Year |
Citation |
Score |
2023 |
Johnson JL, Yaron TM, Huntsman EM, Kerelsky A, Song J, Regev A, Lin TY, Liberatore K, Cizin DM, Cohen BM, Vasan N, Ma Y, Krismer K, Robles JT, van de Kooij B, ... ... Linding R, et al. An atlas of substrate specificities for the human serine/threonine kinome. Nature. PMID 36631611 DOI: 10.1038/s41586-022-05575-3 |
0.332 |
|
2019 |
Santini CC, Longden J, Schoof EM, Simpson CD, Jeschke GR, Creixell P, Kim J, Wu X, Turk BE, Rosen N, Poulikakos PI, Linding R. Global view of the RAF-MEK-ERK module and its immediate downstream effectors. Scientific Reports. 9: 10865. PMID 31350469 DOI: 10.1038/S41598-019-47245-X |
0.387 |
|
2019 |
van de Kooij B, Creixell P, van Vlimmeren A, Joughin B, Miller CJ, Haider N, Simpson CD, Linding R, Stambolic V, Turk BE, Yaffe MB. Comprehensive substrate specificity profiling of the human Nek kinome reveals unexpected signaling outputs. Elife. 8. PMID 31124786 DOI: 10.7554/Elife.44635 |
0.369 |
|
2019 |
Miller CJ, Lou HJ, Simpson C, van de Kooij B, Ha BH, Fisher OS, Pirman NL, Boggon TJ, Rinehart J, Yaffe MB, Linding R, Turk BE. Comprehensive profiling of the STE20 kinase family defines features essential for selective substrate targeting and signaling output. Plos Biology. 17: e2006540. PMID 30897078 DOI: 10.1371/Journal.Pbio.2006540 |
0.401 |
|
2018 |
Inkster B, Simmons A, Cole J, Schoof E, Linding R, Nichols T, Muglia P, Holsboer F, Saemann P, McGuffin P, Fu C, Miskowiak K, Matthews PM, Zai G, Nicodemus K. Unravelling the GSK3β-related genotypic interaction network influencing hippocampal volume in recurrent major depressive disorder. Psychiatric Genetics. PMID 30080747 DOI: 10.1097/Ypg.0000000000000203 |
0.309 |
|
2015 |
Cox TR, Schoof EM, Gartland A, Erler JT, Linding R. Dataset for the proteomic inventory and quantitative analysis of the breast cancer hypoxic secretome associated with osteotropism. Data in Brief. 5: 621-625. PMID 26649326 DOI: 10.1016/J.Dib.2015.09.039 |
0.309 |
|
2015 |
Creixell P, Palmeri A, Miller CJ, Lou HJ, Santini CC, Nielsen M, Turk BE, Linding R. Unmasking Determinants of Specificity in the Human Kinome. Cell. 163: 187-201. PMID 26388442 DOI: 10.1016/J.Cell.2015.08.057 |
0.434 |
|
2015 |
Creixell P, Schoof EM, Simpson CD, Longden J, Miller CJ, Lou HJ, Perryman L, Cox TR, Zivanovic N, Palmeri A, Wesolowska-Andersen A, Helmer-Citterich M, Ferkinghoff-Borg J, Itamochi H, Bodenmiller B, ... ... Linding R, et al. Kinome-wide Decoding of Network-Attacking Mutations Rewiring Cancer Signaling. Cell. 163: 202-17. PMID 26388441 DOI: 10.1016/J.Cell.2015.08.056 |
0.39 |
|
2015 |
So J, Pasculescu A, Dai AY, Williton K, James A, Nguyen V, Creixell P, Schoof EM, Sinclair J, Barrios-Rodiles M, Gu J, Krizus A, Williams R, Olhovsky M, Dennis JW, ... ... Linding R, et al. Integrative analysis of kinase networks in TRAIL-induced apoptosis provides a source of potential targets for combination therapy. Science Signaling. 8: rs3. PMID 25852190 DOI: 10.1126/Scisignal.2005700 |
0.39 |
|
2014 |
Maiolica A, de Medina-Redondo M, Schoof EM, Chaikuad A, Villa F, Gatti M, Jeganathan S, Lou HJ, Novy K, Hauri S, Toprak UH, Herzog F, Meraldi P, Penengo L, Turk BE, ... ... Linding R, et al. Modulation of the chromatin phosphoproteome by the Haspin protein kinase. Molecular & Cellular Proteomics : McP. 13: 1724-40. PMID 24732914 DOI: 10.1074/Mcp.M113.034819 |
0.412 |
|
2014 |
Djidja MC, Chang J, Hadjiprocopis A, Schmich F, Sinclair J, Mršnik M, Schoof EM, Barker HE, Linding R, Jørgensen C, Erler JT. Identification of hypoxia-regulated proteins using MALDI-mass spectrometry imaging combined with quantitative proteomics. Journal of Proteome Research. 13: 2297-313. PMID 24702160 DOI: 10.1021/Pr401056C |
0.363 |
|
2014 |
Schoof EM, Linding R. Experimental and computational tools for analysis of signaling networks in primary cells. Current Protocols in Immunology / Edited by John E. Coligan ... [Et Al.]. 104: Unit 11.11.. PMID 24510617 DOI: 10.1002/0471142735.Im1111S104 |
0.451 |
|
2014 |
Pasculescu A, Schoof EM, Creixell P, Zheng Y, Olhovsky M, Tian R, So J, Vanderlaan RD, Pawson T, Linding R, Colwill K. CoreFlow: a computational platform for integration, analysis and modeling of complex biological data. Journal of Proteomics. 100: 167-73. PMID 24503186 DOI: 10.1016/J.Jprot.2014.01.023 |
0.3 |
|
2013 |
Browne BC, Hochgräfe F, Wu J, Millar EK, Barraclough J, Stone A, McCloy RA, Lee CS, Roberts C, Ali NA, Boulghourjian A, Schmich F, Linding R, Farrow L, Gee JM, et al. Global characterization of signalling networks associated with tamoxifen resistance in breast cancer. The Febs Journal. 280: 5237-57. PMID 23876235 DOI: 10.1111/Febs.12441 |
0.391 |
|
2013 |
Zanivan S, Meves A, Behrendt K, Schoof EM, Neilson LJ, Cox J, Tang HR, Kalna G, van Ree JH, van Deursen JM, Trempus CS, Machesky LM, Linding R, Wickström SA, Fässler R, et al. In vivo SILAC-based proteomics reveals phosphoproteome changes during mouse skin carcinogenesis. Cell Reports. 3: 552-66. PMID 23375375 DOI: 10.1016/J.Celrep.2013.01.003 |
0.345 |
|
2012 |
Creixell P, Schoof EM, Erler JT, Linding R. Navigating cancer network attractors for tumor-specific therapy. Nature Biotechnology. 30: 842-8. PMID 22965061 DOI: 10.1038/Nbt.2345 |
0.313 |
|
2012 |
Creixell P, Linding R. Cells, shared memory and breaking the PTM code. Molecular Systems Biology. 8: 598. PMID 22866336 DOI: 10.1038/Msb.2012.33 |
0.447 |
|
2012 |
Erler JT, Linding R. Network medicine strikes a blow against breast cancer. Cell. 149: 731-3. PMID 22579276 DOI: 10.1016/J.Cell.2012.04.014 |
0.312 |
|
2010 |
Tan CS, Jørgensen C, Linding R. Roles of “junk phosphorylation” in modulating biomolecular association of phosphorylated proteins? Cell Cycle (Georgetown, Tex.). 9: 1276-80. PMID 20234177 DOI: 10.4161/Cc.9.7.11066 |
0.522 |
|
2010 |
van Vugt MA, Gardino AK, Linding R, Ostheimer GJ, Reinhardt HC, Ong SE, Tan CS, Miao H, Keezer SM, Li J, Pawson T, Lewis TA, Carr SA, Smerdon SJ, Brummelkamp TR, et al. A mitotic phosphorylation feedback network connects Cdk1, Plk1, 53BP1, and Chk2 to inactivate the G(2)/M DNA damage checkpoint. Plos Biology. 8: e1000287. PMID 20126263 DOI: 10.1371/Journal.Pbio.1000287 |
0.352 |
|
2010 |
Jørgensen C, Linding R. Simplistic pathways or complex networks? Current Opinion in Genetics & Development. 20: 15-22. PMID 20096559 DOI: 10.1016/J.Gde.2009.12.003 |
0.346 |
|
2010 |
Erler JT, Linding R. Network-based drugs and biomarkers. The Journal of Pathology. 220: 290-6. PMID 19921715 DOI: 10.1002/Path.2646 |
0.315 |
|
2010 |
Gould CM, Diella F, Via A, Puntervoll P, Gemünd C, Chabanis-Davidson S, Michael S, Sayadi A, Bryne JC, Chica C, Seiler M, Davey NE, Haslam N, Weatheritt RJ, Budd A, ... ... Linding R, et al. ELM: the status of the 2010 eukaryotic linear motif resource. Nucleic Acids Research. 38: D167-80. PMID 19920119 DOI: 10.1093/Nar/Gkp1016 |
0.661 |
|
2009 |
Jørgensen C, Sherman A, Chen GI, Pasculescu A, Poliakov A, Hsiung M, Larsen B, Wilkinson DG, Linding R, Pawson T. Cell-specific information processing in segregating populations of Eph receptor ephrin-expressing cells. Science (New York, N.Y.). 326: 1502-9. PMID 20007894 DOI: 10.1126/Science.1176615 |
0.319 |
|
2009 |
Tan CS, Linding R. Experimental and computational tools useful for (re)construction of dynamic kinase-substrate networks. Proteomics. 9: 5233-42. PMID 19834900 DOI: 10.1002/Pmic.200900266 |
0.417 |
|
2009 |
Van Hoof D, Muñoz J, Braam SR, Pinkse MW, Linding R, Heck AJ, Mummery CL, Krijgsveld J. Phosphorylation dynamics during early differentiation of human embryonic stem cells. Cell Stem Cell. 5: 214-26. PMID 19664995 DOI: 10.1016/J.Stem.2009.05.021 |
0.433 |
|
2009 |
Tan CS, Bodenmiller B, Pasculescu A, Jovanovic M, Hengartner MO, Jørgensen C, Bader GD, Aebersold R, Pawson T, Linding R. Comparative analysis reveals conserved protein phosphorylation networks implicated in multiple diseases. Science Signaling. 2: ra39. PMID 19638616 DOI: 10.1126/Scisignal.2000316 |
0.479 |
|
2009 |
Tan CS, Pasculescu A, Lim WA, Pawson T, Bader GD, Linding R. Positive selection of tyrosine loss in metazoan evolution. Science (New York, N.Y.). 325: 1686-8. PMID 19589966 DOI: 10.1126/Science.1174301 |
0.323 |
|
2009 |
Wang K, Alvarez MJ, Bisikirska BC, Linding R, Basso K, Dalla Favera R, Califano A. Dissecting the interface between signaling and transcriptional regulation in human B cells. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 264-75. PMID 19209707 |
0.319 |
|
2009 |
Taylor IW, Linding R, Warde-Farley D, Liu Y, Pesquita C, Faria D, Bull S, Pawson T, Morris Q, Wrana JL. Dynamic modularity in protein interaction networks predicts breast cancer outcome. Nature Biotechnology. 27: 199-204. PMID 19182785 DOI: 10.1038/Nbt.1522 |
0.406 |
|
2008 |
Bakal C, Linding R, Llense F, Heffern E, Martin-Blanco E, Pawson T, Perrimon N. Phosphorylation networks regulating JNK activity in diverse genetic backgrounds. Science (New York, N.Y.). 322: 453-6. PMID 18927396 DOI: 10.1126/Science.1158739 |
0.352 |
|
2008 |
Miller ML, Jensen LJ, Diella F, Jørgensen C, Tinti M, Li L, Hsiung M, Parker SA, Bordeaux J, Sicheritz-Ponten T, Olhovsky M, Pasculescu A, Alexander J, Knapp S, Blom N, ... ... Linding R, et al. Linear motif atlas for phosphorylation-dependent signaling. Science Signaling. 1: ra2. PMID 18765831 DOI: 10.1126/Scisignal.1159433 |
0.458 |
|
2008 |
Jørgensen C, Linding R. Directional and quantitative phosphorylation networks. Briefings in Functional Genomics & Proteomics. 7: 17-26. PMID 18270216 DOI: 10.1093/Bfgp/Eln001 |
0.468 |
|
2008 |
Linding R, Jensen LJ, Pasculescu A, Olhovsky M, Colwill K, Bork P, Yaffe MB, Pawson T. NetworKIN: a resource for exploring cellular phosphorylation networks. Nucleic Acids Research. 36: D695-9. PMID 17981841 DOI: 10.1093/Nar/Gkm902 |
0.441 |
|
2008 |
So J, Elder K, Dai A, Jorgensen C, Linding R, Colwill K, Pawson T. THE DYNACTOME: INVESTIGATING DYNAMIC KINASE NETWORKS IN CELLULAR DECISION-MAKING Clinical & Investigative Medicine. 31: 22. DOI: 10.25011/Cim.V31I4.4827 |
0.399 |
|
2007 |
Linding R, Jensen LJ, Ostheimer GJ, van Vugt MA, Jørgensen C, Miron IM, Diella F, Colwill K, Taylor L, Elder K, Metalnikov P, Nguyen V, Pasculescu A, Jin J, Park JG, et al. Systematic discovery of in vivo phosphorylation networks. Cell. 129: 1415-26. PMID 17570479 DOI: 10.1016/J.Cell.2007.05.052 |
0.426 |
|
2007 |
So J, Elder K, Colwill K, Linding R, Pawson T. The Dynactome-investigating dynamic network motifs of kinasess Clinical & Investigative Medicine. 30: 95. DOI: 10.25011/Cim.V30I4.2874 |
0.391 |
|
2005 |
Neduva V, Linding R, Su-Angrand I, Stark A, de Masi F, Gibson TJ, Lewis J, Serrano L, Russell RB. Systematic discovery of new recognition peptides mediating protein interaction networks. Plos Biology. 3: e405. PMID 16279839 DOI: 10.1371/Journal.Pbio.0030405 |
0.627 |
|
2005 |
Ingham RJ, Colwill K, Howard C, Dettwiler S, Lim CS, Yu J, Hersi K, Raaijmakers J, Gish G, Mbamalu G, Taylor L, Yeung B, Vassilovski G, Amin M, Chen F, ... ... Linding R, et al. WW domains provide a platform for the assembly of multiprotein networks. Molecular and Cellular Biology. 25: 7092-106. PMID 16055720 DOI: 10.1128/Mcb.25.16.7092-7106.2005 |
0.447 |
|
2004 |
Linding R, Schymkowitz J, Rousseau F, Diella F, Serrano L. A comparative study of the relationship between protein structure and beta-aggregation in globular and intrinsically disordered proteins. Journal of Molecular Biology. 342: 345-53. PMID 15313629 DOI: 10.1016/J.Jmb.2004.06.088 |
0.397 |
|
2004 |
Diella F, Cameron S, Gemünd C, Linding R, Via A, Kuster B, Sicheritz-Pontén T, Blom N, Gibson TJ. Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins. Bmc Bioinformatics. 5: 79. PMID 15212693 DOI: 10.1186/1471-2105-5-79 |
0.634 |
|
2003 |
Linding R, Jensen LJ, Diella F, Bork P, Gibson TJ, Russell RB. Protein disorder prediction: implications for structural proteomics. Structure (London, England : 1993). 11: 1453-9. PMID 14604535 DOI: 10.1016/J.Str.2003.10.002 |
0.628 |
|
2003 |
Bimpikis K, Budd A, Linding R, Gibson TJ. BLAST2SRS, a web server for flexible retrieval of related protein sequences in the SWISS-PROT and SPTrEMBL databases. Nucleic Acids Research. 31: 3792-4. PMID 12824420 DOI: 10.1093/Nar/Gkg535 |
0.65 |
|
2003 |
Linding R, Russell RB, Neduva V, Gibson TJ. GlobPlot: Exploring protein sequences for globularity and disorder. Nucleic Acids Research. 31: 3701-8. PMID 12824398 DOI: 10.1093/Nar/Gkg519 |
0.652 |
|
2003 |
Puntervoll P, Linding R, Gemünd C, Chabanis-Davidson S, Mattingsdal M, Cameron S, Martin DM, Ausiello G, Brannetti B, Costantini A, Ferrè F, Maselli V, Via A, Cesareni G, Diella F, et al. ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins. Nucleic Acids Research. 31: 3625-30. PMID 12824381 DOI: 10.1093/Nar/Gkg545 |
0.651 |
|
2002 |
Aasland R, Abrams C, Ampe C, Ball LJ, Bedford MT, Cesareni G, Gimona M, Hurley JH, Jarchau T, Lehto VP, Lemmon MA, Linding R, Mayer BJ, Nagai M, Sudol M, et al. Normalization of nomenclature for peptide motifs as ligands of modular protein domains. Febs Letters. 513: 141-4. PMID 11911894 DOI: 10.1016/S0014-5793(01)03295-1 |
0.453 |
|
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