae N, Fujita K, Ishiwata A, Fushinobu S. Substrate complex structure, active site labeling and catalytic role of the zinc ion in cysteine glycosidase. Glycobiology. PMID 34735571 DOI: 10.1093/glycob/cwab103   
2021 Shi Q, Chen Y, Li X, Dong H, Chen C, Zhong Z, Yang C, Liu G, Su D. The tetrameric assembly of 2-aminomuconic 6-semialdehyde dehydrogenase is a functional requirement of cofactor NAD binding. Environmental Microbiology. PMID 34806815 DOI: 10.1111/1462-2920.15840   
2021 Heid E, Goldman S, Sankaranarayanan K, Coley CW, Flamm C, Green WH. EHreact: Extended Hasse Diagrams for the Extraction and Scoring of Enzymatic Reaction Templates. Journal of Chemical Information and Modeling. PMID 34587449 DOI: 10.1021/acs.jcim.1c00921   
2021 Vannoy KJ, Ryabykh A, Chapoval AI, Dick JE. Single enzyme electroanalysis. The Analyst. 146: 3413-3421. PMID 33881059 DOI: 10.1039/d1an00230a   
2021 Wang Y, Liu M, Li J, Wei H, Zhang K. Experimental and in silico studies of competitive inhibition of family GH10 Aspergillus fumigatus xylanase A by Oryza sativa xylanase inhibitor protein. International Journal of Biological Macromolecules. PMID 34742846 DOI: 10.1016/j.ijbiomac.2021.10.201   
2021 Gu J, Sim BR, Li J, Yu Y, Qin L, Wu L, Shen Y, Nie Y, Zhao YL, Xu Y. Evolutionary coupling-inspired engineering of alcohol dehydrogenase reveals the influence of distant sites on its catalytic efficiency for stereospecific synthesis of chiral alcohols. Computational and Structural Biotechnology Journal. 19: 5864-5873. PMID 34815831 DOI: 10.1016/j.csbj.2021.10.031   
2021 Vittorazzi PC, Marques JA, Takiya CS, Chesini RG, Bugoni M, da Silva GG, Nunes AT, Silva TBP, Dias MSS, Grigoletto NTS, Cortinhas CS, Acedo TS, Renno FP. Increasing doses of carbohydrases: Effects on rumen fermentation, nutrient digestibility, and performance of mid-lactation cows. Journal of Dairy Science. 104: 12508-12519. PMID 34600703 DOI: 10.3168/jds.2021-20514   
2021 Wang L, Sun P, Yang Y, Qiao H, Tian H, Wu D, Yang S, Yuan Q, Wang J. Preparation of ZIF@ADH/NAD-MSN/LDH Core Shell Nanocomposites for the Enhancement of Coenzyme Catalyzed Double Enzyme Cascade. Nanomaterials (Basel, Switzerland). 11. PMID 34578486 DOI: 10.3390/nano11092171   
2021 Ni G, Zhong L, Xia C, Zhang L, Dai L, Chen R, Zhao Y, Wang F. Phenylalanine 314 is essential for the activity of maltogenic amylase from Corallococcus sp. EGB. Biotechnology and Applied Biochemistry. PMID 34775631 DOI: 10.1002/bab.2282   
2021 Chirgadze YN, Battaile KP, Likhachev IV, Balabaev NK, Gordon RD, Romanov V, Lin A, Karisch R, Lam R, Ruzanov M, Brazhnikov EV, Pai EF, Neel BG, Chirgadze NY. Signal transfer in human protein tyrosine phosphatase PTP1B from allosteric inhibitor P00058. Journal of Biomolecular Structure & Dynamics. 1-10. PMID 34705594 DOI: 10.1080/07391102.2021.1994879   
2021 Tran LT, Techato K, Nguyen VB, Wang SL, Nguyen AD, Phan TQ, Doan MD, Phoungthong K. Utilization of Cassava Wastewater for Low-Cost Production of Prodigiosin via TNU01 Fermentation and Its Novel Potent α-Glucosidase Inhibitory Effect. Molecules (Basel, Switzerland). 26. PMID 34684851 DOI: 10.3390/molecules26206270   
2021 Wang L, Wang Y, Chang S, Gao Z, Ma J, Wu B, He B, Wei P. Identification and characterization of a thermostable GH11 xylanase from Paenibacillus campinasensis NTU-11 and the distinct roles of its carbohydrate-binding domain and linker sequence. Colloids and Surfaces. B, Biointerfaces. 209: 112167. PMID 34715594 DOI: 10.1016/j.colsurfb.2021.112167   
2021 Zada NS, Belduz AO, Güler HI, Sahinkaya M, Khan SI, Saba M, Bektas KI, Kara Y, Kolaylı S, Badshah M, Shah AA, Khan S. Cloning, biochemical characterization and molecular docking of novel thermostable β-glucosidase BglA9 from Anoxybacillus Ayderensis A9 and its application in de-glycosylation of Polydatin. International Journal of Biological Macromolecules. PMID 34793813 DOI: 10.1016/j.ijbiomac.2021.11.021   
2021 Gouda H, Mascarenhas R, Pillay S, Ruetz M, Koutmos M, Banerjee R. Patient mutations in human ATP:cob(I)alamin adenosyltransferase differentially affect its catalytic versus chaperone functions. The Journal of Biological Chemistry. 101373. PMID 34757128 DOI: 10.1016/j.jbc.2021.101373   
2021 Liao X, Teng L, Li W. Isolation and production of organic solvent tolerant protease from bacterial burn infection, Staphylococcus aureus KP091274. Cellular and Molecular Biology (Noisy-Le-Grand, France). 67: 142-147. PMID 34817325 DOI: 10.14715/cmb/2021.67.2.22   
2021 Battiston CSZ, Ficanha AMM, Oro CED, Dallago RM, Mignoni ML. In Situ Calb Enzyme Immobilization in Mesoporous Material Type MCM-48 Synthesis Using Ionic Solid [CMI]Cl as Structure-Directing Agent. Applied Biochemistry and Biotechnology. PMID 34524635 DOI: 10.1007/s12010-021-03648-z   
2021 Fuentes-Ugarte N, Herrera SM, Maturana P, Castro-Fernandez V, Guixé V. Structural and Kinetic Insights Into the Molecular Basis of Salt Tolerance of the Short-Chain Glucose-6-Phosphate Dehydrogenase From . Frontiers in Microbiology. 12: 730429. PMID 34650535 DOI: 10.3389/fmicb.2021.730429   
2021 Ahmed A, Akhtar S, Mushtaq N, Haider S, Munawar R, Siddique HA, Akram A, Saify ZS, Arif M. 1,3-di-4-piperidylpropane derivatives as potential acetyl cholinesterase antagonists: Molecular docking, synthesis, and biological evaluation. Pakistan Journal of Pharmaceutical Sciences. 34: 855-860. PMID 34602406   
2021 Arif T, Currie MJ, Dobson RCJ, Newson HL, Poonthiyil V, Fairbanks AJ, North RA, Rendle PM. Synthesis of N-acetylmannosamine-6-phosphate derivatives to investigate the mechanism of N-acetylmannosamine-6-phosphate 2-epimerase. Carbohydrate Research. 510: 108445. PMID 34607125 DOI: 10.1016/j.carres.2021.108445   
2021 Li Q, Ge L, Zheng D, Zhang X, Zhao L. Screening and characterization of a GH78 α-l-rhamnosidase from Aspergillus terreus and its application in the bioconversion of icariin to icaritin with recombinant β-glucosidase. Enzyme and Microbial Technology. 153: 109940. PMID 34781207 DOI: 10.1016/j.enzmictec.2021.109940   
2021 , Lambré C, Barat Baviera JM, Bolognesi C, Cocconcelli PS, Crebelli R, Gott DM, Grob K, Lampi E, Mengelers M, Mortensen A, Rivière G, Steffensen IL, Tlustos C, Van Loveren H, et al. Safety evaluation of the food enzyme d-psicose 3-epimerase from the genetically modified strain FIS002. Efsa Journal. European Food Safety Authority. 19: e06870. PMID 34703502 DOI: 10.2903/j.efsa.2021.6870