Richard W. Michelmore - Publications

University of California, Davis, Davis, CA 
Genetics, Plant Pathology Agriculture, Molecular Biology

66 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Kozik A, Rowan BA, Lavelle D, Berke L, Schranz ME, Michelmore RW, Christensen AC. The alternative reality of plant mitochondrial DNA: One ring does not rule them all. Plos Genetics. 15: e1008373. PMID 31469821 DOI: 10.1371/journal.pgen.1008373  0.44
2019 Su W, Tao R, Liu W, Yu C, Yue Z, He S, Lavelle D, Zhang W, Zhang L, An G, Zhang Y, Hu Q, Larkin RM, Michelmore RW, Kuang H, et al. Characterization of four polymorphic genes controlling red leaf color in lettuce that have undergone disruptive selection since domestication. Plant Biotechnology Journal. PMID 31325407 DOI: 10.1111/pbi.13213  0.36
2018 Wróblewski T, Spiridon L, Martin EC, Petrescu AJ, Cavanaugh K, Truco MJ, Xu H, Gozdowski D, Pawłowski K, Michelmore RW, Takken FLW. Genome-wide functional analyses of plant coiled-coil NLR-type pathogen receptors reveal essential roles of their N-terminal domain in oligomerization, networking, and immunity. Plos Biology. 16: e2005821. PMID 30540748 DOI: 10.1371/journal.pbio.2005821  0.36
2017 Zhang L, Su W, Tao R, Zhang W, Chen J, Wu P, Yan C, Jia Y, Larkin RM, Lavelle D, Truco MJ, Chin-Wo SR, Michelmore RW, Kuang H. RNA sequencing provides insights into the evolution of lettuce and the regulation of flavonoid biosynthesis. Nature Communications. 8: 2264. PMID 29273740 DOI: 10.1038/s41467-017-02445-9  0.36
2017 Reyes-Chin-Wo S, Wang Z, Yang X, Kozik A, Arikit S, Song C, Xia L, Froenicke L, Lavelle DO, Truco MJ, Xia R, Zhu S, Xu C, Xu H, Xu X, ... ... Michelmore RW, et al. Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce. Nature Communications. 8: 14953. PMID 28401891 DOI: 10.1038/ncomms14953  0.72
2015 Yoong FY, O'Brien LK, Truco MJ, Huo H, Sideman R, Hayes R, Michelmore RW, Bradford KJ. Genetic variation for lettuce seed germination thermotolerance is associated with temperature-sensitive regulation of ETHYLENE RESPONSE FACTOR1 (ERF1). Plant Physiology. PMID 26574598 DOI: 10.1104/pp.15.01251  0.44
2015 Christopoulou M, Wo SR, Kozik A, McHale LK, Truco MJ, Wroblewski T, Michelmore RW. Genome-Wide Architecture of Disease Resistance Genes in Lettuce. G3 (Bethesda, Md.). 5: 2655-69. PMID 26449254 DOI: 10.1534/g3.115.020818  0.44
2015 Simko I, Ochoa OE, Pel MA, Tsuchida C, Font I Forcada C, Hayes RJ, Truco MJ, Antonise R, Galeano CH, Michelmore RW. Resistance to Downy Mildew in Lettuce 'La Brillante' is Conferred by Dm50 Gene and Multiple QTL. Phytopathology. 105: 1220-8. PMID 25915441 DOI: 10.1094/PHYTO-02-15-0057-R  0.44
2015 Christopoulou M, McHale LK, Kozik A, Reyes-Chin Wo S, Wroblewski T, Michelmore RW. Dissection of Two Complex Clusters of Resistance Genes in Lettuce (Lactuca sativa). Molecular Plant-Microbe Interactions : Mpmi. 28: 751-65. PMID 25650829 DOI: 10.1094/MPMI-06-14-0175-R  0.44
2015 Govindarajulu M, Epstein L, Wroblewski T, Michelmore RW. Host-induced gene silencing inhibits the biotrophic pathogen causing downy mildew of lettuce. Plant Biotechnology Journal. 13: 875-83. PMID 25487781 DOI: 10.1111/pbi.12307  0.44
2014 Wroblewski T, Matvienko M, Piskurewicz U, Xu H, Martineau B, Wong J, Govindarajulu M, Kozik A, Michelmore RW. Distinctive profiles of small RNA couple inverted repeat-induced post-transcriptional gene silencing with endogenous RNA silencing pathways in Arabidopsis. Rna (New York, N.Y.). 20: 1987-99. PMID 25344399 DOI: 10.1261/rna.046532.114  0.44
2014 Mandel JR, Dikow RB, Funk VA, Masalia RR, Staton SE, Kozik A, Michelmore RW, Rieseberg LH, Burke JM. A target enrichment method for gathering phylogenetic information from hundreds of loci: An example from the Compositae. Applications in Plant Sciences. 2. PMID 25202605 DOI: 10.3732/apps.1300085  0.44
2014 Beitel CW, Froenicke L, Lang JM, Korf IF, Michelmore RW, Eisen JA, Darling AE. Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing proximity ligation products. Peerj. 2: e415. PMID 24918035 DOI: 10.7717/peerj.415  0.44
2014 Hodgins KA, Lai Z, Oliveira LO, Still DW, Scascitelli M, Barker MS, Kane NC, Dempewolf H, Kozik A, Kesseli RV, Burke JM, Michelmore RW, Rieseberg LH. Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives. Molecular Ecology Resources. 14: 166-77. PMID 24103297 DOI: 10.1111/1755-0998.12163  0.44
2013 Simko I, Atallah AJ, Ochoa OE, Antonise R, Galeano CH, Truco MJ, Michelmore RW. Identification of QTLs conferring resistance to downy mildew in legacy cultivars of lettuce. Scientific Reports. 3: 2875. PMID 24096732 DOI: 10.1038/srep02875  0.44
2013 Atkinson LD, McHale LK, Truco MJ, Hilton HW, Lynn J, Schut JW, Michelmore RW, Hand P, Pink DA. An intra-specific linkage map of lettuce (Lactuca sativa) and genetic analysis of postharvest discolouration traits. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 126: 2737-52. PMID 23959526 DOI: 10.1007/s00122-013-2168-8  0.44
2013 Nandety RS, Caplan JL, Cavanaugh K, Perroud B, Wroblewski T, Michelmore RW, Meyers BC. The role of TIR-NBS and TIR-X proteins in plant basal defense responses. Plant Physiology. 162: 1459-72. PMID 23735504 DOI: 10.1104/pp.113.219162  0.44
2013 Michelmore RW, Christopoulou M, Caldwell KS. Impacts of resistance gene genetics, function, and evolution on a durable future. Annual Review of Phytopathology. 51: 291-319. PMID 23682913 DOI: 10.1146/annurev-phyto-082712-102334  0.44
2013 Truco MJ, Ashrafi H, Kozik A, van Leeuwen H, Bowers J, Reyes Chin Wo S, Stoffel K, Xu H, Hill T, Van Deynze A, Michelmore RW. An Ultra High-Density, Transcript-Based, Genetic Map of Lettuce. G3 (Bethesda, Md.). PMID 23550116 DOI: 10.1534/g3.112.004929  0.44
2013 Hill TA, Ashrafi H, Reyes-Chin-Wo S, Yao J, Stoffel K, Truco MJ, Kozik A, Michelmore RW, Van Deynze A. Characterization of Capsicum annuum genetic diversity and population structure based on parallel polymorphism discovery with a 30K unigene Pepper GeneChip. Plos One. 8: e56200. PMID 23409153 DOI: 10.1371/journal.pone.0056200  0.44
2012 Stoffel K, van Leeuwen H, Kozik A, Caldwell D, Ashrafi H, Cui X, Tan X, Hill T, Reyes-Chin-Wo S, Truco MJ, Michelmore RW, Van Deynze A. Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.). Bmc Genomics. 13: 185. PMID 22583801 DOI: 10.1186/1471-2164-13-185  0.44
2012 Lee J, Teitzel GM, Munkvold K, del Pozo O, Martin GB, Michelmore RW, Greenberg JT. Type III secretion and effectors shape the survival and growth pattern of Pseudomonas syringae on leaf surfaces. Plant Physiology. 158: 1803-18. PMID 22319072 DOI: 10.1104/pp.111.190686  0.44
2012 Lai Z, Kane NC, Kozik A, Hodgins KA, Dlugosch KM, Barker MS, Matvienko M, Yu Q, Turner KG, Pearl SA, Bell GD, Zou Y, Grassa C, Guggisberg A, Adams KL, ... ... Michelmore RW, et al. Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression. American Journal of Botany. 99: 209-18. PMID 22058181 DOI: 10.3732/ajb.1100313  0.44
2011 Cantu D, Govindarajulu M, Kozik A, Wang M, Chen X, Kojima KK, Jurka J, Michelmore RW, Dubcovsky J. Next generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust. Plos One. 6: e24230. PMID 21909385 DOI: 10.1371/journal.pone.0024230  0.44
2011 Argyris J, Truco MJ, Ochoa O, McHale L, Dahal P, Van Deynze A, Michelmore RW, Bradford KJ. A gene encoding an abscisic acid biosynthetic enzyme (LsNCED4) collocates with the high temperature germination locus Htg6.1 in lettuce (Lactuca sp.). Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 122: 95-108. PMID 20703871 DOI: 10.1007/s00122-010-1425-3  0.44
2010 Cantu D, Vanzetti LS, Sumner A, Dubcovsky M, Matvienko M, Distelfeld A, Michelmore RW, Dubcovsky J. Small RNAs, DNA methylation and transposable elements in wheat. Bmc Genomics. 11: 408. PMID 20584339 DOI: 10.1186/1471-2164-11-408  0.44
2009 Simko I, Pechenick DA, McHale LK, Truco MJ, Ochoa OE, Michelmore RW, Scheffler BE. Association mapping and marker-assisted selection of the lettuce dieback resistance gene Tvr1. Bmc Plant Biology. 9: 135. PMID 19930659 DOI: 10.1186/1471-2229-9-135  0.44
2009 Ferrante P, Clarke CR, Cavanaugh KA, Michelmore RW, Buonaurio R, Vinatzer BA. Contributions of the effector gene hopQ1-1 to differences in host range between Pseudomonas syringae pv. phaseolicola and P. syringae pv. tabaci. Molecular Plant Pathology. 10: 837-42. PMID 19849789 DOI: 10.1111/j.1364-3703.2009.00577.x  0.44
2009 Chapman MA, Hvala J, Strever J, Matvienko M, Kozik A, Michelmore RW, Tang S, Knapp SJ, Burke JM. Development, polymorphism, and cross-taxon utility of EST-SSR markers from safflower (Carthamus tinctorius L.). Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 120: 85-91. PMID 19820913 DOI: 10.1007/s00122-009-1161-8  0.44
2009 Luo Y, Caldwell KS, Wroblewski T, Wright ME, Michelmore RW. Proteolysis of a negative regulator of innate immunity is dependent on resistance genes in tomato and Nicotiana benthamiana and induced by multiple bacterial effectors. The Plant Cell. 21: 2458-72. PMID 19671880 DOI: 10.1105/tpc.107.056044  0.44
2009 Wroblewski T, Caldwell KS, Piskurewicz U, Cavanaugh KA, Xu H, Kozik A, Ochoa O, McHale LK, Lahre K, Jelenska J, Castillo JA, Blumenthal D, Vinatzer BA, Greenberg JT, Michelmore RW. Comparative large-scale analysis of interactions between several crop species and the effector repertoires from multiple pathovars of Pseudomonas and Ralstonia. Plant Physiology. 150: 1733-49. PMID 19571308 DOI: 10.1104/pp.109.140251  0.44
2009 Caldwell KS, Michelmore RW. Arabidopsis thaliana genes encoding defense signaling and recognition proteins exhibit contrasting evolutionary dynamics. Genetics. 181: 671-84. PMID 19064707 DOI: 10.1534/genetics.108.097279  0.36
2009 McHale LK, Truco MJ, Kozik A, Wroblewski T, Ochoa OE, Lahre KA, Knapp SJ, Michelmore RW. The genomic architecture of disease resistance in lettuce. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 118: 565-80. PMID 19005638 DOI: 10.1007/s00122-008-0921-1  0.44
2008 Barker MS, Kane NC, Matvienko M, Kozik A, Michelmore RW, Knapp SJ, Rieseberg LH. Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years. Molecular Biology and Evolution. 25: 2445-55. PMID 18728074 DOI: 10.1093/molbev/msn187  0.44
2008 Pignatta D, Dilkes B, Wroblewski T, Michelmore RW, Comai L. Transgene-induced gene silencing is not affected by a change in ploidy level Plos One. 3. PMID 18725969 DOI: 10.1371/journal.pone.0003061  0.44
2008 Radwan O, Gandhi S, Heesacker A, Whitaker B, Taylor C, Plocik A, Kesseli R, Kozik A, Michelmore RW, Knapp SJ. Genetic diversity and genomic distribution of homologs encoding NBS-LRR disease resistance proteins in sunflower. Molecular Genetics and Genomics : Mgg. 280: 111-25. PMID 18553106 DOI: 10.1007/s00438-008-0346-1  0.44
2008 Adams-Phillips L, Wan J, Tan X, Dunning FM, Meyers BC, Michelmore RW, Bent AF. Discovery of ADP-ribosylation and other plant defense pathway elements through expression profiling of four different Arabidopsis-Pseudomonas R-avr interactions. Molecular Plant-Microbe Interactions : Mpmi. 21: 646-57. PMID 18393624 DOI: 10.1094/MPMI-21-5-0646  0.44
2008 Kuang H, Caldwell KS, Meyers BC, Michelmore RW. Frequent sequence exchanges between homologs of RPP8 in Arabidopsis are not necessarily associated with genomic proximity. The Plant Journal : For Cell and Molecular Biology. 54: 69-80. PMID 18182023 DOI: 10.1111/j.1365-313X.2008.03408.x  0.72
2007 Chen J, Agrawal V, Rattray M, West MA, St Clair DA, Michelmore RW, Coughlan SJ, Meyers BC. A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis. Bmc Genomics. 8: 414. PMID 17997849 DOI: 10.1186/1471-2164-8-414  0.72
2007 Tan X, Meyers BC, Kozik A, West MA, Morgante M, St Clair DA, Bent AF, Michelmore RW. Global expression analysis of nucleotide binding site-leucine rich repeat-encoding and related genes in Arabidopsis. Bmc Plant Biology. 7: 56. PMID 17956627 DOI: 10.1186/1471-2229-7-56  0.72
2007 van Leeuwen H, Kliebenstein DJ, West MA, Kim K, van Poecke R, Katagiri F, Michelmore RW, Doerge RW, St Clair DA. Natural variation among Arabidopsis thaliana accessions for transcriptome response to exogenous salicylic acid. The Plant Cell. 19: 2099-110. PMID 17630278 DOI: 10.1105/tpc.107.050641  0.44
2007 Wroblewski T, Piskurewicz U, Tomczak A, Ochoa O, Michelmore RW. Silencing of the major family of NBS-LRR-encoding genes in lettuce results in the loss of multiple resistance specificities. The Plant Journal : For Cell and Molecular Biology. 51: 803-18. PMID 17587302 DOI: 10.1111/j.1365-313X.2007.03182.x  0.36
2007 Zhang FZ, Wagstaff C, Rae AM, Sihota AK, Keevil CW, Rothwell SD, Clarkson GJ, Michelmore RW, Truco MJ, Dixon MS, Taylor G. QTLs for shelf life in lettuce co-locate with those for leaf biophysical properties but not with those for leaf developmental traits. Journal of Experimental Botany. 58: 1433-49. PMID 17347132 DOI: 10.1093/jxb/erm006  0.44
2007 Church SA, Livingstone K, Lai Z, Kozik A, Knapp SJ, Michelmore RW, Rieseberg LH. Using variable rate models to identify genes under selection in sequence pairs: their validity and limitations for EST sequences. Journal of Molecular Evolution. 64: 171-80. PMID 17200807 DOI: 10.1007/s00239-005-0299-5  0.44
2007 West MA, Kim K, Kliebenstein DJ, van Leeuwen H, Michelmore RW, Doerge RW, St Clair DA. Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in Arabidopsis. Genetics. 175: 1441-50. PMID 17179097 DOI: 10.1534/genetics.106.064972  0.44
2007 Rose LE, Michelmore RW, Langley CH. Natural variation in the Pto disease resistance gene within species of wild tomato (Lycopersicon). II. Population genetics of Pto. Genetics. 175: 1307-19. PMID 17179076 DOI: 10.1534/genetics.106.063602  0.44
2006 Bushman BS, Scholte AA, Cornish K, Scott DJ, Brichta JL, Vederas JC, Ochoa O, Michelmore RW, Shintani DK, Knapp SJ. Identification and comparison of natural rubber from two Lactuca species. Phytochemistry. 67: 2590-6. PMID 17055543 DOI: 10.1016/j.phytochem.2006.09.012  0.44
2006 Kuang H, Ochoa OE, Nevo E, Michelmore RW. The disease resistance gene Dm3 is infrequent in natural populations of Lactuca serriola due to deletions and frequent gene conversions at the RGC2 locus. The Plant Journal : For Cell and Molecular Biology. 47: 38-48. PMID 16762035 DOI: 10.1111/j.1365-313X.2006.02755.x  0.44
2006 West MA, van Leeuwen H, Kozik A, Kliebenstein DJ, Doerge RW, St Clair DA, Michelmore RW. High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis. Genome Research. 16: 787-95. PMID 16702412 DOI: 10.1101/gr.5011206  0.44
2006 McHale L, Tan X, Koehl P, Michelmore RW. Plant NBS-LRR proteins: adaptable guards. Genome Biology. 7: 212. PMID 16677430 DOI: 10.1186/gb-2006-7-4-212  0.44
2006 Kliebenstein DJ, West MA, van Leeuwen H, Kim K, Doerge RW, Michelmore RW, St Clair DA. Genomic survey of gene expression diversity in Arabidopsis thaliana. Genetics. 172: 1179-89. PMID 16204207 DOI: 10.1534/genetics.105.049353  0.44
2005 Rose LE, Langley CH, Bernal AJ, Michelmore RW. Natural variation in the Pto pathogen resistance gene within species of wild tomato (Lycopersicon). I. Functional analysis of Pto alleles. Genetics. 171: 345-57. PMID 15944360 DOI: 10.1534/genetics.104.039339  0.44
2005 Bernal AJ, Pan Q, Pollack J, Rose L, Kozik A, Willits N, Luo Y, Guittet M, Kochetkova E, Michelmore RW. Functional analysis of the plant disease resistance gene Pto using DNA shuffling. The Journal of Biological Chemistry. 280: 23073-83. PMID 15790558 DOI: 10.1074/jbc.M500992200  0.44
2004 Brown S, Koike ST, Ochoa OE, Laemmlen F, Michelmore RW. Insensitivity to the Fungicide Fosetyl-Aluminum in California Isolates of the Lettuce Downy Mildew Pathogen, Bremia lactucae. Plant Disease. 88: 502-508. PMID 30812654 DOI: 10.1094/PDIS.2004.88.5.502  0.44
2004 Kuang H, Woo SS, Meyers BC, Nevo E, Michelmore RW. Multiple genetic processes result in heterogeneous rates of evolution within the major cluster disease resistance genes in lettuce. The Plant Cell. 16: 2870-94. PMID 15494555 DOI: 10.1105/tpc.104.025502  0.72
2004 Rose LE, Bittner-Eddy PD, Langley CH, Holub EB, Michelmore RW, Beynon JL. The maintenance of extreme amino acid diversity at the disease resistance gene, RPP13, in Arabidopsis thaliana. Genetics. 166: 1517-27. PMID 15082565 DOI: 10.1534/genetics.166.3.1517  0.44
2003 Moreno-Vázquez S, Ochoa OE, Faber N, Chao S, Jacobs JM, Maisonneuve B, Kesseli RV, Michelmore RW. SNP-based codominant markers for a recessive gene conferring resistance to corky root rot (Rhizomonas suberifaciens) in lettuce (Lactuca sativa). Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 46: 1059-69. PMID 14663524 DOI: 10.1139/g03-073  0.44
2003 Sicard D, Legg E, Brown S, Babu NK, Ochoa O, Sudarshana P, Michelmore RW. A genetic map of the lettuce downy mildew pathogen, Bremia lactucae, constructed from molecular markers and avirulence genes. Fungal Genetics and Biology : Fg & B. 39: 16-30. PMID 12742060 DOI: 10.1016/S1087-1845(03)00005-7  0.44
2003 Meyers BC, Kozik A, Griego A, Kuang H, Michelmore RW. Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis. The Plant Cell. 15: 809-34. PMID 12671079  0.72
2002 Meyers BC, Morgante M, Michelmore RW. TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes. The Plant Journal : For Cell and Molecular Biology. 32: 77-92. PMID 12366802  0.72
2002 Mondragón-Palomino M, Meyers BC, Michelmore RW, Gaut BS. Patterns of positive selection in the complete NBS-LRR gene family of Arabidopsis thaliana. Genome Research. 12: 1305-15. PMID 12213767 DOI: 10.1101/gr.159402  0.44
2002 Chang JH, Tai YS, Bernal AJ, Lavelle DT, Staskawicz BJ, Michelmore RW. Functional analyses of the Pto resistance gene family in tomato and the identification of a minor resistance determinant in a susceptible haplotype. Molecular Plant-Microbe Interactions : Mpmi. 15: 281-91. PMID 11952131 DOI: 10.1094/MPMI.2002.15.3.281  0.44
2002 Shen KA, Chin DB, Arroyo-Garcia R, Ochoa OE, Lavelle DO, Wroblewski T, Meyers BC, Michelmore RW. Dm3 is one member of a large constitutively expressed family of nucleotide binding site-leucine-rich repeat encoding genes. Molecular Plant-Microbe Interactions : Mpmi. 15: 251-61. PMID 11952128 DOI: 10.1094/MPMI.2002.15.3.251  0.72
2001 Chin DB, Arroyo-Garcia R, Ochoa OE, Kesseli RV, Lavelle DO, Michelmore RW. Recombination and spontaneous mutation at the major cluster of resistance genes in lettuce (Lactuca sativa) Genetics. 157: 831-849. PMID 11157000  0.44
1998 Meyers BC, Chin DB, Shen KA, Sivaramakrishnan S, Lavelle DO, Zhang Z, Michelmore RW. The major resistance gene cluster in lettuce is highly duplicated and spans several megabases. The Plant Cell. 10: 1817-32. PMID 9811791  0.72
1998 Shen KA, Meyers BC, Islam-Faridi MN, Chin DB, Stelly DM, Michelmore RW. Resistance gene candidates identified by PCR with degenerate oligonucleotide primers map to clusters of resistance genes in lettuce. Molecular Plant-Microbe Interactions : Mpmi. 11: 815-23. PMID 9675895 DOI: 10.1094/MPMI.1998.11.8.815  0.72
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