Mats Ljungman - Publications

Affiliations: 
University of Michigan, Ann Arbor, Ann Arbor, MI 
Area:
Cell Biology, Molecular Biology

55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 van den Heuvel D, Spruijt CG, González-Prieto R, Kragten A, Paulsen MT, Zhou D, Wu H, Apelt K, van der Weegen Y, Yang K, Dijk M, Daxinger L, Marteijn JA, Vertegaal ACO, Ljungman M, et al. A CSB-PAF1C axis restores processive transcription elongation after DNA damage repair. Nature Communications. 12: 1342. PMID 33637760 DOI: 10.1038/s41467-021-21520-w  0.56
2020 Wu X, Niculite CM, Preda MB, Rossi A, Tebaldi T, Butoi E, White MK, Tudoran OM, Petrusca DN, Jannasch AS, Bone WP, Zong X, Fang F, Burlacu A, Paulsen MT, ... ... Ljungman M, et al. Publisher Correction: Regulation of cellular sterol homeostasis by the oxygen responsive noncoding RNA lincNORS. Nature Communications. 11: 5737. PMID 33159065 DOI: 10.1038/s41467-020-19708-7  0.56
2020 Wu X, Niculite CM, Preda MB, Rossi A, Tebaldi T, Butoi E, White MK, Tudoran OM, Petrusca DN, Jannasch AS, Bone WP, Zong X, Fang F, Burlacu A, Paulsen MT, ... ... Ljungman M, et al. Regulation of cellular sterol homeostasis by the oxygen responsive noncoding RNA lincNORS. Nature Communications. 11: 4755. PMID 32958772 DOI: 10.1038/S41467-020-18411-X  0.56
2020 Wolfe MB, Schagat TL, Paulsen MT, Magnuson B, Ljungman M, Park D, Zhang C, Campbell ZT, Goldstrohm AC, Freddolino PL. Principles of mRNA control by human PUM proteins elucidated from multi-modal experiments and integrative data analysis. Rna (New York, N.Y.). PMID 32753408 DOI: 10.1261/Rna.077362.120  0.56
2020 Chen W, Hu S, Mao S, Xu Y, Guo H, Li H, Paulsen MT, Chen X, Ljungman M, Neamati N. Discovery of Potential Mitochondrial Transcription Inhibitors as Anticancer Agents by Transcriptomic Profiling. Chemmedchem. PMID 32748543 DOI: 10.1002/Cmdc.202000494  0.56
2020 Bedi K, Paulsen MT, Wilson TE, Ljungman M. Characterization of novel primary miRNA transcription units in human cells using Bru-seq nascent RNA sequencing. Nar Genomics and Bioinformatics. 2: lqz014. PMID 31709421 DOI: 10.1093/nargab/lqz014  0.56
2018 Sima J, Chakraborty A, Dileep V, Michalski M, Klein KN, Holcomb NP, Turner JL, Paulsen MT, Rivera-Mulia JC, Trevilla-Garcia C, Bartlett DA, Zhao PA, Washburn BK, Nora EP, Kraft K, ... ... Ljungman M, et al. Identifying cis Elements for Spatiotemporal Control of Mammalian DNA Replication. Cell. PMID 30595451 DOI: 10.1016/J.Cell.2018.11.036  0.56
2018 Tank EM, Figueroa-Romero C, Hinder LM, Bedi K, Archbold HC, Li X, Weskamp K, Safren N, Paez-Colasante X, Pacut C, Thumma S, Paulsen MT, Guo K, Hur J, Ljungman M, et al. Abnormal RNA stability in amyotrophic lateral sclerosis. Nature Communications. 9: 2845. PMID 30030424 DOI: 10.1038/S41467-018-05049-Z  0.56
2018 Zhang Y, Pitchiaya S, Cieślik M, Niknafs YS, Tien JC, Hosono Y, Iyer MK, Yazdani S, Subramaniam S, Shukla SK, Jiang X, Wang L, Liu TY, Uhl M, Gawronski AR, ... ... Ljungman M, et al. Analysis of the androgen receptor-regulated lncRNA landscape identifies a role for ARLNC1 in prostate cancer progression. Nature Genetics. PMID 29808028 DOI: 10.1038/S41588-018-0120-1  0.56
2017 Venkata Narayanan I, Paulsen MT, Bedi K, Berg N, Ljungman EA, Francia S, Veloso A, Magnuson B, di Fagagna FD, Wilson TE, Ljungman M. Transcriptional and post-transcriptional regulation of the ionizing radiation response by ATM and p53. Scientific Reports. 7: 43598. PMID 28256581 DOI: 10.1038/Srep43598  0.56
2017 Kirkconnell KS, Magnuson B, Paulsen MT, Lu B, Bedi K, Ljungman M. Gene length as a biological timer to establish temporal transcriptional regulation. Cell Cycle (Georgetown, Tex.). 0. PMID 28055303 DOI: 10.1080/15384101.2016.1234550  0.56
2016 Ramkumar K, Samanta S, Kyani A, Yang S, Tamura S, Ziemke E, Stuckey JA, Li S, Chinnaswamy K, Otake H, Debnath B, Yarovenko V, Sebolt-Leopold JS, Ljungman M, Neamati N. Mechanistic evaluation and transcriptional signature of a glutathione S-transferase omega 1 inhibitor. Nature Communications. 7: 13084. PMID 27703239 DOI: 10.1038/Ncomms13084  0.56
2016 Kirkconnell KS, Paulsen MT, Magnuson B, Bedi K, Ljungman M. Capturing the dynamic nascent transcriptome during acute cellular responses: The serum response. Biology Open. PMID 27230646 DOI: 10.1242/Bio.019323  0.56
2015 Magnuson B, Veloso A, Kirkconnell KS, Lima LC, Paulsen MT, Ljungman EA, Bedi K, Prasad J, Wilson TE, Ljungman M. Identifying transcription start sites and active enhancer elements using BruUV-seq. Scientific Reports. 5: 17978. PMID 26656874 DOI: 10.1038/Srep17978  0.56
2015 Palmbos PL, Wang L, Yang H, Wang Y, Leflein J, Ahmet ML, Wilkinson JE, Kumar-Sinha C, Ney G, Tomlins SA, Daignault SD, Kunju LP, Wu XR, Lotan Y, Liebert M, ... Ljungman M, et al. ATDC (TRIM29) Drives Invasive Bladder Cancer Formation. Cancer Research. PMID 26471361 DOI: 10.1158/0008-5472.Can-15-0603  0.56
2015 Yang H, Palmbos PL, Wang L, Kim EH, Ney GM, Liu C, Prasad J, Misek DE, Yu X, Ljungman M, Simeone DM. ATDC (Ataxia Telangectasia Group D Complementing) Promotes Radioresistance Through an Interaction with the RNF8 Ubiquitin Ligase. The Journal of Biological Chemistry. PMID 26381412 DOI: 10.1074/Jbc.M115.665489  0.56
2015 Selvanathan SP, Graham GT, Erkizan HV, Dirksen U, Natarajan TG, Dakic A, Yu S, Liu X, Paulsen MT, Ljungman ME, Wu CH, Lawlor ER, Üren A, Toretsky JA. Oncogenic fusion protein EWS-FLI1 is a network hub that regulates alternative splicing. Proceedings of the National Academy of Sciences of the United States of America. 112: E1307-16. PMID 25737553 DOI: 10.1073/Pnas.1500536112  0.56
2015 Andrade-Lima LC, Veloso A, Paulsen MT, Menck CF, Ljungman M. DNA repair and recovery of RNA synthesis following exposure to ultraviolet light are delayed in long genes. Nucleic Acids Research. 43: 2744-56. PMID 25722371 DOI: 10.1093/Nar/Gkv148  0.56
2015 Kocab AJ, Veloso A, Paulsen MT, Ljungman M, Duckett CS. Effects of physiological and synthetic IAP antagonism on c-IAP-dependent signaling. Oncogene. 34: 5472-81. PMID 25659587 DOI: 10.1038/Onc.2015.3  0.56
2015 Buchner DA, Charrier A, Srinivasan E, Wang L, Paulsen MT, Ljungman M, Bridges D, Saltiel AR. Zinc finger protein 407 (ZFP407) regulates insulin-stimulated glucose uptake and glucose transporter 4 (Glut4) mRNA. The Journal of Biological Chemistry. 290: 6376-86. PMID 25596527 DOI: 10.1074/Jbc.M114.623736  0.56
2015 Wang L, Yang H, Abel EV, Ney GM, Palmbos PL, Bednar F, Zhang Y, Leflein J, Waghray M, Owens S, Wilkinson JE, Prasad J, Ljungman M, Rhim AD, Pasca di Magliano M, et al. ATDC induces an invasive switch in KRAS-induced pancreatic tumorigenesis. Genes & Development. 29: 171-83. PMID 25593307 DOI: 10.1101/Gad.253591.114  0.56
2015 Wilson TE, Arlt MF, Park SH, Rajendran S, Paulsen M, Ljungman M, Glover TW. Large transcription units unify copy number variants and common fragile sites arising under replication stress. Genome Research. 25: 189-200. PMID 25373142 DOI: 10.1101/Gr.177121.114  0.56
2014 Svoboda LK, Harris A, Bailey NJ, Schwentner R, Tomazou E, von Levetzow C, Magnuson B, Ljungman M, Kovar H, Lawlor ER. Overexpression of HOX genes is prevalent in Ewing sarcoma and is associated with altered epigenetic regulation of developmental transcription programs. Epigenetics : Official Journal of the Dna Methylation Society. 9: 1613-25. PMID 25625846 DOI: 10.4161/15592294.2014.988048  0.56
2014 Prensner JR, Chen W, Han S, Iyer MK, Cao Q, Kothari V, Evans JR, Knudsen KE, Paulsen MT, Ljungman M, Lawrence TS, Chinnaiyan AM, Feng FY. The long non-coding RNA PCAT-1 promotes prostate cancer cell proliferation through cMyc. Neoplasia (New York, N.Y.). 16: 900-8. PMID 25425964 DOI: 10.1016/J.Neo.2014.09.001  0.56
2014 Veloso A, Kirkconnell KS, Magnuson B, Biewen B, Paulsen MT, Wilson TE, Ljungman M. Rate of elongation by RNA polymerase II is associated with specific gene features and epigenetic modifications. Genome Research. 24: 896-905. PMID 24714810 DOI: 10.1101/gr.171405.113  0.56
2014 Wang L, Yang H, Palmbos PL, Ney G, Detzler TA, Coleman D, Leflein J, Davis M, Zhang M, Tang W, Hicks JK, Helchowski CM, Prasad J, Lawrence TS, Xu L, ... ... Ljungman M, et al. ATDC/TRIM29 phosphorylation by ATM/MAPKAP kinase 2 mediates radioresistance in pancreatic cancer cells. Cancer Research. 74: 1778-88. PMID 24469230 DOI: 10.1158/0008-5472.Can-13-2289  0.56
2014 Paulsen MT, Veloso A, Prasad J, Bedi K, Ljungman EA, Magnuson B, Wilson TE, Ljungman M. Use of Bru-Seq and BruChase-Seq for genome-wide assessment of the synthesis and stability of RNA. Methods (San Diego, Calif.). 67: 45-54. PMID 23973811 DOI: 10.1016/j.ymeth.2013.08.015  0.56
2013 Veloso A, Biewen B, Paulsen MT, Berg N, Carmo de Andrade Lima L, Prasad J, Bedi K, Magnuson B, Wilson TE, Ljungman M. Genome-wide transcriptional effects of the anti-cancer agent camptothecin. Plos One. 8: e78190. PMID 24194914 DOI: 10.1371/Journal.Pone.0078190  0.56
2013 Ray D, Shukla S, Allam US, Helman A, Ramanand SG, Tran L, Bassetti M, Krishnamurthy PM, Rumschlag M, Paulsen M, Sun L, Shanley TP, Ljungman M, Nyati MK, Zhang M, et al. Tristetraprolin mediates radiation-induced TNF-α production in lung macrophages. Plos One. 8: e57290. PMID 23468959 DOI: 10.1371/Journal.Pone.0057290  0.56
2013 Wilson TE, DeMarini DM, Dertinger SD, Engelward BP, Hanawalt PC, MacGregor JT, Smith-Roe SL, Witt KL, Yauk CL, Ljungman M, Schwartz JL, Klein CB. Building on the past, shaping the future: the Environmental Mutagenesis and Genomics Society. Environmental and Molecular Mutagenesis. 54: 153-7. PMID 23444128 DOI: 10.1002/Em.21765  0.56
2013 Paulsen MT, Veloso A, Prasad J, Bedi K, Ljungman EA, Tsan YC, Chang CW, Tarrier B, Washburn JG, Lyons R, Robinson DR, Kumar-Sinha C, Wilson TE, Ljungman M. Coordinated regulation of synthesis and stability of RNA during the acute TNF-induced proinflammatory response. Proceedings of the National Academy of Sciences of the United States of America. 110: 2240-5. PMID 23345452 DOI: 10.1073/Pnas.1219192110  0.56
2011 Wu J, Chen Y, Lu LY, Wu Y, Paulsen MT, Ljungman M, Ferguson DO, Yu X. Chfr and RNF8 synergistically regulate ATM activation. Nature Structural & Molecular Biology. 18: 761-8. PMID 21706008 DOI: 10.1038/Nsmb.2078  0.56
2010 Hall CL, Zhang H, Baile S, Ljungman M, Kuhstoss S, Keller ET. p21CIP-1/WAF-1 induction is required to inhibit prostate cancer growth elicited by deficient expression of the Wnt inhibitor Dickkopf-1. Cancer Research. 70: 9916-26. PMID 21098705 DOI: 10.1158/0008-5472.Can-10-0440  0.56
2009 Derheimer FA, Hicks JK, Paulsen MT, Canman CE, Ljungman M. Psoralen-lnduced DNA interstrand cross-links block transcription and induce p53 in an ataxia-telangiectasia and rad3-related-dependent manner Molecular Pharmacology. 75: 599-607. PMID 19064630 DOI: 10.1124/Mol.108.051698  0.56
2009 Wu J, Huen MS, Lu LY, Ye L, Dou Y, Ljungman M, Chen J, Yu X. Histone ubiquitination associates with BRCA1-dependent DNA damage response. Molecular and Cellular Biology. 29: 849-60. PMID 19015238 DOI: 10.1128/Mcb.01302-08  0.56
2008 Burkitt K, Ljungman M. Phenylbutyrate interferes with the Fanconi anemia and BRCA pathway and sensitizes head and neck cancer cells to cisplatin. Molecular Cancer. 7: 24. PMID 18325101 DOI: 10.1186/1476-4598-7-24  0.56
2007 Derheimer FA, O'Hagan HM, Krueger HM, Hanasoge S, Paulsen MT, Ljungman M. RPA and ATR link transcriptional stress to p53. Proceedings of the National Academy of Sciences of the United States of America. 104: 12778-83. PMID 17616578 DOI: 10.1073/Pnas.0705317104  0.56
2007 Hanasoge S, Ljungman M. H2AX phosphorylation after UV irradiation is triggered by DNA repair intermediates and is mediated by the ATR kinase. Carcinogenesis. 28: 2298-304. PMID 17615256 DOI: 10.1093/Carcin/Bgm157  0.56
2007 Burkitt K, Ljungman M. Compromised Fanconi anemia response due to BRCA1 deficiency in cisplatin-sensitive head and neck cancer cell lines. Cancer Letters. 253: 131-7. PMID 17321670 DOI: 10.1016/J.Canlet.2007.01.017  0.56
2006 Nyati MK, Feng FY, Maheshwari D, Varambally S, Zielske SP, Ahsan A, Chun PY, Arora VA, Davis MA, Jung M, Ljungman M, Canman CE, Chinnaiyan AM, Lawrence TS. Ataxia telangiectasia mutated down-regulates phospho-extracellular signal-regulated kinase 1/2 via activation of MKP-1 in response to radiation. Cancer Research. 66: 11554-9. PMID 17178844 DOI: 10.1158/0008-5472.Can-06-1935  0.56
2006 Paulsen MT, Starks AM, Derheimer FA, Hanasoge S, Li L, Dixon JE, Ljungman M. The p53-targeting human phosphatase hCdc14A interacts with the Cdk1/cyclin B complex and is differentially expressed in human cancers. Molecular Cancer. 5: 25. PMID 16784539 DOI: 10.1186/1476-4598-5-25  0.56
2005 Paulsen MT, Ljungman M. The natural toxin juglone causes degradation of p53 and induces rapid H2AX phosphorylation and cell death in human fibroblasts. Toxicology and Applied Pharmacology. 209: 1-9. PMID 16271620 DOI: 10.1016/j.taap.2005.03.005  0.56
2005 Derheimer FA, Chang CW, Ljungman M. Transcription inhibition: a potential strategy for cancer therapeutics. European Journal of Cancer (Oxford, England : 1990). 41: 2569-76. PMID 16213135 DOI: 10.1016/J.Ejca.2005.08.012  0.6
2004 O'Hagan HM, Ljungman M. Efficient NES-dependent protein nuclear export requires ongoing synthesis and export of mRNAs. Experimental Cell Research. 297: 548-59. PMID 15212955 DOI: 10.1016/J.Yexcr.2004.03.051  0.8
2004 Murphy PJ, Galigniana MD, Morishima Y, Harrell JM, Kwok RP, Ljungman M, Pratt WB. Pifithrin-alpha inhibits p53 signaling after interaction of the tumor suppressor protein with hsp90 and its nuclear translocation. The Journal of Biological Chemistry. 279: 30195-201. PMID 15145929 DOI: 10.1074/Jbc.M403539200  0.56
2004 O'Hagan HM, Ljungman M. Nuclear accumulation of p53 following inhibition of transcription is not due to diminished levels of MDM2. Oncogene. 23: 5505-12. PMID 15094782 DOI: 10.1038/Sj.Onc.1207709  0.8
2004 Galigniana MD, Harrell JM, O'Hagen HM, Ljungman M, Pratt WB. Hsp90-binding immunophilins link p53 to dynein during p53 transport to the nucleus. The Journal of Biological Chemistry. 279: 22483-9. PMID 15004035 DOI: 10.1074/Jbc.M402223200  0.56
2004 O'Hagan HM, Ljungman M. Phosphorylation and nuclear accumulation are distinct events contributing to the activation of p53. Mutation Research. 546: 7-15. PMID 14757188 DOI: 10.1016/J.Mrfmmm.2003.10.003  0.8
2002 Dyer ES, Paulsen MT, Markwart SM, Goh M, Livant DL, Ljungman M. Phenylbutyrate inhibits the invasive properties of prostate and breast cancer cell lines in the sea urchin embryo basement membrane invasion assay. International Journal of Cancer. Journal International Du Cancer. 101: 496-9. PMID 12216080 DOI: 10.1002/Ijc.10609  0.56
2001 Ljungman M, O'Hagan HM, Paulsen MT. Induction of ser15 and lys382 modifications of p53 by blockage of transcription elongation. Oncogene. 20: 5964-71. PMID 11593403 DOI: 10.1038/Sj.Onc.1204734  0.8
2001 Goh M, Chen F, Paulsen MT, Yeager AM, Dyer ES, Ljungman M. Phenylbutyrate attenuates the expression of Bcl-X(L), DNA-PK, caveolin-1, and VEGF in prostate cancer cells. Neoplasia (New York, N.Y.). 3: 331-8. PMID 11571633 DOI: 10.1038/Sj.Neo.7900165  0.56
2001 Klibanov SA, O'Hagan HM, Ljungman M. Accumulation of soluble and nucleolar-associated p53 proteins following cellular stress. Journal of Cell Science. 114: 1867-73. PMID 11329373  0.8
2000 Li L, Ljungman M, Dixon JE. The human Cdc14 phosphatases interact with and dephosphorylate the tumor suppressor protein p53 Journal of Biological Chemistry. 275: 2410-2414. PMID 10644693 DOI: 10.1074/Jbc.275.4.2410  0.56
1996 Ljungman M, Hanawalt PC. The anti-cancer drug camptothecin inhibits elongation but stimulates initiation of RNA polymerase II transcription. Carcinogenesis. 17: 31-5. PMID 8565133 DOI: 10.1093/Carcin/17.1.31  0.56
1995 Ljungman M, Hanawalt PC. Presence of negative torsional tension in the promoter region of the transcriptionally poised dihydrofolate reductase gene in vivo. Nucleic Acids Research. 23: 1782-9. PMID 7784183 DOI: 10.1093/Nar/23.10.1782  0.56
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