Chung-Jui Tsai - Publications

Michigan Technological University, USA 
Forestry and Wildlife Agriculture, Molecular Biology, Genetics

56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Harding SA, Frost CJ, Tsai CJ. Defoliation-induced compensatory transpiration is compromised in -RNAi . Plant Direct. 4: e00268. PMID 33015535 DOI: 10.1002/pld3.268  0.72
2020 Tsai CJ, Xu P, Xue LJ, Hu H, Nyamdari B, Naran R, Zhou X, Goeminne G, Gao R, Gjersing E, Dahlen J, Pattathil S, Hahn MG, Davis M, Ralph J, et al. Compensatory guaiacyl lignin biosynthesis at the expense of syringyl lignin in 4CL1-knockout poplar. Plant Physiology. PMID 32139476 DOI: 10.1104/Pp.19.01550  0.72
2019 Heyduk K, Ray JN, Ayyampalayam S, Moledina N, Borland A, Harding SA, Tsai CJ, Leebens-Mack J. Shared expression of Crassulacean acid metabolism (CAM) genes predates the origin of CAM in the genus Yucca. Journal of Experimental Botany. PMID 30870557 DOI: 10.1093/Jxb/Erz105  0.72
2018 Scully ED, Geib SM, Mason CJ, Carlson JE, Tien M, Chen HY, Harding S, Tsai CJ, Hoover K. Host-plant induced changes in microbial community structure and midgut gene expression in an invasive polyphage (Anoplophora glabripennis). Scientific Reports. 8: 9620. PMID 29942001 DOI: 10.1038/S41598-018-27476-0  0.68
2018 Tsai CJ, Harding SA, Cooke JEK. Branching out: a new era of investigating physiological processes in forest trees using genomic tools. Tree Physiology. PMID 29506180 DOI: 10.1093/Treephys/Tpy026  0.72
2017 Harding SA, Hu H, Nyamdari B, Xue LJ, Naran R, Tsai CJ. Tubulins, rhythms and cell walls in poplar leaves: it's all in the timing. Tree Physiology. 1-12. PMID 28927239 DOI: 10.1093/Treephys/Tpx104  0.72
2017 Chen J, Shen ZJ, Lu WZ, Liu X, Wu FH, Gao GF, Liu YL, Wu CS, Yan CL, Fan HQ, Zhang YH, Zheng HL, Tsai CJ. Leaf miner-induced morphological, physiological and molecular changes in mangrove plant Avicennia marina (Forsk.) Vierh. Tree Physiology. 37: 82-97. PMID 28173596 DOI: 10.1093/treephys/tpw097  0.68
2016 Hu H, Gu X, Xue LJ, Swamy PS, Harding SA, Tsai CJ. Tubulin C-terminal Post-translational Modifications Do Not Occur in Wood Forming Tissue of Populus. Frontiers in Plant Science. 7: 1493. PMID 27790223 DOI: 10.3389/Fpls.2016.01493  0.72
2016 Xue LJ, Frost CJ, Tsai CJ, Harding SA. Drought response transcriptomes are altered in poplar with reduced tonoplast sucrose transporter expression. Scientific Reports. 6: 33655. PMID 27641356 DOI: 10.1038/Srep33655  0.72
2016 Bowsher AW, Ali R, Harding SA, Tsai CJ, Donovan LA. Evolutionary Divergences in Root Exudate Composition among Ecologically-Contrasting Helianthus Species. Plos One. 11: e0148280. PMID 26824236 DOI: 10.1371/Journal.Pone.0148280  0.72
2016 Hu H, Gu X, Xue LJ, Swamy PS, Harding SA, Tsai CJ. Tubulin C-terminal post-translational modifications do not occur in wood forming tissue of populus Frontiers in Plant Science. 7. DOI: 10.3389/fpls.2016.01493  0.68
2015 Tsai CJ, Xue LJ. CRISPRing into the woods. Gm Crops & Food. 1-10. PMID 26357840 DOI: 10.1080/21645698.2015.1091553  0.48
2015 Swamy PS, Hu H, Pattathil S, Maloney VJ, Xiao H, Xue LJ, Chung JD, Johnson VE, Zhu Y, Peter GF, Hahn MG, Mansfield SD, Harding SA, Tsai CJ. Tubulin perturbation leads to unexpected cell wall modifications and affects stomatal behaviour in Populus. Journal of Experimental Botany. PMID 26246616 DOI: 10.1093/jxb/erv383  0.68
2015 Xue LJ, Tsai CJ. AGEseq: Analysis of Genome Editing by Sequencing. Molecular Plant. PMID 26057235 DOI: 10.1016/J.Molp.2015.06.001  0.48
2015 Zhou X, Jacobs TB, Xue LJ, Harding SA, Tsai CJ. Exploiting SNPs for biallelic CRISPR mutations in the outcrossing woody perennial Populus reveals 4-coumarate:CoA ligase specificity and redundancy. The New Phytologist. PMID 25970829 DOI: 10.1111/Nph.13470  0.72
2015 Xue LJ, Alabady MS, Mohebbi M, Tsai CJ. Exploiting genome variation to improve next-generation sequencing data analysis and genome editing efficiency in Populus tremula × alba 717-1B4 Tree Genetics and Genomes. 11. DOI: 10.1007/S11295-015-0907-5  0.68
2015 Bowsher AW, Ali R, Harding SA, Tsai CJ, Donovan LA. Analysis of wild sunflower (Helianthus annuus L.) root exudates using gas chromatography-mass spectrometry Journal of Plant Nutrition and Soil Science. DOI: 10.1002/Jpln.201400521  0.72
2014 Peng D, Gu X, Xue LJ, Leebens-Mack JH, Tsai CJ. Bayesian phylogeny of sucrose transporters: ancient origins, differential expansion and convergent evolution in monocots and dicots. Frontiers in Plant Science. 5: 615. PMID 25429293 DOI: 10.3389/Fpls.2014.00615  0.48
2014 Chen HY, Babst BA, Nyamdari B, Hu H, Sykes R, Davis MF, Harding SA, Tsai CJ. Ectopic expression of a loblolly pine class II 4-coumarate:CoA ligase alters soluble phenylpropanoid metabolism but not lignin biosynthesis in Populus. Plant & Cell Physiology. 55: 1669-78. PMID 25016610 DOI: 10.1093/Pcp/Pcu098  0.68
2014 Babst BA, Chen HY, Wang HQ, Payyavula RS, Thomas TP, Harding SA, Tsai CJ. Stress-responsive hydroxycinnamate glycosyltransferase modulates phenylpropanoid metabolism in Populus. Journal of Experimental Botany. 65: 4191-200. PMID 24803501 DOI: 10.1093/Jxb/Eru192  0.68
2014 Harding SA, Xue LJ, Du L, Nyamdari B, Lindroth RL, Sykes R, Davis MF, Tsai CJ. Condensed tannin biosynthesis and polymerization synergistically condition carbon use, defense, sink strength and growth in Populus. Tree Physiology. 34: 1240-51. PMID 24336515 DOI: 10.1093/Treephys/Tpt097  0.68
2013 Wang HQ, Tsai CJ. CorSig: a general framework for estimating statistical significance of correlation and its application to gene co-expression analysis. Plos One. 8: e77429. PMID 24194884 DOI: 10.1371/Journal.Pone.0077429  0.96
2013 Xu Y, Chen CF, Thomas TP, Azadi P, Diehl B, Tsai CJ, Brown N, Carlson JE, Tien M, Liang H. Wood chemistry analysis and expression profiling of a poplar clone expressing a tyrosine-rich peptide. Plant Cell Reports. 32: 1827-41. PMID 24013761 DOI: 10.1007/S00299-013-1496-0  0.68
2013 Xue LJ, Guo W, Yuan Y, Anino EO, Nyamdari B, Wilson MC, Frost CJ, Chen HY, Babst BA, Harding SA, Tsai CJ. Constitutively elevated salicylic acid levels alter photosynthesis and oxidative state but not growth in transgenic populus. The Plant Cell. 25: 2714-30. PMID 23903318 DOI: 10.1105/Tpc.113.112839  0.68
2013 Molina-Rueda JJ, Tsai CJ, Kirby EG. The Populus Superoxide Dismutase Gene Family and Its Responses to Drought Stress in Transgenic Poplar Overexpressing a Pine Cytosolic Glutamine Synthetase (GS1a) Plos One. 8. PMID 23451045 DOI: 10.1371/journal.pone.0056421  0.68
2013 Tsai CJ, Harding SA. In situ hybridization. Methods in Cell Biology. 113: 339-59. PMID 23317910 DOI: 10.1016/B978-0-12-407239-8.00016-1  0.72
2012 Barron MJ, Goldman J, Tsai CJ, Donahue SW. Perfusion flow enhances osteogenic gene expression and the infiltration of osteoblasts and endothelial cells into three-dimensional calcium phosphate scaffolds. International Journal of Biomaterials. 2012: 915620. PMID 22988460 DOI: 10.1155/2012/915620  0.68
2012 Frost CJ, Nyamdari B, Tsai CJ, Harding SA. The tonoplast-localized sucrose transporter in Populus (PtaSUT4) regulates whole-plant water relations, responses to water stress, and photosynthesis. Plos One. 7: e44467. PMID 22952983 DOI: 10.1371/Journal.Pone.0044467  0.68
2012 Gray SK, McGee-Lawrence ME, Sanders JL, Condon KW, Tsai CJ, Donahue SW. Black bear parathyroid hormone has greater anabolic effects on trabecular bone in dystrophin-deficient mice than in wild type mice Bone. 51: 578-585. PMID 22584007 DOI: 10.1016/J.Bone.2012.05.003  0.68
2011 Tuominen LK, Johnson VE, Tsai CJ. Differential phylogenetic expansions in BAHD acyltransferases across five angiosperm taxa and evidence of divergent expression among Populus paralogues. Bmc Genomics. 12: 236. PMID 21569431 DOI: 10.1186/1471-2164-12-236  0.68
2011 Payyavula RS, Tay KH, Tsai CJ, Harding SA. The sucrose transporter family in Populus: the importance of a tonoplast PtaSUT4 to biomass and carbon partitioning. The Plant Journal : For Cell and Molecular Biology. 65: 757-70. PMID 21261761 DOI: 10.1111/J.1365-313X.2010.04463.X  0.72
2011 Wang HQ, Tuominen LK, Tsai CJ. SLIM: a sliding linear model for estimating the proportion of true null hypotheses in datasets with dependence structures. Bioinformatics (Oxford, England). 27: 225-31. PMID 21098430 DOI: 10.1093/Bioinformatics/Btq650  0.96
2010 Wegrzyn JL, Eckert AJ, Choi M, Lee JM, Stanton BJ, Sykes R, Davis MF, Tsai CJ, Neale DB. Association genetics of traits controlling lignin and cellulose biosynthesis in black cottonwood (Populus trichocarpa, Salicaceae) secondary xylem. The New Phytologist. 188: 515-32. PMID 20831625 DOI: 10.1111/J.1469-8137.2010.03415.X  0.68
2010 Barron MJ, Tsai CJ, Donahue SW. Mechanical stimulation mediates gene expression in MC3T3 osteoblastic cells differently in 2D and 3D environments. Journal of Biomechanical Engineering. 132: 041005. PMID 20387968 DOI: 10.1115/1.4001162  0.68
2010 Gou J, Strauss SH, Tsai CJ, Fang K, Chen Y, Jiang X, Busov VB. Gibberellins regulate lateral root formation in Populus through interactions with auxin and other hormones. The Plant Cell. 22: 623-39. PMID 20354195 DOI: 10.1105/tpc.109.073239  0.68
2010 Babst BA, Harding SA, Tsai CJ. Biosynthesis of phenolic glycosides from phenylpropanoid and benzenoid precursors in populus. Journal of Chemical Ecology. 36: 286-97. PMID 20177744 DOI: 10.1007/S10886-010-9757-7  0.68
2009 Payyavula RS, Babst BA, Nelsen MP, Harding SA, Tsai CJ. Glycosylation-mediated phenylpropanoid partitioning in Populus tremuloides cell cultures. Bmc Plant Biology. 9: 151. PMID 20040108 DOI: 10.1186/1471-2229-9-151  0.68
2009 Yuan Y, Chung JD, Fu X, Johnson VE, Ranjan P, Booth SL, Harding SA, Tsai CJ. Alternative splicing and gene duplication differentially shaped the regulation of isochorismate synthase in Populus and Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 106: 22020-5. PMID 19996170 DOI: 10.1073/Pnas.0906869106  0.68
2009 Harding SA, Jarvie MM, Lindroth RL, Tsai CJ. A comparative analysis of phenylpropanoid metabolism, N utilization, and carbon partitioning in fast- and slow-growing Populus hybrid clones. Journal of Experimental Botany. 60: 3443-52. PMID 19516073 DOI: 10.1093/Jxb/Erp180  0.68
2009 Cseke LJ, Tsai CJ, Rogers A, Nelsen MP, White HL, Karnosky DF, Podila GK. Transcriptomic comparison in the leaves of two aspen genotypes having similar carbon assimilation rates but different partitioning patterns under elevated [CO2]. The New Phytologist. 182: 891-911. PMID 19383098 DOI: 10.1111/J.1469-8137.2009.02812.X  0.68
2008 Qin H, Feng T, Harding SA, Tsai CJ, Zhang S. An efficient method to identify differentially expressed genes in microarray experiments. Bioinformatics (Oxford, England). 24: 1583-9. PMID 18453554 DOI: 10.1093/Bioinformatics/Btn215  0.72
2008 Luo K, Harding SA, Tsai CJ. A modified T-vector for simplified assembly of hairpin RNAi constructs. Biotechnology Letters. 30: 1271-4. PMID 18317701 DOI: 10.1007/S10529-008-9673-X  0.72
2007 Oakley RV, Wang YS, Ramakrishna W, Harding SA, Tsai CJ. Differential expansion and expression of alpha- and beta-tubulin gene families in Populus. Plant Physiology. 145: 961-73. PMID 17885081 DOI: 10.1104/Pp.107.107086  0.72
2007 Lin J, Gunter LE, Harding SA, Kopp RF, McCord RP, Tsai CJ, Tuskan GA, Smart LB. Development of AFLP and RAPD markers linked to a locus associated with twisted growth in corkscrew willow (Salix matsudana 'Tortuosa'). Tree Physiology. 27: 1575-83. PMID 17669747 DOI: 10.1093/Treephys/27.11.1575  0.72
2007 Rajinikanth M, Harding SA, Tsai CJ. The glycine decarboxylase complex multienzyme family in Populus. Journal of Experimental Botany. 58: 1761-70. PMID 17355947 DOI: 10.1093/Jxb/Erm034  0.72
2006 Tsai CJ, Harding SA, Tschaplinski TJ, Lindroth RL, Yuan Y. Genome-wide analysis of the structural genes regulating defense phenylpropanoid metabolism in Populus. The New Phytologist. 172: 47-62. PMID 16945088 DOI: 10.1111/J.1469-8137.2006.01798.X  0.68
2005 Harding SA, Jiang H, Jeong ML, Casado FL, Lin HW, Tsai CJ. Functional genomics analysis of foliar condensed tannin and phenolic glycoside regulation in natural cottonwood hybrids. Tree Physiology. 25: 1475-86. PMID 16137933 DOI: 10.1093/Treephys/25.12.1475  0.72
2004 Jeong ML, Jiang H, Chen HS, Tsai CJ, Harding SA. Metabolic profiling of the sink-to-source transition in developing leaves of quaking aspen. Plant Physiology. 136: 3364-75. PMID 15448196 DOI: 10.1104/Pp.104.044776  0.72
2004 Jiang H, Deng Y, Chen HS, Tao L, Sha Q, Chen J, Tsai CJ, Zhang S. Joint analysis of two microarray gene-expression data sets to select lung adenocarcinoma marker genes. Bmc Bioinformatics. 5: 81. PMID 15217521 DOI: 10.1186/1471-2105-5-81  0.68
2004 Ranjan P, Kao YY, Jiang H, Joshi CP, Harding SA, Tsai CJ. Suppression subtractive hybridization-mediated transcriptome analysis from multiple tissues of aspen (Populus tremuloides) altered in phenylpropanoid metabolism. Planta. 219: 694-704. PMID 15146331 DOI: 10.1007/S00425-004-1291-9  0.72
2004 Wang YS, Harding SA, Tsai CJ. Expression of a glycine decarboxylase complex H-protein in non-photosynthetic tissues of Populus tremuloides. Biochimica Et Biophysica Acta. 1676: 266-72. PMID 14984933 DOI: 10.1016/J.Bbaexp.2003.12.004  0.72
2002 Kao YY, Harding SA, Tsai CJ. Differential expression of two distinct phenylalanine ammonia-lyase genes in condensed tannin-accumulating and lignifying cells of quaking aspen. Plant Physiology. 130: 796-807. PMID 12376645 DOI: 10.1104/Pp.006262  0.72
2002 Harding SA, Leshkevich J, Chiang VL, Tsai CJ. Differential substrate inhibition couples kinetically distinct 4-coumarate:coenzyme a ligases with spatially distinct metabolic roles in quaking aspen. Plant Physiology. 128: 428-38. PMID 11842147 DOI: 10.1104/Pp.010603  0.68
1999 Hu WJ, Harding SA, Lung J, Popko JL, Ralph J, Stokke DD, Tsai CJ, Chiang VL. Repression of lignin biosynthesis promotes cellulose accumulation and growth in transgenic trees. Nature Biotechnology. 17: 808-12. PMID 10429249 DOI: 10.1038/11758  0.68
1998 Hu WJ, Kawaoka A, Tsai CJ, Lung J, Osakabe K, Ebinuma H, Chiang VL. Compartmentalized expression of two structurally and functionally distinct 4-coumarate:CoA ligase genes in aspen (Populus tremuloides). Proceedings of the National Academy of Sciences of the United States of America. 95: 5407-12. PMID 9560289 DOI: 10.1073/Pnas.95.9.5407  0.68
1994 Tsai CJ, Podila GK, Chiang VL. Agrobacterium-mediated transformation of quaking aspen (Populus tremuloides) and regeneration of transgenic plants Plant Cell Reports. 14: 94-97. DOI: 10.1007/Bf00233768  0.68
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