| Year |
Citation |
Score |
| 2024 |
Ungerleider NA, Roberts C, O'Grady TM, Nguyen TT, Baddoo M, Wang J, Ishaq E, Concha M, Lam M, Bass J, Nguyen TD, Van Otterloo N, Wickramarachchige-Dona N, Wyczechowska D, Morales M, ... ... Flemington EK, et al. Viral reprogramming of host transcription initiation. Nucleic Acids Research. PMID 38471819 DOI: 10.1093/nar/gkae175 |
0.301 |
|
| 2020 |
Yin Q, Strong MJ, Zhuang Y, Flemington EK, Kaminski N, de Andrade JA, Lasky JA. Assessment of viral RNA in idiopathic pulmonary fibrosis using RNA-seq. Bmc Pulmonary Medicine. 20: 81. PMID 32245461 DOI: 10.1186/S12890-020-1114-1 |
0.307 |
|
| 2019 |
Cao S, Ma T, Ungerleider N, Roberts C, Kobelski M, Jin L, Concha M, Wang X, Baddoo M, Nguyen HM, Corey E, Fazli L, Ledet E, Zhang R, Silberstein JL, ... ... Flemington EK, et al. Circular RNAs add diversity to androgen receptor isoform repertoire in castration-resistant prostate cancer. Oncogene. PMID 31409897 DOI: 10.1038/S41388-019-0947-7 |
0.32 |
|
| 2019 |
O'Grady T, Feswick A, Hoffman BA, Wang Y, Medina EM, Kara M, van Dyk LF, Flemington EK, Tibbetts SA. Genome-wide Transcript Structure Resolution Reveals Abundant Alternate Isoform Usage from Murine Gammaherpesvirus 68. Cell Reports. 27: 3988-4002.e5. PMID 31242428 DOI: 10.1016/J.Celrep.2019.05.086 |
0.39 |
|
| 2019 |
Kheir F, Zhao M, Strong MJ, Yu Y, Nanbo A, Flemington EK, Morris GF, Reiss K, Li L, Lin Z. Detection of Epstein-Barr Virus Infection in Non-Small Cell Lung Cancer. Cancers. 11. PMID 31159203 DOI: 10.3390/Cancers11060759 |
0.396 |
|
| 2019 |
Ungerleider N, Flemington E. SpliceV: analysis and publication quality printing of linear and circular RNA splicing, expression and regulation. Bmc Bioinformatics. 20: 1-7. PMID 31068132 DOI: 10.1186/S12859-019-2865-7 |
0.356 |
|
| 2019 |
Hilliard S, Song R, Liu H, Chen CH, Li Y, Baddoo M, Flemington E, Wanek A, Kolls J, Saifudeen Z, El-Dahr SS. Defining the dynamic chromatin landscape of mouse nephron progenitors. Biology Open. PMID 31064740 DOI: 10.1242/Bio.042754 |
0.311 |
|
| 2019 |
Ungerleider NA, Tibbetts SA, Renne R, Flemington EK. Gammaherpesvirus RNAs Come Full Circle. Mbio. 10. PMID 30940699 DOI: 10.1128/Mbio.00071-19 |
0.357 |
|
| 2019 |
Bai S, Cao S, Jin L, Kobelski M, Schouest B, Wang X, Ungerleider N, Baddoo M, Zhang W, Corey E, Vessella RL, Dong X, Zhang K, Yu X, Flemington EK, et al. A positive role of c-Myc in regulating androgen receptor and its splice variants in prostate cancer. Oncogene. PMID 30820039 DOI: 10.1038/S41388-019-0768-8 |
0.322 |
|
| 2019 |
Bai YL, Baddoo M, Flemington EK, Nakhoul HN, Liu YZ. Screen technical noise in single cell RNA sequencing data. Genomics. PMID 30802598 DOI: 10.1016/J.Ygeno.2019.02.014 |
0.313 |
|
| 2019 |
Kara M, O'Grady T, Feldman ER, Feswick A, Wang Y, Flemington EK, Tibbetts SA. Gammaherpesvirus Readthrough Transcription Generates a Long Non-Coding RNA That Is Regulated by Antisense miRNAs and Correlates with Enhanced Lytic Replication In Vivo. Non-Coding Rna. 5. PMID 30634714 DOI: 10.3390/Ncrna5010006 |
0.424 |
|
| 2018 |
Bullard WL, Flemington EK, Renne R, Tibbetts SA. Connivance, Complicity, or Collusion? The Role of Noncoding RNAs in Promoting Gammaherpesvirus Tumorigenesis. Trends in Cancer. 4: 729-740. PMID 30352676 DOI: 10.1016/J.Trecan.2018.09.005 |
0.355 |
|
| 2018 |
Ungerleider N, Concha M, Lin Z, Roberts C, Wang X, Cao S, Baddoo M, Moss WN, Yu Y, Seddon M, Lehman T, Tibbetts S, Renne R, Dong Y, Flemington EK. The Epstein Barr virus circRNAome. Plos Pathogens. 14: e1007206. PMID 30080890 DOI: 10.1371/Journal.Ppat.1007206 |
0.414 |
|
| 2018 |
Dai L, Del Valle L, Miley W, Whitby D, Ochoa AC, Flemington EK, Qin Z. Transactivation of human endogenous retrovirus K (HERV-K) by KSHV promotes Kaposi's sarcoma development. Oncogene. PMID 29743595 DOI: 10.1038/S41388-018-0282-4 |
0.3 |
|
| 2018 |
Penrose H, Cable C, Heller S, Ungerleider N, Nakhoul H, Flemington E, Crawford SE, Savkovic SD. 63 - Loss of Colonic FOXO3 Transcription Function Promotes Inflammation Mediated Cancer Progression: A Next Generation Sequencing and Bioinformatics Approach for Identification of the Immune Cell Landscape and Novel Regulators Gastroenterology. 154. DOI: 10.1016/S0016-5085(18)30552-3 |
0.349 |
|
| 2017 |
Li M, Li X, Zhuang Y, Flemington EK, Zhen L, Shan B. Induction of a novel isoform of the lncRNA HOTAIR in Claudin-low breast cancer cells attached to extracellular matrix. Molecular Oncology. PMID 28846832 DOI: 10.1002/1878-0261.12133 |
0.307 |
|
| 2017 |
Yin Q, Sides M, Parsons CH, Flemington EK, Lasky JA. Arsenic trioxide inhibits EBV reactivation and promotes cell death in EBV-positive lymphoma cells. Virology Journal. 14: 121. PMID 28637474 DOI: 10.1186/S12985-017-0784-7 |
0.312 |
|
| 2017 |
Dai L, Lin Z, Qiao J, Chen Y, Flemington EK, Qin Z. Ribonucleotide reductase represents a novel therapeutic target in primary effusion lymphoma. Oncogene. PMID 28459467 DOI: 10.1038/Onc.2017.122 |
0.351 |
|
| 2017 |
Penrose HM, Heller S, Cable C, Nakhoul H, Baddoo M, Flemington E, Crawford SE, Savkovic SD. High-fat diet induced leptin and Wnt expression: RNA-sequencing and pathway analysis of mouse colonic tissue and tumors. Carcinogenesis. 38: 302-311. PMID 28426873 DOI: 10.1093/Carcin/Bgx001 |
0.336 |
|
| 2017 |
Zhang R, Strong MJ, Baddoo M, Lin Z, Wang YP, Flemington EK, Liu YZ. Interaction of Epstein-Barr virus genes with human gastric carcinoma transcriptome. Oncotarget. PMID 28415594 DOI: 10.18632/Oncotarget.16417 |
0.366 |
|
| 2017 |
O'Grady T, Baddoo M, Flemington EK. Analysis of EBV Transcription Using High-Throughput RNA Sequencing. Methods in Molecular Biology (Clifton, N.J.). 1532: 105-121. PMID 27873270 DOI: 10.1007/978-1-4939-6655-4_7 |
0.382 |
|
| 2016 |
Deininger P, Morales ME, White TB, Baddoo M, Hedges DJ, Servant G, Srivastav S, Smither ME, Concha M, DeHaro DL, Flemington EK, Belancio VP. A comprehensive approach to expression of L1 loci. Nucleic Acids Research. PMID 27899577 DOI: 10.1093/Nar/Gkw1067 |
0.707 |
|
| 2016 |
O'Grady T, Wang X, Höner Zu Bentrup K, Baddoo M, Concha M, Flemington EK. Global transcript structure resolution of high gene density genomes through multi-platform data integration. Nucleic Acids Research. PMID 27407110 DOI: 10.1093/Nar/Gkw629 |
0.392 |
|
| 2016 |
Strong MJ, Blanchard E, Lin Z, Morris CA, Baddoo M, Taylor CM, Ware ML, Flemington EK. A comprehensive next generation sequencing-based virome assessment in brain tissue suggests no major virus - tumor association. Acta Neuropathologica Communications. 4: 71. PMID 27402152 DOI: 10.1186/S40478-016-0338-Z |
0.354 |
|
| 2016 |
Zhang J, Baddoo M, Han C, Strong MJ, Cvitanovic J, Moroz K, Dash S, Flemington EK, Wu T. Gene network analysis reveals a novel 22-gene signature of carbon metabolism in hepatocellular carcinoma. Oncotarget. PMID 27363021 DOI: 10.18632/Oncotarget.10249 |
0.31 |
|
| 2016 |
Dai L, Bai L, Lin Z, Qiao J, Yang L, Flemington EK, Zabaleta J, Qin Z. Transcriptomic analysis of KSHV-infected primary oral fibroblasts: The role of interferon-induced genes in the latency of oncogenic virus. Oncotarget. PMID 27363016 DOI: 10.18632/Oncotarget.9720 |
0.342 |
|
| 2016 |
Zhou X, Hao Q, Liao P, Luo S, Zhang M, Hu G, Liu H, Zhang Y, Cao B, Baddoo M, Flemington EK, Zeng SX, Lu H. Nerve growth factor receptor negates the tumor suppressor p53 as a feedback regulator. Elife. 5. PMID 27282385 DOI: 10.7554/Elife.15099 |
0.312 |
|
| 2016 |
Yin Q, Wang X, Roberts C, Flemington EK, Lasky JA. Methylation status and AP1 elements are involved in EBV-mediated miR-155 expression in EBV positive lymphoma cells. Virology. 494: 158-167. PMID 27110708 DOI: 10.1016/J.Virol.2016.04.005 |
0.338 |
|
| 2016 |
Liao JM, Cao B, Deng J, Zhou X, Strong M, Zeng S, Xiong J, Flemington E, Lu H. TFIIS.h, a new target of p53, regulates transcription efficiency of pro-apoptotic bax gene. Scientific Reports. 6: 23542. PMID 27005522 DOI: 10.1038/Srep23542 |
0.345 |
|
| 2016 |
Kim JH, Baddoo MC, Park EY, Stone JK, Park H, Butler TW, Huang G, Yan X, Pauli-Behn F, Myers RM, Tan M, Flemington EK, Lim ST, Ahn EE. SON and Its Alternatively Spliced Isoforms Control MLL Complex-Mediated H3K4me3 and Transcription of Leukemia-Associated Genes. Molecular Cell. 61: 859-873. PMID 26990989 DOI: 10.1016/J.Molcel.2016.02.024 |
0.373 |
|
| 2016 |
Zhang W, Edwards A, Fan W, Flemington EK, Zhang K. The modularity and dynamicity of miRNA-mRNA interactions in high-grade serous ovarian carcinomas and the prognostic implication. Computational Biology and Chemistry. PMID 26949157 DOI: 10.1016/J.Compbiolchem.2016.02.005 |
0.311 |
|
| 2016 |
Liu YZ, Maney P, Puri J, Zhou Y, Baddoo M, Strong M, Wang YP, Flemington E, Deng HW. RNA-sequencing study of peripheral blood monocytes in chronic periodontitis. Gene. PMID 26812355 DOI: 10.1016/J.Gene.2016.01.036 |
0.315 |
|
| 2016 |
Lin Z, Swan K, Zhang X, Cao S, Brett Z, Drury S, Strong MJ, Fewell C, Puetter A, Wang X, Ferris M, Sullivan DE, Li L, Flemington EK. Secreted oral epithelial cell membrane vesicles induce Epstein-Barr virus (EBV) reactivation in latently infected B-cells. Journal of Virology. PMID 26764001 DOI: 10.1128/Jvi.02830-15 |
0.344 |
|
| 2016 |
Strong MJ, O'Grady T, Lin Z, Xu G, Baddoo M, Parsons C, Zhang K, Taylor CM, Flemington EK. Correction for Strong et al., Epstein-Barr Virus and Human Herpesvirus 6 Detection in a Non-Hodgkin's Diffuse Large B-Cell Lymphoma Cohort by Using RNA Sequencing. Journal of Virology. 90: 1152. PMID 26719559 DOI: 10.1128/Jvi.02772-15 |
0.316 |
|
| 2016 |
Burks HE, Rhodes LV, Martin EC, Hoang VT, Elliott S, Badoo M, Phamduy T, Buechlein A, Rusch D, Chrisey D, Flemington E, Nephew K, Collins-Burow B, Burow ME. Abstract 4410: ZEB2 drives cell motility and metastasis in ER+ breast cancer cells through a novel, E-cadherin independent pathway Cancer Research. 76: 4410-4410. DOI: 10.1158/1538-7445.Am2016-4410 |
0.316 |
|
| 2016 |
Yadav S, Anbalagan M, Baddoo M, Flemington E, Moroz K, Hering-Smith K, Makridakis N. Abstract 2753: Landscape of somatic mutations in DNA repair genes in prostate cancer Cancer Research. 76: 2753-2753. DOI: 10.1158/1538-7445.Am2016-2753 |
0.305 |
|
| 2016 |
Zhang X, Sullivan R, Hite N, Maresh G, Hellmers L, Lin Z, Flemington E, Salomon C, Green H, Margolin D, Li L. Abstract 1558: The critical role of lymph node stromal cell-derived microvesicles in colorectal cancer metastasis Cancer Research. 76: 1558-1558. DOI: 10.1158/1538-7445.Am2016-1558 |
0.316 |
|
| 2015 |
Strong MJ, Laskow T, Nakhoul H, Blanchard E, Liu Y, Wang X, Baddoo M, Lin Z, Yin Q, Flemington EK. Latency expression of the Epstein-Barr virus-encoded MHC class I TAP inhibitor, BNLF2a in EBV-positive gastric carcinomas. Journal of Virology. PMID 26178981 DOI: 10.1128/Jvi.01110-15 |
0.345 |
|
| 2015 |
Xu D, Zhan Y, Qi Y, Cao B, Bai S, Xu W, Gambhir SS, Lee P, Sartor O, Flemington EK, Zhang H, Hu CD, Dong Y. Androgen receptor splice variants dimerize to transactivate target genes. Cancer Research. PMID 26060018 DOI: 10.1158/0008-5472.Can-15-0381 |
0.303 |
|
| 2015 |
Cao S, Moss W, O'Grady T, Concha M, Strong MJ, Wang X, Yu Y, Baddoo M, Zhang K, Fewell C, Lin Z, Dong Y, Flemington EK. New Noncoding Lytic Transcripts Derived from the Epstein-Barr Virus Latency Origin of Replication, oriP, Are Hyperedited, Bind the Paraspeckle Protein, NONO/p54nrb, and Support Viral Lytic Transcription. Journal of Virology. 89: 7120-32. PMID 25926645 DOI: 10.1128/Jvi.00608-15 |
0.411 |
|
| 2015 |
Cao S, Strong MJ, Wang X, Moss WN, Concha M, Lin Z, O'Grady T, Baddoo M, Fewell C, Renne R, Flemington EK. High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. Journal of Virology. 89: 713-29. PMID 25355872 DOI: 10.1128/Jvi.02570-14 |
0.433 |
|
| 2015 |
Yin Q, Strong M, Flemington E, Lasky J. RNA-seq analysis does not substantiate a causative link between herpes virus infection and IPF European Respiratory Journal. 46. DOI: 10.1183/13993003.Congress-2015.Oa3511 |
0.342 |
|
| 2014 |
Strong MJ, Xu G, Morici L, Splinter Bon-Durant S, Baddoo M, Lin Z, Fewell C, Taylor CM, Flemington EK. Microbial contamination in next generation sequencing: implications for sequence-based analysis of clinical samples. Plos Pathogens. 10: e1004437. PMID 25412476 DOI: 10.1371/Journal.Ppat.1004437 |
0.302 |
|
| 2014 |
Martin EC, Krebs AE, Burks HE, Elliott S, Baddoo M, Collins-Burow BM, Flemington EK, Burow ME. miR-155 induced transcriptome changes in the MCF-7 breast cancer cell line leads to enhanced mitogen activated protein kinase signaling. Genes & Cancer. 5: 353-64. PMID 25352952 DOI: 10.18632/Genesandcancer.33 |
0.335 |
|
| 2014 |
Strong MJ, Lin Z, Flemington EK. Expanding the conversation on high-throughput virome sequencing standards to include consideration of microbial contamination sources. Mbio. 5: e01989. PMID 25352620 DOI: 10.1128/Mbio.01989-14 |
0.303 |
|
| 2014 |
Zhuang Y, Nguyen HT, Burow ME, Zhuo Y, El-Dahr SS, Yao X, Cao S, Flemington EK, Nephew KP, Fang F, Collins-Burow B, Rhodes LV, Yu Q, Jayawickramarajah J, Shan B. Elevated expression of long intergenic non-coding RNA HOTAIR in a basal-like variant of MCF-7 breast cancer cells. Molecular Carcinogenesis. PMID 25328122 DOI: 10.1002/Mc.22237 |
0.37 |
|
| 2014 |
Xu G, Strong MJ, Lacey MR, Baribault C, Flemington EK, Taylor CM. RNA CoMPASS: a dual approach for pathogen and host transcriptome analysis of RNA-seq datasets. Plos One. 9: e89445. PMID 24586784 DOI: 10.1371/Journal.Pone.0089445 |
0.34 |
|
| 2014 |
O'Grady T, Cao S, Strong MJ, Concha M, Wang X, Splinter Bondurant S, Adams M, Baddoo M, Srivastav SK, Lin Z, Fewell C, Yin Q, Flemington EK. Global bidirectional transcription of the Epstein-Barr virus genome during reactivation. Journal of Virology. 88: 1604-16. PMID 24257595 DOI: 10.1128/Jvi.02989-13 |
0.429 |
|
| 2014 |
Qin Z, Dai L, Trillo-Tinoco J, Senkal C, Wang W, Reske T, Bonstaff K, Del Valle L, Rodriguez P, Flemington E, Voelkel-Johnson C, Smith CD, Ogretmen B, Parsons C. Targeting sphingosine kinase induces apoptosis and tumor regression for KSHV-associated primary effusion lymphoma. Molecular Cancer Therapeutics. 13: 154-64. PMID 24140934 DOI: 10.1158/1535-7163.Mct-13-0466 |
0.363 |
|
| 2014 |
Martin EC, Elliott S, Rhodes LV, Antoon JW, Fewell C, Zhu Y, Driver JL, Jodari-Karimi M, Taylor CW, Flemington EK, Beckman BS, Collins-Burow BM, Burow ME. Preferential star strand biogenesis of pre-miR-24-2 targets PKC-alpha and suppresses cell survival in MCF-7 breast cancer cells. Molecular Carcinogenesis. 53: 38-48. PMID 22911661 DOI: 10.1002/Mc.21946 |
0.303 |
|
| 2014 |
Burks HE, Rhodes L, Martin E, Phamduy T, Elliot S, Hoang V, Segar H, Buechlein A, Rusch D, Miller D, Baddoo M, Flemington E, Nephew K, Chrisey D, Collins-Burow B, et al. Abstract 1034: ZEB2 promotes cell motility and metastasis in ER+ breast cancer cells Cancer Research. 74: 1034-1034. DOI: 10.1158/1538-7445.Am2014-1034 |
0.346 |
|
| 2014 |
Strong MJ, Blanchard G, Baddoo M, Morris C, Taylor CM, Ware ML, Flemington EK. Ge-33A Comprehensive Assessment Of Viral Transcripts In Dna- And Rna-Seq Datasets From High-Grade Gliomas Reveals No Association Neuro-Oncology. 16. DOI: 10.1093/Neuonc/Nou256.32 |
0.394 |
|
| 2013 |
Zhang W, Edwards A, Flemington EK, Zhang K. Inferring polymorphism-induced regulatory gene networks active in human lymphocyte cell lines by weighted linear mixed model analysis of multiple RNA-Seq datasets. Plos One. 8: e78868. PMID 24205334 DOI: 10.1371/Journal.Pone.0078868 |
0.361 |
|
| 2013 |
Strong MJ, O'Grady T, Lin Z, Xu G, Baddoo M, Parsons C, Zhang K, Taylor CM, Flemington EK. Epstein-Barr virus and human herpesvirus 6 detection in a non-Hodgkin's diffuse large B-cell lymphoma cohort by using RNA sequencing. Journal of Virology. 87: 13059-62. PMID 24049168 DOI: 10.1128/Jvi.02380-13 |
0.392 |
|
| 2013 |
Onyeagucha BC, Mercado-Pimentel ME, Hutchison J, Flemington EK, Nelson MA. S100P/RAGE signaling regulates microRNA-155 expression via AP-1 activation in colon cancer. Experimental Cell Research. 319: 2081-90. PMID 23693020 DOI: 10.1016/J.Yexcr.2013.05.009 |
0.317 |
|
| 2013 |
Strong MJ, Xu G, Coco J, Baribault C, Vinay DS, Lacey MR, Strong AL, Lehman TA, Seddon MB, Lin Z, Concha M, Baddoo M, Ferris M, Swan KF, Sullivan DE, ... ... Flemington EK, et al. Differences in gastric carcinoma microenvironment stratify according to EBV infection intensity: implications for possible immune adjuvant therapy. Plos Pathogens. 9: e1003341. PMID 23671415 DOI: 10.1371/Journal.Ppat.1003341 |
0.345 |
|
| 2013 |
Zhuang Y, Wang X, Nguyen HT, Zhuo Y, Cui X, Fewell C, Flemington EK, Shan B. Induction of long intergenic non-coding RNA HOTAIR in lung cancer cells by type I collagen. Journal of Hematology & Oncology. 6: 35. PMID 23668363 DOI: 10.1186/1756-8722-6-35 |
0.374 |
|
| 2013 |
Marsolier J, Pineau S, Medjkane S, Perichon M, Yin Q, Flemington E, Weitzman MD, Weitzman JB. OncomiR addiction is generated by a miR-155 feedback loop in Theileria-transformed leukocytes. Plos Pathogens. 9: e1003222. PMID 23637592 DOI: 10.1371/Journal.Ppat.1003222 |
0.325 |
|
| 2013 |
Lin Z, Wang X, Strong MJ, Concha M, Baddoo M, Xu G, Baribault C, Fewell C, Hulme W, Hedges D, Taylor CM, Flemington EK. Whole-genome sequencing of the Akata and Mutu Epstein-Barr virus strains. Journal of Virology. 87: 1172-82. PMID 23152513 DOI: 10.1128/Jvi.02517-12 |
0.642 |
|
| 2013 |
Qin Z, Dai L, Plaisance-Bonstaff K, Senkal C, Wang W, Reske TM, Del Valle L, Voelkel-Johnson C, Flemington E, Ogretmen B, Smith CD, Parsons C. Targeting Sphingosine Kinase Induces Apoptosis and Regression Of Virus-Associated Lymphoma In Vivo Blood. 122: 4414-4414. DOI: 10.1182/Blood.V122.21.4414.4414 |
0.375 |
|
| 2013 |
Onyeagucha BC, Mercado-Pimentel M, Flemington E, Nelson MA. Abstract 1806: AP-1 transcriptionally regulates expression of miR-155 in colon cancer cells. Cancer Research. 73: 1806-1806. DOI: 10.1158/1538-7445.Am2013-1806 |
0.316 |
|
| 2012 |
Zhang W, Edwards A, Fan W, Flemington EK, Zhang K. miRNA-mRNA correlation-network modules in human prostate cancer and the differences between primary and metastatic tumor subtypes. Plos One. 7: e40130. PMID 22768240 DOI: 10.1371/Journal.Pone.0040130 |
0.314 |
|
| 2012 |
Zhang W, Edwards A, Zhu D, Flemington EK, Deininger P, Zhang K. miRNA-mediated relationships between Cis-SNP genotypes and transcript intensities in lymphocyte cell lines. Plos One. 7: e31429. PMID 22348086 DOI: 10.1371/Journal.Pone.0031429 |
0.57 |
|
| 2012 |
Lin Z, Puetter A, Coco J, Xu G, Strong MJ, Wang X, Fewell C, Baddoo M, Taylor C, Flemington EK. Detection of murine leukemia virus in the Epstein-Barr virus-positive human B-cell line JY, using a computational RNA-Seq-based exogenous agent detection pipeline, PARSES. Journal of Virology. 86: 2970-7. PMID 22238296 DOI: 10.1128/Jvi.06717-11 |
0.401 |
|
| 2012 |
Concha M, Wang X, Cao S, Baddoo M, Fewell C, Lin Z, Hulme W, Hedges D, McBride J, Flemington EK. Identification of new viral genes and transcript isoforms during Epstein-Barr virus reactivation using RNA-Seq. Journal of Virology. 86: 1458-67. PMID 22090128 DOI: 10.1128/Jvi.06537-11 |
0.682 |
|
| 2011 |
Sides MD, Block GJ, Chadwick RW, Shan B, Flemington EK, Lasky JA. Epstein - Barr virus Latent Membrane Protein 1 suppresses reporter activity through modulation of promyelocytic leukemia protein-nuclear bodies. Virology Journal. 8: 461. PMID 21975125 DOI: 10.1186/1743-422X-8-461 |
0.339 |
|
| 2011 |
Li C, Nguyen HT, Zhuang Y, Lin Y, Flemington EK, Guo W, Guenther J, Burow ME, Morris GF, Sullivan D, Shan B. Post-transcriptional up-regulation of miR-21 by type I collagen. Molecular Carcinogenesis. 50: 563-70. PMID 21647970 DOI: 10.1002/Mc.20742 |
0.343 |
|
| 2011 |
Sides MD, Block GJ, Shan B, Esteves KC, Lin Z, Flemington EK, Lasky JA. Arsenic mediated disruption of promyelocytic leukemia protein nuclear bodies induces ganciclovir susceptibility in Epstein-Barr positive epithelial cells. Virology. 416: 86-97. PMID 21605886 DOI: 10.1016/J.Virol.2011.04.005 |
0.337 |
|
| 2011 |
Deng N, Puetter A, Zhang K, Johnson K, Zhao Z, Taylor C, Flemington EK, Zhu D. Isoform-level microRNA-155 target prediction using RNA-seq. Nucleic Acids Research. 39: e61. PMID 21317189 DOI: 10.1093/Nar/Gkr042 |
0.303 |
|
| 2011 |
Xu G, Deng N, Zhao Z, Judeh T, Flemington E, Zhu D. SAMMate: a GUI tool for processing short read alignments in SAM/BAM format. Source Code For Biology and Medicine. 6: 2. PMID 21232146 DOI: 10.1186/1751-0473-6-2 |
0.332 |
|
| 2011 |
Lin Z, Flemington EK. miRNAs in the pathogenesis of oncogenic human viruses. Cancer Letters. 305: 186-99. PMID 20943311 DOI: 10.1016/J.Canlet.2010.08.018 |
0.307 |
|
| 2010 |
Lin Z, Xu G, Deng N, Taylor C, Zhu D, Flemington EK. Quantitative and qualitative RNA-Seq-based evaluation of Epstein-Barr virus transcription in type I latency Burkitt's lymphoma cells. Journal of Virology. 84: 13053-8. PMID 20943983 DOI: 10.1128/Jvi.01521-10 |
0.417 |
|
| 2010 |
Guenther JF, Cameron JE, Nguyen HT, Wang Y, Sullivan DE, Shan B, Lasky JA, Flemington EK, Morris GF. Modulation of lung inflammation by the Epstein-Barr virus protein Zta. American Journal of Physiology. Lung Cellular and Molecular Physiology. 299: L771-84. PMID 20817778 DOI: 10.1152/Ajplung.00408.2009 |
0.3 |
|
| 2010 |
Xu G, Fewell C, Taylor C, Deng N, Hedges D, Wang X, Zhang K, Lacey M, Zhang H, Yin Q, Cameron J, Lin Z, Zhu D, Flemington EK. Transcriptome and targetome analysis in MIR155 expressing cells using RNA-seq Rna. 16: 1610-1622. PMID 20584899 DOI: 10.1261/Rna.2194910 |
0.653 |
|
| 2010 |
Lin Z, Wang X, Fewell C, Cameron J, Yin Q, Flemington EK. Differential expression of the miR-200 family microRNAs in epithelial and B cells and regulation of Epstein-Barr virus reactivation by the miR-200 family member miR-429. Journal of Virology. 84: 7892-7. PMID 20484493 DOI: 10.1128/Jvi.00379-10 |
0.309 |
|
| 2010 |
Yin Q, Wang X, Fewell C, Cameron J, Zhu H, Baddoo M, Lin Z, Flemington EK. MicroRNA miR-155 inhibits bone morphogenetic protein (BMP) signaling and BMP-mediated Epstein-Barr virus reactivation. Journal of Virology. 84: 6318-27. PMID 20427544 DOI: 10.1128/Jvi.00635-10 |
0.359 |
|
| 2009 |
Molina-Privado I, Rodríguez-Martínez M, Rebollo P, Martín-Pérez D, Artiga MJ, Menárguez J, Flemington EK, Piris MA, Campanero MR. E2F1 expression is deregulated and plays an oncogenic role in sporadic Burkitt's lymphoma. Cancer Research. 69: 4052-8. PMID 19406837 DOI: 10.1158/0008-5472.Can-08-4617 |
0.36 |
|
| 2009 |
Alvaro-Blanco J, Martínez-Gac L, Calonge E, Rodríguez-Martínez M, Molina-Privado I, Redondo JM, Alcamí J, Flemington EK, Campanero MR. A novel factor distinct from E2F mediates C-MYC promoter activation through its E2F element during exit from quiescence. Carcinogenesis. 30: 440-8. PMID 19126644 DOI: 10.1093/Carcin/Bgp002 |
0.339 |
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| 2008 |
Cameron JE, Fewell C, Yin Q, McBride J, Wang X, Lin Z, Flemington EK. Epstein-Barr virus growth/latency III program alters cellular microRNA expression. Virology. 382: 257-66. PMID 18950829 DOI: 10.1016/J.Virol.2008.09.018 |
0.322 |
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| 2008 |
Yin Q, McBride J, Fewell C, Lacey M, Wang X, Lin Z, Cameron J, Flemington EK. MicroRNA-155 is an Epstein-Barr virus-induced gene that modulates Epstein-Barr virus-regulated gene expression pathways. Journal of Virology. 82: 5295-306. PMID 18367535 DOI: 10.1128/Jvi.02380-07 |
0.378 |
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| 2008 |
Cameron JE, Yin Q, Fewell C, Lacey M, McBride J, Wang X, Lin Z, Schaefer BC, Flemington EK. Epstein-Barr virus latent membrane protein 1 induces cellular MicroRNA miR-146a, a modulator of lymphocyte signaling pathways. Journal of Virology. 82: 1946-58. PMID 18057241 DOI: 10.1128/Jvi.02136-07 |
0.324 |
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| 2008 |
Yin Q, Wang X, McBride J, Fewell C, Flemington E. B-cell receptor activation induces BIC/miR-155 expression through a conserved AP-1 element. The Journal of Biological Chemistry. 283: 2654-62. PMID 18048365 DOI: 10.1074/Jbc.M708218200 |
0.348 |
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| 2006 |
Yin Q, Flemington EK. siRNAs against the Epstein Barr virus latency replication factor, EBNA1, inhibit its function and growth of EBV-dependent tumor cells. Virology. 346: 385-93. PMID 16343579 DOI: 10.1016/J.Virol.2005.11.021 |
0.381 |
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| 2005 |
Prabhu R, Vittal P, Yin Q, Flemington E, Garry R, Robichaux WH, Dash S. Small interfering RNA effectively inhibits protein expression and negative strand RNA synthesis from a full-length hepatitis C virus clone. Journal of Medical Virology. 76: 511-9. PMID 15977238 DOI: 10.1002/Jmv.20391 |
0.322 |
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| 2004 |
Lin Z, Yin Q, Flemington E. Identification of a negative regulatory element in the Epstein-Barr virus Zta transactivation domain that is regulated by the cell cycle control factors c-Myc and E2F1. Journal of Virology. 78: 11962-71. PMID 15479836 DOI: 10.1128/Jvi.78.21.11962-11971.2004 |
0.374 |
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| 2004 |
Yin Q, Jupiter K, Flemington EK. The Epstein-Barr virus transactivator Zta binds to its own promoter and is required for full promoter activity during anti-Ig and TGF-beta1 mediated reactivation. Virology. 327: 134-43. PMID 15327904 DOI: 10.1016/J.Virol.2004.06.026 |
0.348 |
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| 2004 |
Flemington EK, Rodriguez A. Use of gene overexpression to assess function in cell cycle control. Methods in Molecular Biology (Clifton, N.J.). 241: 195-206. PMID 14970655 DOI: 10.1385/1-59259-646-0:195 |
0.3 |
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| 2001 |
Rodriguez A, Jung EJ, Yin Q, Cayrol C, Flemington EK. Role of c-myc regulation in Zta-mediated induction of the cyclin-dependent kinase inhibitors p21 and p27 and cell growth arrest Virology. 284: 159-169. PMID 11384216 DOI: 10.1006/Viro.2001.0923 |
0.322 |
|
| 2001 |
Rodriguez A, Jung EJ, Flemington EK. Cell cycle analysis of Epstein-Barr virus-infected cells following treatment with lytic cycle-inducing agents Journal of Virology. 75: 4482-4489. PMID 11312318 DOI: 10.1128/Jvi.75.10.4482-4489.2001 |
0.354 |
|
| 2001 |
Flemington EK. Herpesvirus lytic replication and the cell cycle: arresting new developments. Journal of Virology. 75: 4475-4481. PMID 11312317 DOI: 10.1128/Jvi.75.10.4475-4481.2001 |
0.32 |
|
| 2000 |
Campanero MR, Armstrong MI, Flemington EK. CpG methylation as a mechanism for the regulation of E2F activity Proceedings of the National Academy of Sciences of the United States of America. 97: 6481-6486. PMID 10823896 DOI: 10.1073/Pnas.100340697 |
0.319 |
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| 1999 |
Campanero MR, Armstrong M, Flemington E. Distinct cellular factors regulate the c-myb promoter through its E2F element. Molecular and Cellular Biology. 19: 8442-8450. PMID 10567569 DOI: 10.1128/Mcb.19.12.8442 |
0.316 |
|
| 1999 |
Rodriguez A, Armstrong M, Dwyer D, Flemington E. Genetic dissection of cell growth arrest functions mediated by the Epstein-Barr virus lytic gene product, Zta Journal of Virology. 73: 9029-9038. PMID 10516009 DOI: 10.1128/Jvi.73.11.9029-9038.1999 |
0.355 |
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| 1999 |
Rodriguez A, Flemington EK. Transfection-mediated cell-cycle signaling: considerations for transient transfection-based cell-cycle studies. Analytical Biochemistry. 272: 171-181. PMID 10415086 DOI: 10.1006/Abio.1999.4156 |
0.345 |
|
| 1997 |
Speck SH, Chatlla T, Flemington E. Reactivation of Epstein-Barr virus: Regulation and function of the BZLF1 gene Trends in Microbiology. 5: 399-405. PMID 9351176 DOI: 10.1016/S0966-842X(97)01129-3 |
0.359 |
|
| 1997 |
Campanero MR, Flemington EK. Regulation of E2F through ubiquitin–proteasome-dependent degradation: Stabilization by the pRB tumor suppressor protein Proceedings of the National Academy of Sciences of the United States of America. 94: 2221-2226. PMID 9122175 DOI: 10.1073/Pnas.94.6.2221 |
0.341 |
|
| 1996 |
Cayrol C, Flemington EK. The Epstein-Barr virus bZIP transcription factor Zta causes G0/G1 cell cycle arrest through induction of cyclin-dependent kinase inhibitors. The Embo Journal. 15: 2748-2759. DOI: 10.1002/J.1460-2075.1996.Tb00635.X |
0.362 |
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| 1995 |
Bodor J, Walker W, Flemington E, Spetz AL, Habener JF. Modulation of Tax and PKA-mediated expression of HTLV-I promoter via cAMP response element binding and modulator proteins CREB and CREM. Febs Letters. 377: 413-8. PMID 8549766 DOI: 10.1016/0014-5793(95)01299-0 |
0.322 |
|
| 1995 |
Cayrol C, Flemington EK. Identification of cellular target genes of the Epstein-Barr virus transactivator Zta: activation of transforming growth factor beta igh3 (TGF-beta igh3) and TGF-beta 1. Journal of Virology. 69: 4206-4212. PMID 7769680 DOI: 10.1128/Jvi.69.7.4206-4212.1995 |
0.338 |
|
| 1995 |
Goldfeld AE, Liu P, Liu S, Flemington EK, Strominger JL, Speck SH. Cyclosporin A and FK506 block induction of the Epstein-Barr virus lytic cycle by anti-immunoglobulin Virology. 209: 225-229. PMID 7538254 DOI: 10.1006/Viro.1995.1247 |
0.389 |
|
| 1994 |
Flemington EK, Lytle JP, Cayrol C, Borras AM, Speck SH. DNA-binding-defective mutants of the Epstein-Barr virus lytic switch activator Zta transactivate with altered specificities Molecular and Cellular Biology. 14: 3041-3052. PMID 8164660 DOI: 10.1128/Mcb.14.5.3041 |
0.373 |
|
| 1994 |
Neuman E, Flemington EK, Sellers WR, Kaelin WG. Transcription of the E2F-1 gene is rendered cell cycle dependent by E2F DNA-binding sites within its promoter. Molecular and Cellular Biology. 14: 6607-15. PMID 7935380 DOI: 10.1128/Mcb.14.10.6607 |
0.371 |
|
| 1993 |
Flemington EK, Speck SH, Kaelin WG. E2F-1-mediated transactivation is inhibited by complex formation with the retinoblastoma susceptibility gene product Proceedings of the National Academy of Sciences of the United States of America. 90: 6914-6918. PMID 8346196 DOI: 10.1073/Pnas.90.15.6914 |
0.347 |
|
| 1992 |
Flemington EK, Borras AM, Lytle JP, Speck SH. Characterization of the Epstein-Barr virus BZLF1 protein transactivation domain Journal of Virology. 66: 922-929. PMID 1309920 DOI: 10.1128/Jvi.66.2.922-929.1992 |
0.339 |
|
| 1992 |
Goldfeld AE, Flemington EK, Boussiotis VA, Theodos CM, Titus RG, Strominger JL, Speck SH. Transcription of the tumor necrosis factor α gene is rapidly induced by anti-immunoglobulin and blocked by cyclosporin A and FK506 in human B cells Proceedings of the National Academy of Sciences of the United States of America. 89: 12198-12201. PMID 1281550 DOI: 10.1073/Pnas.89.24.12198 |
0.32 |
|
| 1991 |
Flemington EK, Goldfeld AE, Speck SH. Efficient transcription of the Epstein-Barr virus immediate-early BZLF1 and BRLF1 genes requires protein synthesis Journal of Virology. 65: 7073-7077. PMID 1658397 DOI: 10.1128/Jvi.65.12.7073-7077.1991 |
0.394 |
|
| 1990 |
Flemington E, Speck SH. Epstein-Barr virus BZLF1 trans activator induces the promoter of a cellular cognate gene, c-fos Journal of Virology. 64: 4549-4552. PMID 2166830 DOI: 10.1128/Jvi.64.9.4549-4552.1990 |
0.361 |
|
| 1990 |
Flemington E, Speck SH. Autoregulation of Epstein-Barr virus putative lytic switch gene BZLF1 Journal of Virology. 64: 1227-1232. PMID 2154606 DOI: 10.1128/Jvi.64.3.1227-1232.1990 |
0.367 |
|
| 1990 |
Flemington E, Speck SH. Identification of phorbol ester response elements in the promoter of Epstein-Barr virus putative lytic switch gene BZLF1 Journal of Virology. 64: 1217-1226. PMID 2154605 DOI: 10.1128/Jvi.64.3.1217-1226.1990 |
0.356 |
|
| 1988 |
Austin PJ, Flemington E, Naidu Yandava C, Strominger JL, Speck SH. Complex transcription of the Epstein-Barr virus BamHI fragment H rightward open reading frame 1 (BHRF1) in latently and lytically infected B lymphocytes Proceedings of the National Academy of Sciences of the United States of America. 85: 3678-3682. PMID 2836854 DOI: 10.1073/Pnas.85.11.3678 |
0.389 |
|
| 1987 |
Flemington E, Bradshaw HD, Traina-Dorge V, Slagel V, Deininger PL. Sequence, structure and promoter characterization of the human thymidine kinase gene. Gene. 52: 267-77. PMID 3301530 DOI: 10.1016/0378-1119(87)90053-9 |
0.59 |
|
| 1987 |
Slagel V, Flemington E, Traina-Dorge V, Bradshaw H, Deininger P. Clustering and subfamily relationships of the Alu family in the human genome. Molecular Biology and Evolution. 4: 19-29. PMID 3128713 DOI: 10.1093/Oxfordjournals.Molbev.A040422 |
0.521 |
|
| 1985 |
Heller M, Flemington E, Kieff E, Deininger P. Repeat arrays in cellular DNA related to the Epstein-Barr virus IR3 repeat. Molecular and Cellular Biology. 5: 457-65. PMID 2985954 DOI: 10.1128/Mcb.5.3.457 |
0.56 |
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