| Year |
Citation |
Score |
| 2023 |
Nagy G, Diabate M, Banerjee T, Adamovich AI, Smith N, Jeon H, Dhar S, Liu W, Burgess K, Chung D, Starita LM, Parvin JD. Multiplexed assay of variant effect reveals residues of functional importance in the BRCA1 coiled-coil and serine cluster domains. Plos One. 18: e0293422. PMID 37917606 DOI: 10.1371/journal.pone.0293422 |
0.664 |
|
| 2023 |
Diabate M, Islam MM, Nagy G, Banerjee T, Dhar S, Smith N, Adamovich AI, Starita LM, Parvin JD. DNA repair function scores for 2172 variants in the BRCA1 amino-terminus. Plos Genetics. 19: e1010739. PMID 37578980 DOI: 10.1371/journal.pgen.1010739 |
0.684 |
|
| 2023 |
Diabate M, Islam MM, Nagy G, Banerjee T, Dhar S, Smith N, Adamovich AI, Starita LM, Parvin JD. DNA Repair Function Scores for 2172 Variants in the BRCA1 Amino-Terminus. Biorxiv : the Preprint Server For Biology. PMID 37090572 DOI: 10.1101/2023.04.10.536331 |
0.68 |
|
| 2022 |
Adamovich AI, Diabate M, Banerjee T, Nagy G, Smith N, Duncan K, Mendoza Mendoza E, Prida G, Freitas MA, Starita LM, Parvin JD. The functional impact of BRCA1 BRCT domain variants using multiplexed DNA double-strand break repair assays. American Journal of Human Genetics. PMID 35196514 DOI: 10.1016/j.ajhg.2022.01.019 |
0.677 |
|
| 2019 |
Adamovich AI, Banerjee T, Wingo M, Duncan K, Ning J, Martins Rodrigues F, Huang KL, Lee C, Chen F, Ding L, Parvin JD. Functional analysis of BARD1 missense variants in homology-directed repair and damage sensitivity. Plos Genetics. 15: e1008049. PMID 30925164 DOI: 10.1371/Journal.Pgen.1008049 |
0.44 |
|
| 2018 |
Starita LM, Islam MM, Banerjee T, Adamovich AI, Gullingsrud J, Fields S, Shendure J, Parvin JD. A Multiplex Homology-Directed DNA Repair Assay Reveals the Impact of More Than 1,000 BRCA1 Missense Substitution Variants on Protein Function. American Journal of Human Genetics. PMID 30219179 DOI: 10.1016/J.Ajhg.2018.07.016 |
0.723 |
|
| 2018 |
Adamovich A, Wingo M, Banerjee T, Gardner M, Freitas M, Parvin J. Abstract 1367: BRCA1 and BARD1 protein interactions that are required for DNA repair function Cancer Research. 78: 1367-1367. DOI: 10.1158/1538-7445.Am2018-1367 |
0.601 |
|
| 2017 |
Ando K, Shah AK, Sachdev V, Kleinstiver BP, Taylor-Parker J, Welch MM, Hu Y, Salgia R, White FM, Parvin JD, Ozonoff A, Rameh LE, Joung JK, Bharti AK. Camptothecin resistance is determined by the regulation of topoisomerase I degradation mediated by ubiquitin proteasome pathway. Oncotarget. PMID 28415827 DOI: 10.18632/Oncotarget.16376 |
0.401 |
|
| 2017 |
Martinez AR, Kaul Z, Parvin JD, Groden J. Differential requirements for DNA repair proteins in immortalized cell lines using alternative lengthening of telomere mechanisms. Genes, Chromosomes & Cancer. PMID 28398700 DOI: 10.1002/gcc.22465 |
0.374 |
|
| 2017 |
Batar B, Schrock M, Lee J, Druck T, Ferguson B, Hwan Cho J, Akakpo K, Hagrass H, Heerema N, Xia F, Parvin J, Aldaz M, Huebner K. WWOX-deficiency promotes increased survival by enhancing homology-directed repair European Journal of Cancer. 72: S148-S149. DOI: 10.1016/S0959-8049(17)30562-2 |
0.307 |
|
| 2016 |
Schrock MS, Batar B, Lee J, Druck T, Ferguson B, Cho JH, Akakpo K, Hagrass H, Heerema NA, Xia F, Parvin JD, Aldaz CM, Huebner K. Wwox-Brca1 interaction: role in DNA repair pathway choice. Oncogene. PMID 27869163 DOI: 10.1038/Onc.2016.389 |
0.386 |
|
| 2016 |
Palmieri D, Scarpa M, Tessari A, Uka R, Amari F, Lee C, Richmond T, Foray C, Sheetz T, Braddom A, Burd CE, Parvin JD, Ludwig T, Croce CM, Coppola V. Ran Binding Protein 9 (RanBP9) is a novel mediator of cellular DNA damage response in lung cancer cells. Oncotarget. PMID 26943034 DOI: 10.18632/Oncotarget.7813 |
0.419 |
|
| 2016 |
Nair SJ, Zhang X, Chiang HC, Jahid MJ, Wang Y, Garza P, April C, Salathia N, Banerjee T, Alenazi FS, Ruan J, Fan JB, Parvin JD, Jin VX, Hu Y, et al. Genetic suppression reveals DNA repair-independent antagonism between BRCA1 and COBRA1 in mammary gland development. Nature Communications. 7: 10913. PMID 26941120 DOI: 10.1038/Ncomms10913 |
0.518 |
|
| 2015 |
Lee C, Banerjee T, Gillespie J, Ceravolo A, Parvinsmith MR, Starita LM, Fields S, Toland AE, Parvin JD. Functional Analysis of BARD1 Missense Variants in Homology-Directed Repair of DNA Double Strand Breaks. Human Mutation. 36: 1205-14. PMID 26350354 DOI: 10.1002/Humu.22902 |
0.701 |
|
| 2015 |
Starita LM, Young DL, Islam M, Kitzman JO, Gullingsrud J, Hause RJ, Fowler DM, Parvin JD, Shendure J, Fields S. Massively Parallel Functional Analysis of BRCA1 RING Domain Variants. Genetics. 200: 413-22. PMID 25823446 DOI: 10.1534/Genetics.115.175802 |
0.647 |
|
| 2015 |
Liu HW, Banerjee T, Guan X, Freitas MA, Parvin JD. The chromatin scaffold protein SAFB1 localizes SUMO-1 to the promoters of ribosomal protein genes to facilitate transcription initiation and splicing. Nucleic Acids Research. 43: 3605-13. PMID 25800734 DOI: 10.1093/Nar/Gkv246 |
0.381 |
|
| 2015 |
Shah AK, Sachdew V, Taylor-Parker J, Tapan U, Tohme YH, Malinkovich Y, Tran B, Gibbs P, Salgia R, White FM, Parvin J, Bharti A. Effect of DNA-PK dependent phosphorylation of topo-I-S10 on its rate of proteasomal degradation and CPT response. Journal of Clinical Oncology. 33: 606-606. DOI: 10.1200/Jco.2015.33.3_Suppl.606 |
0.447 |
|
| 2015 |
Palmieri D, Scarpa M, Tessari A, Uka R, Amari F, Lee C, Richmond T, Sheetz T, Parvin J, Ludwig T, Croce CM, Coppola V. Abstract LB-164: Ran Binding Protein 9 (RanBP9) is a novel mediator of cellular DNA damage response in lung cancer cells Cancer Research. 75. DOI: 10.1158/1538-7445.Am2015-Lb-164 |
0.478 |
|
| 2015 |
Huang K, Wang J, Cao S, Xie M, Jayasinghe R, Ning J, McLellan M, Wendl M, Scott A, Johnson K, Davies S, Fenyö D, Townsend R, Chen F, Parvin J, et al. Abstract 1939: Discovery and proteogenomic investigation of genetic variants in human cancers Cancer Research. 75: 1939-1939. DOI: 10.1158/1538-7445.Am2015-1939 |
0.367 |
|
| 2014 |
Hu Y, Wang C, Huang K, Xia F, Parvin JD, Mondal N. Regulation of 53BP1 protein stability by RNF8 and RNF168 is important for efficient DNA double-strand break repair. Plos One. 9: e110522. PMID 25337968 DOI: 10.1371/journal.pone.0110522 |
0.385 |
|
| 2014 |
Acharya S, Kaul Z, Gocha AS, Martinez AR, Harris J, Parvin JD, Groden J. Association of BLM and BRCA1 during Telomere Maintenance in ALT Cells. Plos One. 9: e103819. PMID 25084169 DOI: 10.1371/journal.pone.0103819 |
0.415 |
|
| 2014 |
Hu Y, Parvin JD. Small ubiquitin-like modifier (SUMO) isoforms and conjugation-independent function in DNA double-strand break repair pathways. The Journal of Biological Chemistry. 289: 21289-95. PMID 24966330 DOI: 10.1074/jbc.C114.582122 |
0.418 |
|
| 2014 |
Kotian S, Banerjee T, Lockhart A, Huang K, Catalyurek UV, Parvin JD. NUSAP1 influences the DNA damage response by controlling BRCA1 protein levels. Cancer Biology & Therapy. 15: 533-43. PMID 24521615 DOI: 10.4161/Cbt.28019 |
0.465 |
|
| 2013 |
Tian F, Sharma S, Zou J, Lin SY, Wang B, Rezvani K, Wang H, Parvin JD, Ludwig T, Canman CE, Zhang D. BRCA1 promotes the ubiquitination of PCNA and recruitment of translesion polymerases in response to replication blockade. Proceedings of the National Academy of Sciences of the United States of America. 110: 13558-63. PMID 23901102 DOI: 10.1073/Pnas.1306534110 |
0.509 |
|
| 2013 |
Wang J, Lan X, Hsu PY, Hsu HK, Huang K, Parvin J, Huang TH, Jin VX. Genome-wide analysis uncovers high frequency, strong differential chromosomal interactions and their associated epigenetic patterns in E2-mediated gene regulation. Bmc Genomics. 14: 70. PMID 23368971 DOI: 10.1186/1471-2164-14-70 |
0.317 |
|
| 2013 |
Towler WI, Zhang J, Ransburgh DJ, Toland AE, Ishioka C, Chiba N, Parvin JD. Analysis of BRCA1 variants in double-strand break repair by homologous recombination and single-strand annealing. Human Mutation. 34: 439-45. PMID 23161852 DOI: 10.1002/Humu.22251 |
0.46 |
|
| 2012 |
Kais Z, Chiba N, Ishioka C, Parvin JD. Functional differences among BRCA1 missense mutations in the control of centrosome duplication Oncogene. 31: 799-804. PMID 21725363 DOI: 10.1038/onc.2011.271 |
0.33 |
|
| 2011 |
Wei L, Lan L, Yasui A, Tanaka K, Saijo M, Matsuzawa A, Kashiwagi R, Maseki E, Hu Y, Parvin JD, Ishioka C, Chiba N. BRCA1 contributes to transcription-coupled repair of DNA damage through polyubiquitination and degradation of Cockayne syndrome B protein. Cancer Science. 102: 1840-7. PMID 21756275 DOI: 10.1111/j.1349-7006.2011.02037.x |
0.49 |
|
| 2011 |
Kais Z, Barsky SH, Mathsyaraja H, Zha A, Ransburgh DJ, He G, Pilarski RT, Shapiro CL, Huang K, Parvin JD. KIAA0101 interacts with BRCA1 and regulates centrosome number. Molecular Cancer Research : McR. 9: 1091-9. PMID 21673012 DOI: 10.1158/1541-7786.MCR-10-0503 |
0.412 |
|
| 2011 |
Parvin J, Chiba N, Ransburgh D. Identifying the effects of BRCA1 mutations on homologous recombination using cells that express endogenous wild-type BRCA1. Journal of Visualized Experiments : Jove. PMID 21372787 DOI: 10.3791/2468 |
0.458 |
|
| 2011 |
Lyakhovich A, Ramirez MJ, Castellanos A, Castella M, Simons AM, Parvin JD, Surralles J. Fanconi anemia protein FANCD2 inhibits TRF1 polyADP-ribosylation through tankyrase1-dependent manner. Genome Integrity. 2: 4. PMID 21314979 DOI: 10.1186/2041-9414-2-4 |
0.781 |
|
| 2010 |
Gu F, Hsu HK, Hsu PY, Wu J, Ma Y, Parvin J, Huang TH, Jin VX. Inference of hierarchical regulatory network of estrogen-dependent breast cancer through ChIP-based data. Bmc Systems Biology. 4: 170. PMID 21167036 DOI: 10.1186/1752-0509-4-170 |
0.365 |
|
| 2010 |
Hammond-Martel I, Pak H, Yu H, Rouget R, Horwitz AA, Parvin JD, Drobetsky EA, Affar el B. PI 3 kinase related kinases-independent proteolysis of BRCA1 regulates Rad51 recruitment during genotoxic stress in human cells. Plos One. 5: e14027. PMID 21103343 DOI: 10.1371/Journal.Pone.0014027 |
0.795 |
|
| 2010 |
Lamber EP, Horwitz AA, Parvin JD. BRCA1 represses amphiregulin gene expression. Cancer Research. 70: 996-1005. PMID 20103632 DOI: 10.1158/0008-5472.Can-09-2842 |
0.776 |
|
| 2010 |
Ransburgh DJ, Chiba N, Ishioka C, Toland AE, Parvin JD. Identification of breast tumor mutations in BRCA1 that abolish its function in homologous DNA recombination. Cancer Research. 70: 988-95. PMID 20103620 DOI: 10.1158/0008-5472.Can-09-2850 |
0.434 |
|
| 2010 |
Thakar A, Parvin J, Zlatanova J. BRCA1/BARD1 E3 ubiquitin ligase can modify histones H2A and H2B in the nucleosome particle. Journal of Biomolecular Structure & Dynamics. 27: 399-406. PMID 19916563 DOI: 10.1080/07391102.2010.10507326 |
0.348 |
|
| 2009 |
Johnson N, Cai D, Kennedy RD, Pathania S, Arora M, Li YC, D'Andrea AD, Parvin JD, Shapiro GI. Cdk1 participates in BRCA1-dependent S phase checkpoint control in response to DNA damage. Molecular Cell. 35: 327-39. PMID 19683496 DOI: 10.1016/J.Molcel.2009.06.036 |
0.4 |
|
| 2009 |
Taslim C, Wu J, Yan P, Singer G, Parvin J, Huang T, Lin S, Huang K. Comparative study on ChIP-seq data: normalization and binding pattern characterization. Bioinformatics (Oxford, England). 25: 2334-40. PMID 19561022 DOI: 10.1093/Bioinformatics/Btp384 |
0.31 |
|
| 2009 |
Parvin JD. The BRCA1-dependent ubiquitin ligase, gamma-tubulin, and centrosomes. Environmental and Molecular Mutagenesis. 50: 649-53. PMID 19274767 DOI: 10.1002/em.20475 |
0.4 |
|
| 2009 |
Bozdaǧ D, Parvin JD, Catalyurek UV. A biclustering method to discover co-regulated genes using diverse gene expression datasets Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5462: 151-163. DOI: 10.1007/978-3-642-00727-9_16 |
0.348 |
|
| 2008 |
Kais Z, Parvin JD. Regulation of centrosomes by the BRCA1-dependent ubiquitin ligase. Cancer Biology & Therapy. 7: 1540-3. PMID 18927495 |
0.327 |
|
| 2008 |
Heine GF, Horwitz AA, Parvin JD. Multiple mechanisms contribute to inhibit transcription in response to DNA damage. The Journal of Biological Chemistry. 283: 9555-61. PMID 18281289 DOI: 10.1074/Jbc.M707700200 |
0.781 |
|
| 2007 |
Sankaran S, Crone DE, Palazzo RE, Parvin JD. BRCA1 regulates gamma-tubulin binding to centrosomes. Cancer Biology & Therapy. 6: 1853-7. PMID 18087219 DOI: 10.4161/Cbt.6.12.5164 |
0.391 |
|
| 2007 |
Sankaran S, Crone DE, Palazzo RE, Parvin JD. Aurora-A kinase regulates breast cancer associated gene 1 inhibition of centrosome-dependent microtubule nucleation. Cancer Research. 67: 11186-94. PMID 18056443 DOI: 10.1158/0008-5472.Can-07-2578 |
0.34 |
|
| 2007 |
Pujana MA, Han JD, Starita LM, Stevens KN, Tewari M, Ahn JS, Rennert G, Moreno V, Kirchhoff T, Gold B, Assmann V, Elshamy WM, Rual JF, Levine D, Rozek LS, ... ... Parvin JD, et al. Network modeling links breast cancer susceptibility and centrosome dysfunction. Nature Genetics. 39: 1338-49. PMID 17922014 DOI: 10.1038/Ng.2007.2 |
0.625 |
|
| 2007 |
Heine GF, Parvin JD. BRCA1 control of steroid receptor ubiquitination. Science's Stke : Signal Transduction Knowledge Environment. 2007: pe34. PMID 17579243 DOI: 10.1126/Stke.3912007Pe34 |
0.365 |
|
| 2007 |
Horwitz AA, Affar el B, Heine GF, Shi Y, Parvin JD. A mechanism for transcriptional repression dependent on the BRCA1 E3 ubiquitin ligase. Proceedings of the National Academy of Sciences of the United States of America. 104: 6614-9. PMID 17420471 DOI: 10.1073/Pnas.0610481104 |
0.786 |
|
| 2006 |
Parvin JD, Sankaran S. The BRCA1 E3 ubiquitin ligase controls centrosome dynamics. Cell Cycle (Georgetown, Tex.). 5: 1946-50. PMID 16969086 |
0.369 |
|
| 2006 |
Sankaran S, Parvin JD. Centrosome function in normal and tumor cells. Journal of Cellular Biochemistry. 99: 1240-50. PMID 16817224 DOI: 10.1002/jcb.21003 |
0.31 |
|
| 2006 |
Toretsky JA, Erkizan V, Levenson A, Abaan OD, Parvin JD, Cripe TP, Rice AM, Lee SB, Uren A. Oncoprotein EWS-FLI1 activity is enhanced by RNA helicase A. Cancer Research. 66: 5574-81. PMID 16740692 DOI: 10.1158/0008-5472.Can-05-3293 |
0.311 |
|
| 2006 |
Sankaran S, Starita LM, Simons AM, Parvin JD. Identification of domains of BRCA1 critical for the ubiquitin-dependent inhibition of centrosome function. Cancer Research. 66: 4100-7. PMID 16618730 DOI: 10.1158/0008-5472.Can-05-4430 |
0.78 |
|
| 2006 |
Simons AM, Horwitz AA, Starita LM, Griffin K, Williams RS, Glover JN, Parvin JD. BRCA1 DNA-binding activity is stimulated by BARD1. Cancer Research. 66: 2012-8. PMID 16489000 DOI: 10.1158/0008-5472.Can-05-3296 |
0.753 |
|
| 2006 |
Starita LM, Parvin JD. Substrates of the BRCA1-dependent ubiquitin ligase. Cancer Biology & Therapy. 5: 137-41. PMID 16479151 DOI: 10.4161/Cbt.5.2.2479 |
0.657 |
|
| 2006 |
Horwitz AA, Sankaran S, Parvin JD. Direct stimulation of transcription initiation by BRCA1 requires both its amino and carboxyl termini. The Journal of Biological Chemistry. 281: 8317-20. PMID 16473884 DOI: 10.1074/Jbc.C500475200 |
0.761 |
|
| 2005 |
Takeda DY, Shibata Y, Parvin JD, Dutta A. Recruitment of ORC or CDC6 to DNA is sufficient to create an artificial origin of replication in mammalian cells. Genes & Development. 19: 2827-36. PMID 16322558 DOI: 10.1101/Gad.1369805 |
0.438 |
|
| 2005 |
Sankaran S, Starita LM, Groen AC, Ko MJ, Parvin JD. Centrosomal microtubule nucleation activity is inhibited by BRCA1-dependent ubiquitination. Molecular and Cellular Biology. 25: 8656-68. PMID 16166645 DOI: 10.1128/Mcb.25.19.8656-8668.2005 |
0.676 |
|
| 2005 |
Starita LM, Horwitz AA, Keogh MC, Ishioka C, Parvin JD, Chiba N. BRCA1/BARD1 ubiquitinate phosphorylated RNA polymerase II. The Journal of Biological Chemistry. 280: 24498-505. PMID 15886201 DOI: 10.1074/Jbc.M414020200 |
0.8 |
|
| 2005 |
Park WH, Margossian S, Horwitz AA, Simons AM, D'Andrea AD, Parvin JD. Direct DNA binding activity of the Fanconi anemia D2 protein. The Journal of Biological Chemistry. 280: 23593-8. PMID 15849361 DOI: 10.1074/Jbc.M503730200 |
0.75 |
|
| 2005 |
Pujana M, Han J, Starita L, Tewari M, Ahn J, Assmann V, ElShamy W, Rual J, Gelman R, Gunsalus K, Greenberg R, Bohian B, Bertin N, Ayivi-Guedehoussou N, Nathanson K, ... ... Parvin J, et al. A model of the BRCA1/BRCA2 network Breast Cancer Research. 7: 1-1. DOI: 10.1186/Bcr1195 |
0.674 |
|
| 2004 |
Starita LM, Machida Y, Sankaran S, Elias JE, Griffin K, Schlegel BP, Gygi SP, Parvin JD. BRCA1-dependent ubiquitination of gamma-tubulin regulates centrosome number. Molecular and Cellular Biology. 24: 8457-66. PMID 15367667 DOI: 10.1128/Mcb.24.19.8457-8466.2004 |
0.664 |
|
| 2004 |
Parvin JD. Overview of history and progress in BRCA1 research: the first BRCA1 decade. Cancer Biology & Therapy. 3: 505-8. PMID 15197353 |
0.476 |
|
| 2004 |
You F, Chiba N, Ishioka C, Parvin JD. Expression of an amino-terminal BRCA1 deletion mutant causes a dominant growth inhibition in MCF10A cells. Oncogene. 23: 5792-8. PMID 15122325 DOI: 10.1038/sj.onc.1207739 |
0.306 |
|
| 2003 |
Mondal N, Parvin JD. Transcription from the perspective of the DNA: twists and bumps in the road. Critical Reviews in Eukaryotic Gene Expression. 13: 1-8. PMID 12839093 |
0.381 |
|
| 2003 |
Starita LM, Parvin JD. The multiple nuclear functions of BRCA1: transcription, ubiquitination and DNA repair. Current Opinion in Cell Biology. 15: 345-50. PMID 12787778 DOI: 10.1016/S0955-0674(03)00042-5 |
0.736 |
|
| 2003 |
Schlegel BP, Starita LM, Parvin JD. Overexpression of a protein fragment of RNA helicase A causes inhibition of endogenous BRCA1 function and defects in ploidy and cytokinesis in mammary epithelial cells. Oncogene. 22: 983-91. PMID 12592385 DOI: 10.1038/Sj.Onc.1206195 |
0.742 |
|
| 2002 |
Chiba N, Parvin JD. The BRCA1 and BARD1 association with the RNA polymerase II holoenzyme. Cancer Research. 62: 4222-8. PMID 12154023 |
0.364 |
|
| 1999 |
Haile DT, Parvin JD. Activation of transcription in vitro by the BRCA1 carboxyl-terminal domain Journal of Biological Chemistry. 274: 2113-2117. PMID 9890972 DOI: 10.1074/jbc.274.4.2113 |
0.452 |
|
| 1998 |
Anderson SF, Schlegel BP, Nakajima T, Wolpin ES, Parvin JD. BRCA1 protein is linked to the RNA polymerase II holoenzyme complex via RNA helicase A. Nature Genetics. 19: 254-6. PMID 9662397 DOI: 10.1038/930 |
0.414 |
|
| 1998 |
Saha P, Chen J, Thome KC, Lawlis SJ, Hou ZH, Hendricks M, Parvin JD, Dutta A. Human CDC6/Cdc18 associates with Orc1 and cyclin-cdk and is selectively eliminated from the nucleus at the onset of S phase. Molecular and Cellular Biology. 18: 2758-67. PMID 9566895 DOI: 10.1128/Mcb.18.5.2758 |
0.322 |
|
| 1998 |
Neish AS, Anderson SF, Schlegel BP, Wei W, Parvin JD. Factors associated with the mammalian RNA polymerase II holoenzyme. Nucleic Acids Research. 26: 847-53. PMID 9443979 DOI: 10.1093/Nar/26.3.847 |
0.332 |
|
| 1997 |
Scully R, Anderson SF, Chao DM, Wei W, Ye L, Young RA, Livingston DM, Parvin JD. BRCA1 is a component of the RNA polymerase II holoenzyme. Proceedings of the National Academy of Sciences of the United States of America. 94: 5605-10. PMID 9159119 DOI: 10.1073/Pnas.94.11.5605 |
0.382 |
|
| 1993 |
Parvin JD, Sharp PA. DNA topology and a minimal set of basal factors for transcription by RNA polymerase II. Cell. 73: 533-40. PMID 8490964 DOI: 10.1016/0092-8674(93)90140-L |
0.312 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2017 |
Liu H, Dowdle JA, Khurshid S, Sullivan NJ, Bertos N, Rambani K, Mair M, Daniel P, Wheeler E, Tang X, Toth K, Lause M, Harrigan ME, Eiring K, Sullivan C, ... ... Parvin JD, et al. Discovery of Stromal Regulatory Networks that Suppress Ras-Sensitized Epithelial Cell Proliferation. Developmental Cell. 41: 392-407.e6. PMID 28535374 DOI: 10.1016/J.Devcel.2017.04.024 |
0.3 |
|
| 2021 |
Moustafa D, Elwahed MRA, Elsaid HH, Parvin JD. Modulation of Early Mitotic Inhibitor 1 (EMI1) depletion on the sensitivity of PARP inhibitors in BRCA1 mutated triple-negative breast cancer cells. Plos One. 16: e0235025. PMID 33412559 DOI: 10.1371/journal.pone.0235025 |
0.299 |
|
| 2001 |
Chiba N, Parvin JD. Redistribution of BRCA1 among four different protein complexes following replication blockage. The Journal of Biological Chemistry. 276: 38549-54. PMID 11504724 DOI: 10.1074/JBC.M105227200 |
0.299 |
|
| 1998 |
Qiu XB, Lin YL, Thome KC, Pian P, Schlegel BP, Weremowicz S, Parvin JD, Dutta A. An eukaryotic RuvB-like protein (RUVBL1) essential for growth. The Journal of Biological Chemistry. 273: 27786-93. PMID 9774387 DOI: 10.1074/Jbc.273.43.27786 |
0.296 |
|
| 1996 |
Kim J, Parvin JD, Shykind BM, Sharp PA. A negative cofactor containing Dr1/p19 modulates transcription with TFIIA in a promoter-specific fashion. The Journal of Biological Chemistry. 271: 18405-12. PMID 8702484 DOI: 10.1074/jbc.271.31.18405 |
0.281 |
|
| 2006 |
Ko MJ, Murata K, Hwang DS, Parvin JD. Inhibition of BRCA1 in breast cell lines causes the centrosome duplication cycle to be disconnected from the cell cycle Oncogene. 25: 298-303. PMID 16170356 DOI: 10.1038/sj.onc.1209028 |
0.272 |
|
| 2001 |
Mondal N, Parvin JD. DNA topoisomerase IIalpha is required for RNA polymerase II transcription on chromatin templates. Nature. 413: 435-8. PMID 11574892 DOI: 10.1038/35096590 |
0.271 |
|
| 2016 |
Nuro-Gyina PK, Parvin JD. Roles for SUMO in pre-mRNA processing. Wiley Interdisciplinary Reviews. Rna. 7: 105-12. PMID 26563097 DOI: 10.1002/wrna.1318 |
0.271 |
|
| 2004 |
Zhang Y, Griffin K, Mondal N, Parvin JD. Phosphorylation of histone H2A inhibits transcription on chromatin templates. The Journal of Biological Chemistry. 279: 21866-72. PMID 15010469 DOI: 10.1074/jbc.M400099200 |
0.264 |
|
| 2012 |
Liu HW, Zhang J, Heine GF, Arora M, Gulcin Ozer H, Onti-Srinivasan R, Huang K, Parvin JD. Chromatin modification by SUMO-1 stimulates the promoters of translation machinery genes. Nucleic Acids Research. 40: 10172-86. PMID 22941651 DOI: 10.1093/Nar/Gks819 |
0.264 |
|
| 2017 |
Islam MM, Banerjee T, Packard CZ, Kotian S, Selvendiran K, Cohn DE, Parvin JD. HDAC10 as a potential therapeutic target in ovarian cancer. Gynecologic Oncology. PMID 28073598 DOI: 10.1016/j.ygyno.2017.01.009 |
0.26 |
|
| 2012 |
Zhang J, Parvin J, Huang K. Redistribution of H3K4me2 on neural tissue specific genes during mouse brain development. Bmc Genomics. 13: S5. PMID 23281639 DOI: 10.1186/1471-2164-13-S8-S5 |
0.26 |
|
| 2005 |
Mondal N, Parvin JD. The tumor suppressor protein p53 functions similarly to p63 and p73 in activating transcription in vitro. Cancer Biology & Therapy. 4: 414-8. PMID 15846087 |
0.248 |
|
| 2012 |
Arora M, Zhang J, Heine GF, Ozer G, Liu HW, Huang K, Parvin JD. Promoters active in interphase are bookmarked during mitosis by ubiquitination. Nucleic Acids Research. 40: 10187-202. PMID 22941662 DOI: 10.1093/Nar/Gks820 |
0.248 |
|
| 2019 |
Adamovich A, Parvin J. Characterizing BRCA1 Variants Using Multiplex Functional Assays Archives of Applied Medicine. 1. DOI: 10.18103/AOAM.V1I1.25 |
0.245 |
|
| 1997 |
Nakajima T, Uchida C, Anderson SF, Parvin JD, Montminy M. Analysis of a cAMP-responsive activator reveals a two-component mechanism for transcriptional induction via signal-dependent factors. Genes & Development. 11: 738-47. PMID 9087428 DOI: 10.1101/Gad.11.6.738 |
0.24 |
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| 1992 |
Parvin JD, Timmers HT, Sharp PA. Promoter specificity of basal transcription factors. Cell. 68: 1135-44. PMID 1547507 DOI: 10.1016/0092-8674(92)90084-P |
0.239 |
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| 2011 |
Kotian S, Liyanarachchi S, Zelent A, Parvin JD. Histone deacetylases 9 and 10 are required for homologous recombination. The Journal of Biological Chemistry. 286: 7722-6. PMID 21247901 DOI: 10.1074/jbc.C110.194233 |
0.235 |
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| 2000 |
Schlegel BP, Green VJ, Ladias JA, Parvin JD. BRCA1 interaction with RNA polymerase II reveals a role for hRPB2 and hRPB10alpha in activated transcription. Proceedings of the National Academy of Sciences of the United States of America. 97: 3148-53. PMID 10725406 DOI: 10.1073/pnas.070452397 |
0.232 |
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| 2015 |
Lu C, Xie M, Wendl MC, Wang J, McLellan MD, Leiserson MD, Huang KL, Wyczalkowski MA, Jayasinghe R, Banerjee T, Ning J, Tripathi P, Zhang Q, Niu B, Ye K, ... ... Parvin JD, et al. Patterns and functional implications of rare germline variants across 12 cancer types. Nature Communications. 6: 10086. PMID 26689913 DOI: 10.1038/Ncomms10086 |
0.231 |
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| 2016 |
Zhang J, Abrams Z, Parvin JD, Huang K. Integrative analysis of somatic mutations and transcriptomic data to functionally stratify breast cancer patients. Bmc Genomics. 17: 513. PMID 27556157 DOI: 10.1186/s12864-016-2902-0 |
0.231 |
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| 2015 |
Arora M, Packard CZ, Banerjee T, Parvin JD. RING1A and BMI1 bookmark active genes via ubiquitination of chromatin-associated proteins. Nucleic Acids Research. PMID 26578590 DOI: 10.1093/nar/gkv1223 |
0.229 |
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| 2003 |
Mondal N, Zhang Y, Jonsson Z, Dhar SK, Kannapiran M, Parvin JD. Elongation by RNA polymerase II on chromatin templates requires topoisomerase activity. Nucleic Acids Research. 31: 5016-24. PMID 12930951 |
0.228 |
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| 1997 |
Nakajima T, Uchida C, Anderson SF, Chee-Gun L, Hurwitz J, Parvin JD, Montminy M. RNA helicase A mediates association of CBP with RNA polymerase II Cell. 90: 1107-1112. PMID 9323138 DOI: 10.1016/S0092-8674(00)80376-1 |
0.22 |
|
| 2004 |
Bourbon HM, Aguilera A, Ansari AZ, Asturias FJ, Berk AJ, Bjorklund S, Blackwell TK, Borggrefe T, Carey M, Carlson M, Conaway JW, Conaway RC, Emmons SW, Fondell JD, Freedman LP, ... ... Parvin JD, et al. A unified nomenclature for protein subunits of mediator complexes linking transcriptional regulators to RNA polymerase II. Molecular Cell. 14: 553-7. PMID 15175151 DOI: 10.1016/J.Molcel.2004.05.011 |
0.219 |
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| 1986 |
Parvin JD, Smith FI, Palese P. Rapid RNA sequencing using double-stranded template DNA, SP6 polymerase, and 3'-deoxynucleotide triphosphates Dna (Mary Ann Liebert, Inc.). 5: 167-171. PMID 2423310 |
0.218 |
|
| 2012 |
Zhang J, Lu K, Xiang Y, Islam M, Kotian S, Kais Z, Lee C, Arora M, Liu HW, Parvin JD, Huang K. Weighted frequent gene co-expression network mining to identify genes involved in genome stability. Plos Computational Biology. 8: e1002656. PMID 22956898 DOI: 10.1371/journal.pcbi.1002656 |
0.218 |
|
| 2012 |
Liebner DA, Parvin J, Huang K. Identification of novel melanoma gene expression signatures using a Bayesian approach to filter out gene expression noise from normal tissues. Journal of Clinical Oncology. 30. DOI: 10.1200/Jco.2012.30.15_Suppl.E19053 |
0.216 |
|
| 1996 |
Chao DM, Gadbois EL, Murray PJ, Anderson SF, Sonu MS, Parvin JD, Young RA. A mammalian SRB protein associated with an RNA polymerase II holoenzyme. Nature. 380: 82-5. PMID 8598913 DOI: 10.1038/380082a0 |
0.212 |
|
| 1995 |
Mäkelä TP, Parvin JD, Kim J, Huber LJ, Sharp PA, Weinberg RA. A kinase-deficient transcription factor TFIIH is functional in basal and activated transcription. Proceedings of the National Academy of Sciences of the United States of America. 92: 5174-8. PMID 7761469 DOI: 10.1073/Pnas.92.11.5174 |
0.202 |
|
| 2000 |
Schlegel BP, Green VJ, Ladias JAA, Parvin JD. BRCA1 interaction with RNA polymerase II reveals a role for hRPB2 and hRPB10 in activated transcription Proceedings of the National Academy of Sciences. 97: 3148-3153. DOI: 10.1073/PNAS.97.7.3148 |
0.201 |
|
| 1998 |
Parvin JD, Young RA. Regulatory targets in the RNA polymerase II holoenzyme. Current Opinion in Genetics & Development. 8: 565-70. PMID 9794828 DOI: 10.1016/S0959-437X(98)80012-9 |
0.201 |
|
| 2015 |
Hatem A, Kaya K, Parvin J, Huang K, Çatalyürek ÜV. MICA: MicroRNA Integration for active module discovery Bcb 2015 - 6th Acm Conference On Bioinformatics, Computational Biology, and Health Informatics. 136-145. DOI: 10.1145/2808719.2808733 |
0.195 |
|
| 2011 |
Ozer HG, Huang YW, Wu J, Parvin JD, Huang TH, Huang K. Comparing multiple ChIP-sequencing experiments. Journal of Bioinformatics and Computational Biology. 9: 269-82. PMID 21523932 DOI: 10.1142/S0219720011005483 |
0.195 |
|
| 2002 |
Parvin JD. Creating a tool-kit for exploring BRCA1 function. Cancer Biology & Therapy. 1: 509-10. PMID 12496478 |
0.189 |
|
| 2019 |
Adamovich AI, Toland AE, Parvin JD. F-Box Protein-Mediated Resistance to PARP Inhibitor Therapy. Molecular Cell. 73: 195-196. PMID 30658107 DOI: 10.1016/J.Molcel.2018.12.019 |
0.181 |
|
| 1984 |
Parvin JD, Wang LH. Mechanisms for the generation of src-deletion mutants and recovered sarcoma viruses: identification of viral sequences involved in src deletions and in recombination with c-src sequences. Virology. 138: 236-45. PMID 6093366 DOI: 10.1016/0042-6822(84)90348-9 |
0.175 |
|
| 2013 |
Zhang J, Ni S, Xiang Y, Parvin JD, Yang Y, Zhou Y, Huang K. Gene Co-expression analysis predicts genetic aberration loci associated with colon cancer metastasis. International Journal of Computational Biology and Drug Design. 6: 60-71. PMID 23428474 DOI: 10.1504/IJCBDD.2013.052202 |
0.168 |
|
| 2005 |
Takeda DY, Parvin JD, Dutta A. Degradation of Cdt1 during S phase is Skp2-independent and is required for efficient progression of mammalian cells through S phase. The Journal of Biological Chemistry. 280: 23416-23. PMID 15855168 DOI: 10.1074/Jbc.M501208200 |
0.156 |
|
| 2000 |
Chiba N, Suldan Z, Freedman LP, Parvin JD. Binding of liganded vitamin D receptor to the vitamin D receptor interacting protein coactivator complex induces interaction with RNA polymerase II holoenzyme. The Journal of Biological Chemistry. 275: 10719-22. PMID 10753860 DOI: 10.1074/JBC.275.15.10719 |
0.156 |
|
| 1986 |
Smith FI, Parvin JD, Palese P. Detection of single base substitutions in influenza virus RNA molecules by denaturing gradient gel electrophoresis of RNA-RNA or DNA-RNA heteroduplexes Virology. 150: 55-64. PMID 3952989 DOI: 10.1016/0042-6822(86)90265-5 |
0.146 |
|
| 1983 |
Parvin JD, Young JF, Palese P. Nonsense mutations affecting the lengths of the NS1 nonstructural proteins of influenza A virus isolates Virology. 128: 512-517. PMID 6612993 DOI: 10.1016/0042-6822(83)90280-5 |
0.145 |
|
| 2001 |
Parvin JD. BRCA1 at a branch point. Proceedings of the National Academy of Sciences of the United States of America. 98: 5952-4. PMID 11371630 DOI: 10.1073/PNAS.121184998 |
0.142 |
|
| 2011 |
Zhang J, Knobloch T, Parvin J, Weghorst C, Huang K. Identifying smoking associated gene co-expression networks related to oral cancer initiation 2011 Ieee International Conference On Bioinformatics and Biomedicine Workshops, Bibmw 2011. 1039-1041. DOI: 10.1109/BIBMW.2011.6112553 |
0.128 |
|
| 1990 |
Luytjes W, Krystal M, Enami M, Parvin JD, Palese P. Amplification, expression, and packaging of foreign gene by influenza virus. Cell. 59: 1107-13. PMID 2598262 DOI: 10.1016/0092-8674(89)90766-6 |
0.123 |
|
| 2013 |
Webb A, Papp AC, Sanford JC, Huang K, Parvin JD, Sadee W. Expression of mRNA transcripts encoding membrane transporters detected with whole transcriptome sequencing of human brain and liver. Pharmacogenetics and Genomics. 23: 269-78. PMID 23492907 DOI: 10.1097/FPC.0b013e32835ff536 |
0.115 |
|
| 1989 |
Parvin JD, Palese P, Honda A, Ishihama A, Krystal M. Promoter analysis of influenza virus RNA polymerase. Journal of Virology. 63: 5142-5152. DOI: 10.1128/Jvi.63.12.5142-5152.1989 |
0.115 |
|
| 2012 |
Ozer HG, Parvin JD, Huang K. DFI: gene feature discovery in RNA-seq experiments from multiple sources. Bmc Genomics. 13: S11. PMID 23281963 DOI: 10.1186/1471-2164-13-S8-S11 |
0.101 |
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| 1987 |
Hsu MT, Parvin JD, Gupta S, Krystal M, Palese P. Genomic RNAs of influenza viruses are held in a circular conformation in virions and in infected cells by a terminal panhandle. Proceedings of the National Academy of Sciences of the United States of America. 84: 8140-4. PMID 2446318 DOI: 10.1073/Pnas.84.22.8140 |
0.097 |
|
| 2006 |
Kontopoulos E, Parvin JD, Feany MB. Alpha-synuclein acts in the nucleus to inhibit histone acetylation and promote neurotoxicity. Human Molecular Genetics. 15: 3012-23. PMID 16959795 DOI: 10.1093/Hmg/Ddl243 |
0.094 |
|
| 1986 |
Buonagurio DA, Nakada S, Parvin JD, Krystal M, Palese P, Fitch WM. Evolution of human influenza A viruses over 50 years: Rapid, uniform rate of change in NS gene Science. 232: 980-982. PMID 2939560 DOI: 10.1126/Science.2939560 |
0.089 |
|
| 2014 |
Liebner DA, Huang K, Parvin JD. MMAD: microarray microdissection with analysis of differences is a computational tool for deconvoluting cell type-specific contributions from tissue samples. Bioinformatics (Oxford, England). 30: 682-9. PMID 24085566 DOI: 10.1093/bioinformatics/btt566 |
0.087 |
|
| 2014 |
Webb A, Albin A, Ye Z, Rastegar-Mojarad M, Huang K, Parvin J, Sadee W, Li L, Lin S, Xiang Y. Mining massive SNP data for identifying associated SNPs and uncovering gene relationships Acm Bcb 2014 - 5th Acm Conference On Bioinformatics, Computational Biology, and Health Informatics. 304-313. DOI: 10.1145/2649387.264939 |
0.068 |
|
| 2012 |
Camerlengo T, Ozer HG, Onti-Srinivasan R, Yan P, Huang T, Parvin J, Huang K. From sequencer to supercomputer: an automatic pipeline for managing and processing next generation sequencing data. Amia Joint Summits On Translational Science Proceedings Amia Summit On Translational Science. 2012: 1-10. PMID 22779037 |
0.066 |
|
| 2009 |
Camerlengo T, Ozer HG, Yan P, Parvin J, Huang T, Huang K, Perez F, Teng M, Li L, Liu Y, Kurc T. Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research. Proceedings. Ieee International Conference On Bioinformatics and Biomedicine. 1: 392-395. PMID 21151835 DOI: 10.1109/BIBM.2009.84 |
0.061 |
|
| 2009 |
Ozer HG, Bozdaǧ D, Camerlengo T, Wu J, Huang YW, Hartley T, Parvin JD, Huang T, Catalyurek UV, Huang K. A comprehensive analysis workflow for genome-wide screening data from ChIP-sequencing experiments Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5462: 320-330. DOI: 10.1007/978-3-642-00727-9_30 |
0.057 |
|
| 1986 |
Parvin JD, Moscona A, Pan WT, Leider JM, Palese P. Measurement of the mutation rates of animal viruses: influenza A virus and poliovirus type 1. Journal of Virology. 59: 377-383. DOI: 10.1128/jvi.59.2.377-383.1986 |
0.046 |
|
| 2002 |
Parvin JD. In This Issue Cancer Biology & Therapy. 1: 595-596. DOI: 10.4161/cbt.304 |
0.013 |
|
| 1984 |
Boyer KM, Papierniak CK, Gadzala CA, Parvin JD, Gotoff SP. Transplacental passage of IgG antibody to group B streptococcus serotype Ia The Journal of Pediatrics. 104: 618-620. PMID 6368784 DOI: 10.1016/S0022-3476(84)80564-8 |
0.01 |
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