Ancha Baranova - Publications

Affiliations: 
George Mason University, Washington, DC 
Area:
Genetics, Cell Biology, Molecular Biology

199 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Orlov YL, Anashkina AA, Tatarinova TV, Baranova AV. Editorial: Bioinformatics of Genome Regulation, Volume II. Frontiers in Genetics. 12: 795257. PMID 34819949 DOI: 10.3389/fgene.2021.795257  1
2021 Baranova A, Cao H, Zhang F. Shared genetic liability and causal effects between major depressive disorder and insomnia. Human Molecular Genetics. PMID 34761251 DOI: 10.1093/hmg/ddab328  1
2021 Gozman L, Perry K, Nikogosov D, Klabukov I, Shevlyakov A, Baranova A. A Role of Variance in Interferon Genes to Disease Severity in COVID-19 Patients. Frontiers in Genetics. 12: 709388. PMID 34603376 DOI: 10.3389/fgene.2021.709388  1
2021 Orlov YL, Anashkina AA, Klimontov VV, Baranova AV. Medical Genetics, Genomics and Bioinformatics Aid in Understanding Molecular Mechanisms of Human Diseases. International Journal of Molecular Sciences. 22. PMID 34576125 DOI: 10.3390/ijms22189962  1
2021 Cao H, Li S, Baranova A, Zhang F. Shared Genetic Liability Between Major Depressive Disorder and Atopic Diseases. Frontiers in Immunology. 12: 665160. PMID 34566951 DOI: 10.3389/fimmu.2021.665160  1
2021 Baranova A, Cao H, Zhang F. Unraveling Risk Genes of COVID-19 by Multi-Omics Integrative Analyses. Frontiers in Medicine. 8: 738687. PMID 34557504 DOI: 10.3389/fmed.2021.738687  1
2021 Rao S, Baranova A, Cao H, Chen J, Zhang X, Zhang F. Corrigendum to: Genetic mechanisms of COVID-19 and its association with smoking and alcohol consumption. Briefings in Bioinformatics. PMID 34387328 DOI: 10.1093/bib/bbab357  1
2021 Cao H, Wang J, Baranova A, Zhang F. Classifying major mental disorders genetically. Progress in Neuro-Psychopharmacology & Biological Psychiatry. 110410. PMID 34339760 DOI: 10.1016/j.pnpbp.2021.110410  1
2021 Zhang F, Baranova A. Smoking quantitatively increases risk for COVID-19. The European Respiratory Journal. PMID 34326191 DOI: 10.1183/13993003.01273-2021  1
2021 Rao S, Baranova A, Cao H, Chen J, Zhang X, Zhang F. Genetic mechanisms of COVID-19 and its association with smoking and alcohol consumption. Briefings in Bioinformatics. PMID 34308962 DOI: 10.1093/bib/bbab284  1
2021 Zhang F, Baranova A, Zhou C, Cao H, Chen J, Zhang X, Xu M. Correction to: Causal influences of neuroticism on mental health and cardiovascular disease. Human Genetics. PMID 34241694 DOI: 10.1007/s00439-021-02306-y  1
2021 Zhang F, Baranova A, Zhou C, Cao H, Chen J, Zhang X, Xu M. Causal influences of neuroticism on mental health and cardiovascular disease. Human Genetics. PMID 33973063 DOI: 10.1007/s00439-021-02288-x  1
2021 Olson A, Zhang F, Cao H, Baranova A, Slavin M. Gene Set and Pathway Enrichment Analyses Highlight Involvement of Ion Transport in Cholinergic Pathways in Autism: Rationale for Nutritional Intervention. Frontiers in Neuroscience. 15: 648410. PMID 33958984 DOI: 10.3389/fnins.2021.648410  1
2021 Zhang F, Rao S, Cao H, Zhang X, Wang Q, Xu Y, Sun J, Wang C, Chen J, Xu X, Zhang N, Tian L, Yuan J, Wang G, Cai L, ... ... Baranova A, et al. Genetic evidence suggests posttraumatic stress disorder as a subtype of major depressive disorder. The Journal of Clinical Investigation. PMID 33905376 DOI: 10.1172/JCI145942  1
2021 Marakasova E, Baranova A. MMR Vaccine and COVID-19: Measles Protein Homology May Contribute to Cross-Reactivity or to Complement Activation Protection. Mbio. 12. PMID 33531391 DOI: 10.1128/mBio.03447-20  1
2020 Vasilyeva I, Bespalov V, Baranova A, Voznyuk I, Baranenko D. Differential Dynamics of the Levels of Low Molecular Weight DNA Fragments in the Plasma of Patients With Ischemic and Hemorrhagic Strokes. Basic and Clinical Neuroscience. 11: 805-810. PMID 33850617 DOI: 10.32598/bcn.11.6.1639.1  1
2020 Fu X, Wang J, Du J, Sun J, Baranova A, Zhang F. BDNF Gene's Role in Schizophrenia: From Risk Allele to Methylation Implications. Frontiers in Psychiatry. 11: 564277. PMID 33384622 DOI: 10.3389/fpsyt.2020.564277  1
2020 Cai L, Bao Y, Fu X, Cao H, Baranova A, Zhang X, Sun J, Zhang F. Causal Links between Major Depressive Disorder and Insomnia: A Mendelian Randomisation Study. Gene. 145271. PMID 33122081 DOI: 10.1016/j.gene.2020.145271  1
2020 Baranova AV, Leberfarb EY, Lebedev GS, Orlov YL. Medical genetics studies at the SBB-2019 and MGNGS-2019 conferences. Bmc Medical Genetics. 21: 186. PMID 33092553 DOI: 10.1186/s12881-020-01109-8  1
2020 Krivosheeva IA, Filatova AY, Moshkovskii SA, Baranova AV, Skoblov MY. Analysis of candidate genes expected to be essential for melanoma surviving. Cancer Cell International. 20: 488. PMID 33041669 DOI: 10.1186/s12935-020-01584-2  1
2020 Orlov YL, Voropaeva EN, Chen M, Baranova AV. Medical genomics at the Systems Biology and Bioinformatics (SBB-2019) school. Bmc Medical Genomics. 13: 127. PMID 32948185 DOI: 10.1186/S12920-020-00786-X  1
2020 Tatarinova TV, Baranova AV, Anashkina AA, Orlov YL. Genomics and Systems Biology at the "Century of Human Population Genetics" conference. Bmc Genomics. 21: 592. PMID 32912158 DOI: 10.1186/s12864-020-06993-1  1
2020 Danilov KA, Nikogosov DA, Musienko SV, Baranova AV. A comparison of BeadChip and WGS genotyping outputs using partial validation by sanger sequencing. Bmc Genomics. 21: 528. PMID 32912136 DOI: 10.1186/s12864-020-06919-x  1
2020 Orlov YL, Baranova AV, Tatarinova TV. Bioinformatics Methods in Medical Genetics and Genomics. International Journal of Molecular Sciences. 21. PMID 32872128 DOI: 10.3390/ijms21176224  1
2020 Orlov YL, Baranova AV. Editorial: Bioinformatics of Genome Regulation and Systems Biology. Frontiers in Genetics. 11: 625. PMID 32849761 DOI: 10.3389/fgene.2020.00625  1
2020 Nikogosov DA, Shevlyakov AD, Baranova AV. Comment on "ApoE e4e4 genotype and mortality with COVID-19 in UK Biobank" by Kuo et al. The Journals of Gerontology. Series a, Biological Sciences and Medical Sciences. PMID 32803253 DOI: 10.1093/gerona/glaa202  1
2020 Xie Q, Li Z, Wang Y, Zaidi S, Baranova A, Zhang F, Cao H. Preeclampsia Drives Molecular Networks to Shift Toward Greater Vulnerability to the Development of Autism Spectrum Disorder. Frontiers in Neurology. 11: 590. PMID 32760337 DOI: 10.3389/Fneur.2020.00590  1
2020 Wu Y, Cao H, Baranova A, Huang H, Li S, Cai L, Rao S, Dai M, Xie M, Dou Y, Hao Q, Zhu L, Zhang X, Yao Y, Zhang F, et al. Correction: Multi-trait analysis for genome-wide association study of five psychiatric disorders. Translational Psychiatry. 10: 234. PMID 32665544 DOI: 10.1038/S41398-020-00924-0  1
2020 Li X, Zhu Y, Keaton M, Baranova A, Liu S, Hu X, Li Q, Cheng L, Zhou P, Cao H, Xu Y. Variants and expression changes in PPAR-encoding genes presented no significant association with overall schizophrenia cases. Bioscience Reports. PMID 32643760 DOI: 10.1042/Bsr20201083  1
2020 Wu Y, Cao H, Baranova A, Huang H, Li S, Cai L, Rao S, Dai M, Xie M, Dou Y, Hao Q, Zhu L, Zhang X, Yao Y, Xu M, et al. Multi-trait analysis for genome-wide association study of five psychiatric disorders. Translational Psychiatry. 10: 209. PMID 32606422 DOI: 10.1038/S41398-020-00902-6  1
2020 Dong Y, Cao H, Cao R, Baranova A. TNFRSF12A and CD38 Contribute to a Vicious Circle for Chronic Obstructive Pulmonary Disease by Engaging Senescence Pathways. Frontiers in Cell and Developmental Biology. 8: 330. PMID 32537452 DOI: 10.3389/Fcell.2020.00330  1
2020 Zhang XJ, Cui ZH, Dong Y, Liang XW, Zhao YX, Baranova A, Cao H, Wang L. GPNMB contributes to a vicious circle for chronic obstructive pulmonary disease. Bioscience Reports. PMID 32478378 DOI: 10.1042/Bsr20194459  1
2020 Lian M, Cao H, Baranova A, Kural KC, Hou L, He S, Shao Q, Fang J. Aging-associated genes and contribute to thyroid cancer: An evidence for the involvement of hypoxia as a driver. Oncology Letters. 19: 3634-3642. PMID 32391089 DOI: 10.3892/Ol.2020.11530  1
2020 Stoddard S, Riggleman A, Carpenter A, Baranova A. The Detection of 8-Oxo-7,8-Dihydro-2'-Deoxyguanosine in Circulating Cell-Free DNA: A Step Towards Longitudinal Monitoring of Health. Advances in Experimental Medicine and Biology. 1241: 125-138. PMID 32383119 DOI: 10.1007/978-3-030-41283-8_8  0.01
2020 Maltseva D, Raygorodskaya M, Knyazev E, Zgoda V, Tikhonova O, Zaidi S, Nikulin S, Baranova A, Turchinovich A, Rodin S, Tonevitsky A. Knockdown of the α5 laminin chain affects differentiation of colorectal cancer cells and their sensitivity to chemotherapy. Biochimie. PMID 32334043 DOI: 10.1016/J.Biochi.2020.04.016  1
2020 Kurnat-Thoma E, Baranova A, Baird P, Brodsky E, Butte AJ, Cheema AK, Cheng F, Dutta S, Grant C, Giordano J, Maitland-van der Zee AH, Fridsma DB, Jarrin R, Kann MG, Keeney J, et al. Recent Advances in Systems and Network Medicine: Meeting Report from the First International Conference in Systems and Network Medicine. Systems Medicine (New Rochelle, N.Y.). 3: 22-35. PMID 32226924 DOI: 10.1089/sysm.2020.0001  0.01
2020 Cao H, Baranova A, Yue W, Yu H, Zhu Z, Zhang F, Liu D. miRNA-Coordinated Schizophrenia Risk Network Cross-Talk With Cardiovascular Repair and Opposed Gliomagenesis. Frontiers in Genetics. 11: 149. PMID 32194626 DOI: 10.3389/Fgene.2020.00149  1
2019 Gerasimenko T, Nikulin S, Zakharova G, Poloznikov A, Petrov V, Baranova A, Tonevitsky A. Impedance Spectroscopy as a Tool for Monitoring Performance in 3D Models of Epithelial Tissues. Frontiers in Bioengineering and Biotechnology. 7: 474. PMID 32039179 DOI: 10.3389/Fbioe.2019.00474  1
2019 Gnuchikh E, Baranova A, Schukina V, Khaliullin I, Zavilgelsky G, Manukhov I. Kinetics of the thermal inactivation and the refolding of bacterial luciferases in Bacillus subtilis and in Escherichia coli differ. Plos One. 14: e0226576. PMID 31869349 DOI: 10.1371/Journal.Pone.0226576  0.01
2019 Mayburd AL, Baranova A. Increased lifespan, decreased mortality, and delayed cognitive decline in osteoarthritis. Scientific Reports. 9: 18639. PMID 31819096 DOI: 10.1038/S41598-019-54867-8  1
2019 Liu S, Rao S, Xu Y, Li J, Huang H, Zhang X, Fu H, Wang Q, Cao H, Baranova A, Jin C, Zhang F. Identifying common genome-wide risk genes for major psychiatric traits. Human Genetics. PMID 31813014 DOI: 10.1007/S00439-019-02096-4  1
2019 Shkurnikov M, Nikulin S, Nersisyan S, Poloznikov A, Zaidi S, Baranova A, Schumacher U, Wicklein D, Tonevitsky A. -Regulating miR-4274 and Its Host Gene Play a Role in -Dependent Effects on Phenotype of Basal-Like Breast Cancer. Frontiers in Molecular Biosciences. 6: 122. PMID 31781574 DOI: 10.3389/Fmolb.2019.00122  1
2019 Mayburd AL, Koivogui M, Baranova A. Pharmacological signatures of the reduced incidence and the progression of cognitive decline in ageing populations suggest the protective role of beneficial polypharmacy. Plos One. 14: e0224315. PMID 31693707 DOI: 10.1371/Journal.Pone.0224315  1
2019 Plotnikova O, Baranova A, Skoblov M. Comprehensive Analysis of Human microRNA-mRNA Interactome. Frontiers in Genetics. 10: 933. PMID 31649721 DOI: 10.3389/Fgene.2019.00933  1
2019 Ivanov M, Ivanov M, Kasianov A, Rozhavskaya E, Musienko S, Baranova A, Mileyko V. Novel bioinformatics quality control metric for next-generation sequencing experiments in the clinical context. Nucleic Acids Research. PMID 31511888 DOI: 10.1093/Nar/Gkz775  1
2019 Xie Q, Shen W, Li Z, Baranova A, Cao H, Li Z. A core collection of pan-schizophrenia genes allows building cohort-specific signatures of affected brain. Scientific Reports. 9: 12671. PMID 31481672 DOI: 10.1038/S41598-019-48605-3  1
2019 Glazko G, Zybailov B, Emmert-Streib F, Baranova A, Rahmatallah Y. Proteome-transcriptome alignment of molecular portraits achieved by self-contained gene set analysis: Consensus colon cancer subtypes case study. Plos One. 14: e0221444. PMID 31437237 DOI: 10.1371/Journal.Pone.0221444  1
2019 Lian X, Baranova A, Ngo J, Yu G, Cao H. UGT2B17 and miR-224 contribute to hormone dependency trends in adenocarcinoma and squamous cell carcinoma of esophagus. Bioscience Reports. PMID 31164411 DOI: 10.1042/Bsr20190472  1
2019 Baranova AV, Skoblov MY, Voropaeva EN, Shanmughavel P, Orlov YL. Medical genetics studies at BGRS conference series. Bmc Medical Genetics. 20: 50. PMID 30967129 DOI: 10.1186/s12881-019-0769-z  1
2019 Ivanov M, Chernenko P, Breder V, Laktionov K, Rozhavskaya E, Musienko S, Baranova A, Mileyko V. Utility of cfDNA Fragmentation Patterns in Designing the Liquid Biopsy Profiling Panels to Improve Their Sensitivity. Frontiers in Genetics. 10: 194. PMID 30915108 DOI: 10.3389/Fgene.2019.00194  1
2019 Baranova AV, Klimontov VV, Letyagin AY, Orlov YL. Medical genomics research at BGRS-2018. Bmc Medical Genomics. 12: 36. PMID 30871564 DOI: 10.1186/s12920-019-0480-0  1
2019 Sakharov D, Maltseva D, Knyazev E, Nikulin S, Poloznikov A, Shilin S, Baranova A, Tsypina I, Tonevitsky A. Towards embedding Caco-2 model of gut interface in a microfluidic device to enable multi-organ models for systems biology. Bmc Systems Biology. 13: 19. PMID 30836980 DOI: 10.1186/S12918-019-0686-Y  1
2019 Orlov YL, Hofestädt R, Baranova AV. Systems biology research at BGRS-2018. Bmc Systems Biology. 13: 21. PMID 30836966 DOI: 10.1186/s12918-019-0685-z  1
2019 Orlov YL, Baranova AV, Kolchanov NA, Moroz LL. Evolutionary biology and biodiversity research at BGRS-2018. Bmc Evolutionary Biology. 19: 43. PMID 30813910 DOI: 10.1186/S12862-019-1368-5  1
2019 Vasilyeva I, Bespalov V, Baranova A, Voznyuk I, Baranenko D. Differential dynamics of the levels of low molecular weight DNA fragments in plasma of patients with ischemic and hemorrhaging strokes Basic and Clinical Neuroscience. DOI: 10.32598/Bcn.9.10.490  1
2018 Turchinovich A, Baranova A, Drapkina O, Tonevitsky A. Cell-Free Circulating Nucleic Acids as Early Biomarkers for NAFLD and NAFLD-Associated Disorders. Frontiers in Physiology. 9: 1256. PMID 30294278 DOI: 10.3389/Fphys.2018.01256  1
2018 Reznik A, Plotnikova O, Skvortsov A, Skoblov M, Reznik O, Baranova A. Reperfusion Activates AP-1 and Heat Shock Response in Donor Kidney Parenchyma after Warm Ischemia. Biomed Research International. 2018: 5717913. PMID 30186861 DOI: 10.1155/2018/5717913  1
2018 Mehta R, Shaw G, Masschelin P, Felix S, Otgonsuren M, Baranova A, Goodman Z, Younossi Z. Polymorphisms in the receptor for advanced glycation end-products (RAGE) gene and circulating RAGE levels as a susceptibility factor for non-alcoholic steatohepatitis (NASH). Plos One. 13: e0199294. PMID 29928018 DOI: 10.1371/Journal.Pone.0199294  1
2018 Poloznikov A, Gazaryan I, Shkurnikov M, Nikulin S, Drapkina O, Baranova A, Tonevitsky A. In vitro and in silico liver models: Current trends, challenges and opportunities. Altex. PMID 29813171 DOI: 10.14573/Altex.1803221  1
2018 Polesskaya O, Baranova A, Bui S, Kondratev N, Kananykhina E, Nazarenko O, Shapiro T, Nardia FB, Kornienko V, Chandhoke V, Stadler I, Lanzafame R, Myakishev-Rempel M. Optogenetic regulation of transcription. Bmc Neuroscience. 19: 12. PMID 29745855 DOI: 10.1186/S12868-018-0411-6  1
2018 Orlov YL, Moroz LL, Baranova AV. Neuroscience researches at Belyaev conference-2017. Bmc Neuroscience. 19: 14. PMID 29745834 DOI: 10.1186/S12868-018-0410-7  1
2018 Klimenko NS, Tyakht AV, Popenko AS, Vasiliev AS, Altukhov IA, Ischenko DS, Shashkova TI, Efimova DA, Nikogosov DA, Osipenko DA, Musienko SV, Selezneva KS, Baranova A, Kurilshikov AM, Toshchakov SM, et al. Microbiome Responses to an Uncontrolled Short-Term Diet Intervention in the Frame of the Citizen Science Project. Nutrients. 10. PMID 29738477 DOI: 10.3390/Nu10050576  1
2018 Polesskaya O, Kananykhina E, Roy-Engel AM, Nazarenko O, Kulemzina I, Baranova A, Vassetsky Y, Myakishev-Rempel M. The role of Alu-derived RNAs in Alzheimer's and other neurodegenerative conditions. Medical Hypotheses. 115: 29-34. PMID 29685192 DOI: 10.1016/J.Mehy.2018.03.008  1
2018 Orlov YL, Baranova AV. Correction to: selected articles from Belyaev Conference 2017: structural biology. Bmc Structural Biology. 18: 3. PMID 29562896 DOI: 10.1186/s12900-018-0082-7  1
2018 Orlov YL, Baranova AV, Hofestädt R, Kolchanov NA. Genomics at Belyaev conference - 2017. Bmc Genomics. 19: 79. PMID 29504918 DOI: 10.1186/s12864-018-4476-5  1
2018 Ivanov M, Matsvay A, Glazova O, Krasovskiy S, Usacheva M, Amelina E, Chernyak A, Ivanov M, Musienko S, Prodanov T, Kovalenko S, Baranova A, Khafizov K. Targeted sequencing reveals complex, phenotype-correlated genotypes in cystic fibrosis. Bmc Medical Genomics. 11: 13. PMID 29504914 DOI: 10.1186/S12920-018-0328-Z  1
2018 Orlov YL, Fernandez-Masso JR, Chen M, Baranova AV. Medical genomics at Belyaev Conference - 2017. Bmc Medical Genomics. 11: 11. PMID 29504904 DOI: 10.1186/S12920-018-0324-3  1
2018 Khalilipour N, Baranova A, Jebelli A, Heravi-Moussavi A, Bruskin S, Abbaszadegan MR. Familial Esophageal Squamous Cell Carcinoma with damaging rare/germline mutations in KCNJ12/KCNJ18 and GPRIN2 genes. Cancer Genetics. 221: 46-52. PMID 29405996 DOI: 10.1016/J.Cancergen.2017.11.011  1
2017 Triska P, Chekanov N, Stepanov V, Khusnutdinova EK, Kumar GPA, Akhmetova V, Babalyan K, Boulygina E, Kharkov V, Gubina M, Khidiyatova I, Khitrinskaya I, Khrameeva EE, Khusainova R, Konovalova N, ... ... Baranova A, et al. Between Lake Baikal and the Baltic Sea: genomic history of the gateway to Europe. Bmc Genetics. 18: 110. PMID 29297395 DOI: 10.1186/S12863-017-0578-3  1
2017 Orlov YL, Baranova AV, Chen M, Salina EA. Plant Biology at Belyaev Conference - 2017. Bmc Plant Biology. 17: 257. PMID 29297331 DOI: 10.1186/S12870-017-1189-X  1
2017 Orlov YL, Baranova AV, Herbeck YE. Evolutionary Biology at Belyaev Conference - 2017. Bmc Evolutionary Biology. 17: 260. PMID 29297302 DOI: 10.1186/s12862-017-1102-0  1
2017 Orlov YL, Baranova AV, Tatarinova TV, Kolchanov NA. Genetics at Belyaev Conference - 2017: introductory note. Bmc Genetics. 18: 116. PMID 29297300 DOI: 10.1186/s12863-017-0577-4  1
2017 Triska M, Solovyev V, Baranova A, Kel A, Tatarinova TV. Nucleotide patterns aiding in prediction of eukaryotic promoters. Plos One. 12: e0187243. PMID 29141011 DOI: 10.1371/Journal.Pone.0187243  1
2017 Ponomarenko P, Ryutov A, Maglinte DT, Baranova A, Tatarinova TV, Gai X. Clinical utility of the low-density Infinium QC genotyping Array in a genomics-based diagnostics laboratory. Bmc Medical Genomics. 10: 57. PMID 28985730 DOI: 10.1186/S12920-017-0297-7  1
2017 Marakasova ES, Eisenhaber B, Maurer-Stroh S, Eisenhaber F, Baranova A. Prenylation of viral proteins by enzymes of the host: Virus-driven rationale for therapy with statins and FT/GGT1 inhibitors. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 28885709 DOI: 10.1002/Bies.201700014  0.01
2017 Mayburd A, Baranova A. Knowledge-Based Compact Disease Models: A Rapid Path from High-Throughput Data to Understanding Causative Mechanisms for a Complex Disease. Methods in Molecular Biology (Clifton, N.J.). 1613: 425-461. PMID 28849571 DOI: 10.1007/978-1-4939-7027-8_17  1
2017 Zolotarenko A, Chekalin E, Mehta R, Baranova A, Tatarinova TV, Bruskin S. Identification of Transcriptional Regulators of Psoriasis from RNA-Seq Experiments. Methods in Molecular Biology (Clifton, N.J.). 1613: 355-370. PMID 28849568 DOI: 10.1007/978-1-4939-7027-8_14  1
2017 Forouzanfar N, Baranova A, Milanizadeh S, Heravi-Moussavi A, Jebelli A, Abbaszadegan MR. Novel candidate genes may be possible predisposing factors revealed by whole exome sequencing in familial esophageal squamous cell carcinoma. Tumour Biology : the Journal of the International Society For Oncodevelopmental Biology and Medicine. 39: 1010428317699115. PMID 28459198 DOI: 10.1177/1010428317699115  1
2017 Fedintsev A, Kashtanova D, Tkacheva O, Strazhesko I, Kudryavtseva A, Baranova A, Moskalev A. Markers of arterial health could serve as accurate non-invasive predictors of human biological and chronological age. Aging. PMID 28455973 DOI: 10.18632/aging.101227  1
2017 Baranova AV, Orlov YL. Evolutionary biology at BGRS\SB-2016. Bmc Evolutionary Biology. 17: 21. PMID 28251876 DOI: 10.1186/s12862-016-0869-8  1
2017 Ivanov M, Laktionov K, Breder V, Chernenko P, Novikova E, Telysheva E, Musienko S, Baranova A, Mileyko V. Towards standardization of next-generation sequencing of FFPE samples for clinical oncology: intrinsic obstacles and possible solutions. Journal of Translational Medicine. 15: 22. PMID 28137276 DOI: 10.1186/S12967-017-1125-8  1
2017 Moskalev A, Anisimov V, Aliper A, Artemov A, Asadullah K, Belsky D, Baranova A, de Grey A, Dixit VD, Debonneuil E, Dobrovolskaya E, Fedichev P, Fedintsev A, Fraifeld V, Franceschi C, et al. A review of the biomedical innovations for healthy longevity. Aging. PMID 28132958 DOI: 10.18632/Aging.101163  1
2017 Mileyko, Ivanov M, Ignatova E, Laktionov K, Brede, Baranova A, Reznik A. 20Design of targeted next-generation sequencing (NGS) of circulating tumour DNA (ctDNA): towards overcoming DNA Annals of Oncology. 28. DOI: 10.1093/Annonc/Mdx508.017  1
2016 Orlov YL, Baranova AV, Salina EA. Computational plant bioscience at BGRS\SB-2016: introductory note. Bmc Plant Biology. 16: 243. PMID 28105950 DOI: 10.1186/s12870-016-0923-0  1
2016 Kural KC, Tandon N, Skoblov M, Kel-Margoulis OV, Baranova AV. Pathways of aging: comparative analysis of gene signatures in replicative senescence and stress induced premature senescence. Bmc Genomics. 17: 1030. PMID 28105936 DOI: 10.1186/s12864-016-3352-4  1
2016 Orlov YL, Baranova AV, Markel AL. Computational models in genetics at BGRS\SB-2016: introductory note. Bmc Genetics. 17: 155. PMID 28105935 DOI: 10.1186/s12863-016-0465-3  1
2016 Orlov YL, Baranova AV, Hofestädt R, Kolchanov NA. Computational genomics at BGRS\SB-2016: introductory note. Bmc Genomics. 17: 996. PMID 28105925 DOI: 10.1186/s12864-016-3350-6  1
2016 Mayburd A, Baranova A. Predicting High-Impact Pharmacological Targets by Integrating Transcriptome and Text-Mining Features. Journal of Pharmacy & Pharmaceutical Sciences : a Publication of the Canadian Society For Pharmaceutical Sciences, Societe Canadienne Des Sciences Pharmaceutiques. 19: 475-495. PMID 28057171 DOI: 10.18433/J3Sc8X  1
2016 Zolotarenko A, Chekalin E, Mesentsev A, Kiseleva L, Gribanova E, Mehta R, Baranova A, Tatarinova TV, Piruzian ES, Bruskin S. Integrated computational approach to the analysis of RNA-seq data reveals new transcriptional regulators of psoriasis. Experimental & Molecular Medicine. 48: e268. PMID 27811935 DOI: 10.1038/Emm.2016.97  1
2016 Mehta R, Jeiran K, Koenig AB, Otgonsuren M, Goodman Z, Baranova A, Younossi Z. The role of mitochondrial genomics in patients with non-alcoholic steatohepatitis (NASH). Bmc Medical Genetics. 17: 63. PMID 27596100 DOI: 10.1186/S12881-016-0324-0  1
2016 Zernov N, Skoblov M, Baranova A, Boyarsky K. Mutations in gonadotropin-releasing hormone signaling pathway in two nIHH patients with successful pregnancy outcomes. Reproductive Biology and Endocrinology : Rb&E. 14: 48. PMID 27544332 DOI: 10.1186/S12958-016-0183-8  1
2016 Morozova I, Flegontov P, Mikheyev AS, Bruskin S, Asgharian H, Ponomarenko P, Klyuchnikov V, ArunKumar G, Prokhortchouk E, Gankin Y, Rogaev E, Nikolsky Y, Baranova A, Elhaik E, Tatarinova TV. Toward high-resolution population genomics using archaeological samples. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 27436340 DOI: 10.1093/Dnares/Dsw029  1
2016 Konopleva MN, Khrulnova SA, Baranova A, Ekimov LV, Bazhenov SV, Goryanin II, Manukhov IV. A combination of luxR1 and luxR2 genes activates Pr-promoters of psychrophilic Aliivibrio logei lux-operon independently of chaperonin GroEL/ES and protease Lon at high concentrations of autoinducer. Biochemical and Biophysical Research Communications. 473: 1158-62. PMID 27067048 DOI: 10.1016/J.Bbrc.2016.04.032  1
2016 Jacobsen KH, Aguirre AA, Bailey CL, Baranova AV, Crooks AT, Croitoru A, Delamater PL, Gupta J, Kehn-Hall K, Narayanan A, Pierobon M, Rowan KE, Schwebach JR, Seshaiyer P, Sklarew DM, et al. Lessons from the Ebola Outbreak: Action Items for Emerging Infectious Disease Preparedness and Response. Ecohealth. PMID 26915507 DOI: 10.1007/S10393-016-1100-5  1
2016 Khrulnova SA, Baranova A, Bazhenov SV, Goryanin II, Konopleva MN, Maryshev IV, Salykhova AI, Vasilyeva AV, Manukhov IV, Zavilgelsky GB. Lux-operon of the Marine Psychrophilic Bacteria Aliivibrio logei: a Comparative Analysis of the LuxR1/LuxR2 Regulatory Activity in Escherichia coli cells. Microbiology (Reading, England). PMID 26847185 DOI: 10.1099/Mic.0.000253  1
2016 Baranova AV, Orlov YL. The papers presented at 7th Young Scientists School "Systems Biology and Bioinformatics" (SBB'15): Introductory Note. Introduction. Bmc Genetics. 17: 20. PMID 26822407 DOI: 10.1186/s12863-015-0326-5  1
2015 Ivanov M, Baranova A, Butler T, Spellman P, Mileyko V. Non-random fragmentation patterns in circulating cell-free DNA reflect epigenetic regulation. Bmc Genomics. 16: S1. PMID 26693644 DOI: 10.1186/1471-2164-16-S13-S1  1
2015 Vasilyeva I, Bespalov V, Baranova A. Radioprotective combination of α-tocopherol and ascorbic acid promotes apoptosis that is evident by release of low-molecular weight DNA fragments into circulation. International Journal of Radiation Biology. 91: 872-7. PMID 26473391 DOI: 10.3109/09553002.2015.1087066  1
2015 Myakishev-Rempel M, Stadler I, Polesskaya O, Motiwala AS, Nardia FB, Mintz B, Baranova A, Zavislan J, Lanzafame RJ. Red Light Modulates Ultraviolet-Induced Gene Expression in the Epidermis of Hairless Mice. Photomedicine and Laser Surgery. 33: 498-503. PMID 26398729 DOI: 10.1089/Pho.2015.3916  1
2015 Baranova A, Willett JD. Anti-aging dilemma: to restore the hardware or to reinstall the software? Frontiers in Genetics. 6: 129. PMID 25926845 DOI: 10.3389/Fgene.2015.00129  1
2015 Manyam G, Birerdinc A, Baranova A. KPP: KEGG Pathway Painter. Bmc Systems Biology. 9: S3. PMID 25879163 DOI: 10.1186/1752-0509-9-S2-S3  1
2015 Velegzhaninov I, Mezenceva V, Shostal O, Baranova A, Moskalev A. Age dynamics of DNA damage and CpG methylation in the peripheral blood leukocytes of mice. Mutation Research. 775: 38-42. PMID 25867117 DOI: 10.1016/J.Mrfmmm.2015.03.006  1
2015 de Oliveira MR, Elangovan N, Ljubkovic M, Baranova A. The roads to mitochondrial dysfunction. Biomed Research International. 2015: 235370. PMID 25654089 DOI: 10.1155/2015/235370  0.01
2015 Stepanova M, Rodriguez E, Birerdinc A, Baranova A. Age-independent rise of inflammatory scores may contribute to accelerated aging in multi-morbidity. Oncotarget. 6: 1414-21. PMID 25638154 DOI: 10.18632/Oncotarget.2725  1
2015 Estep JM, Goodman Z, Sharma H, Younossi E, Elarainy H, Baranova A, Younossi Z. Adipocytokine expression associated with miRNA regulation and diagnosis of NASH in obese patients with NAFLD. Liver International : Official Journal of the International Association For the Study of the Liver. 35: 1367-72. PMID 24684403 DOI: 10.1111/Liv.12555  1
2015 Glebova K, Veiko N, Kostyuk S, Izhevskaya V, Baranova A. Oxidized extracellular DNA as a stress signal that may modify response to anticancer therapy. Cancer Letters. 356: 22-33. PMID 24045040 DOI: 10.1016/J.Canlet.2013.09.005  1
2014 Marakhonov A, Sadovskaya N, Antonov I, Baranova A, Skoblov M. Analysis of discordant Affymetrix probesets casts serious doubt on idea of microarray data reutilization. Bmc Genomics. 15: S8. PMID 25563078 DOI: 10.1186/1471-2164-15-S12-S8  1
2014 Veytsman B, Wang L, Cui T, Bruskin S, Baranova A. Distance-based classifiers as potential diagnostic and prediction tools for human diseases. Bmc Genomics. 15: S10. PMID 25563076 DOI: 10.1186/1471-2164-15-S12-S10  1
2014 Mehta R, Neupane A, Wang L, Goodman Z, Baranova A, Younossi ZM. Expression of NALPs in adipose and the fibrotic progression of non-alcoholic fatty liver disease in obese subjects. Bmc Gastroenterology. 14: 208. PMID 25512222 DOI: 10.1186/S12876-014-0208-8  1
2014 Baranova A. LRRC8s revisited: and now they SWELL! (Retrospective on DOI 10.1002/bies.201100173). Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 36: 1017-8. PMID 25257378 DOI: 10.1002/Bies.201400159  0.01
2014 Mehta R, Birerdinc A, Wang L, Younoszai Z, Moazzez A, Elariny H, Goodman Z, Chandhoke V, Baranova A, Younossi ZM. Expression of energy metabolism related genes in the gastric tissue of obese individuals with non-alcoholic fatty liver disease. Bmc Gastroenterology. 14: 72. PMID 24716593 DOI: 10.1186/1471-230X-14-72  1
2014 Glebova K, Reznik ON, Reznik AO, Mehta R, Galkin A, Baranova A, Skoblov M. siRNA technology in kidney transplantation: current status and future potential. Biodrugs : Clinical Immunotherapeutics, Biopharmaceuticals and Gene Therapy. 28: 345-61. PMID 24573958 DOI: 10.1007/S40259-014-0087-0  1
2014 Kolker E, Özdemir V, Martens L, Hancock W, Anderson G, Anderson N, Aynacioglu S, Baranova A, Campagna SR, Chen R, Choiniere J, Dearth SP, Feng WC, Ferguson L, Fox G, et al. Toward more transparent and reproducible omics studies through a common metadata checklist and data publications. Omics : a Journal of Integrative Biology. 18: 10-4. PMID 24456465 DOI: 10.1089/Omi.2013.0149  1
2014 Loria A, Doyle K, Weinstein AA, Winter P, Escheik C, Price J, Wang L, Birerdinc A, Baranova A, Gerber L, Younossi ZM. Multiple factors predict physical performance in people with chronic liver disease. American Journal of Physical Medicine & Rehabilitation / Association of Academic Physiatrists. 93: 470-6. PMID 24398583 DOI: 10.1097/Phm.0000000000000050  1
2014 Ponomarenko E, Baranova A, Lisitsa A, Albar JP, Archakov A. The chromosome-centric human proteome project at FEBS Congress. Proteomics. 14: 147-52. PMID 24285571 DOI: 10.1002/Pmic.201300373  0.01
2013 Kolker E, Özdemir V, Martens L, Hancock W, Anderson G, Anderson N, Aynacioglu S, Baranova A, Campagna SR, Chen R, Choiniere J, Dearth SP, Feng WC, Ferguson L, Fox G, et al. Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications. Big Data. 1: 196-201. PMID 27447251 DOI: 10.1089/big.2013.0039  1
2013 Sherbakov D, Panchin Y, Baranova A. Extracting evolutionary insights using bioinformatics. International Journal of Genomics. 2013: 376235. PMID 24324950 DOI: 10.1155/2013/376235  1
2013 Mayburd A, Baranova A. Knowledge-based compact disease models identify new molecular players contributing to early-stage Alzheimer's disease. Bmc Systems Biology. 7: 121. PMID 24196233 DOI: 10.1186/1752-0509-7-121  1
2013 Kostyuk SV, Konkova MS, Ershova ES, Alekseeva AJ, Smirnova TD, Stukalov SV, Kozhina EA, Shilova NV, Zolotukhina TV, Markova ZG, Izhevskaya VL, Baranova A, Veiko NN. An exposure to the oxidized DNA enhances both instability of genome and survival in cancer cells. Plos One. 8: e77469. PMID 24147001 DOI: 10.1371/Journal.Pone.0077469  1
2013 Baranova A, Tran TP, Afendy A, Wang L, Shamsaddini A, Mehta R, Chandhoke V, Birerdinc A, Younossi ZM. Molecular signature of adipose tissue in patients with both non-alcoholic fatty liver disease (NAFLD) and polycystic ovarian syndrome (PCOS). Journal of Translational Medicine. 11: 133. PMID 23721173 DOI: 10.1186/1479-5876-11-133  1
2013 Sharma H, Estep M, Birerdinc A, Afendy A, Moazzez A, Elariny H, Goodman Z, Chandhoke V, Baranova A, Younossi ZM. Expression of genes for microRNA-processing enzymes is altered in advanced non-alcoholic fatty liver disease. Journal of Gastroenterology and Hepatology. 28: 1410-5. PMID 23663110 DOI: 10.1111/Jgh.12268  1
2013 Mehta R, Birerdinc A, Neupane A, Shamsaddini A, Afendy A, Elariny H, Chandhoke V, Baranova A, Younossi ZM. Expression of inflammation-related genes is altered in gastric tissue of patients with advanced stages of NAFLD. Mediators of Inflammation. 2013: 684237. PMID 23661906 DOI: 10.1155/2013/684237  1
2013 Kostyuk SV, Tabakov VJ, Chestkov VV, Konkova MS, Glebova KV, Baydakova GV, Ershova ES, Izhevskaya VL, Baranova A, Veiko NN. Oxidized DNA induces an adaptive response in human fibroblasts. Mutation Research. 747: 6-18. PMID 23644378 DOI: 10.1016/J.Mrfmmm.2013.04.007  1
2013 Skoblov M, Marakhonov A, Marakasova E, Guskova A, Chandhoke V, Birerdinc A, Baranova A. Protein partners of KCTD proteins provide insights about their functional roles in cell differentiation and vertebrate development. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 35: 586-96. PMID 23592240 DOI: 10.1002/Bies.201300002  1
2013 Ermakov AV, Konkova MS, Kostyuk SV, Izevskaya VL, Baranova A, Veiko NN. Oxidized extracellular DNA as a stress signal in human cells. Oxidative Medicine and Cellular Longevity. 2013: 649747. PMID 23533696 DOI: 10.1155/2013/649747  1
2013 Page S, Birerdinc A, Estep M, Stepanova M, Afendy A, Petricoin E, Younossi Z, Chandhoke V, Baranova A. Knowledge-based identification of soluble biomarkers: hepatic fibrosis in NAFLD as an example. Plos One. 8: e56009. PMID 23405244 DOI: 10.1371/Journal.Pone.0056009  1
2013 Birerdinc A, Jarrar M, Stotish T, Randhawa M, Baranova A. Manipulating molecular switches in brown adipocytes and their precursors: a therapeutic potential. Progress in Lipid Research. 52: 51-61. PMID 22960032 DOI: 10.1016/J.Plipres.2012.08.001  1
2013 Baranova A. Multi-tiered strategy for an optimization of therapeutic siRNA compositions and their delivery Journal of Genetic Syndromes & Gene Therapy. DOI: 10.4172/2157-7412.S1.002  0.01
2012 Birerdinc A, Afendy A, Stepanova M, Younossi I, Baranova A, Younossi ZM. Gene expression profiles associated with depression in patients with chronic hepatitis C (CH-C). Brain and Behavior. 2: 525-31. PMID 23139898 DOI: 10.1002/Brb3.72  1
2012 Baranova A. The more the merrier: the pannexin family just got a new branch. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 34: 530-1. PMID 22696111 DOI: 10.1002/Bies.201200078  0.01
2012 Birerdinc A, Mehta R, Alhussain R, Afendi A, Chandhoke V, Younossi Z, Baranova A. [Selection of reliable reference genes for qRT-PCR analysis in human non-cancerous gastric tissue]. Molekuliarnaia Biologiia. 46: 166-75. PMID 22642115 DOI: 10.1134/S0026893312010049  1
2012 Mehta R, Baranova A, Birerdinc A. Do-It-Yourself device for recovery of cryopreserved samples accidentally dropped into cryogenic storage tanks. Journal of Visualized Experiments : Jove. e3903. PMID 22617806 DOI: 10.3791/3903  1
2012 Kostjuk S, Loseva P, Chvartatskaya O, Ershova E, Smirnova T, Malinovskaya E, Roginko O, Kuzmin V, Izhevskaia V, Baranova A, Ginter E, Veiko N. Extracellular GC-rich DNA activates TLR9- and NF-kB-dependent signaling pathways in human adipose-derived mesenchymal stem cells (haMSCs). Expert Opinion On Biological Therapy. 12: S99-111. PMID 22594608 DOI: 10.1517/14712598.2012.690028  1
2012 Birerdinc A, Estep M, Afendy A, Stepanova M, Younossi I, Baranova A, Younossi ZM. Gene expression profiles associated with anaemia and ITPA genotypes in patients with chronic hepatitis C (CH-C). Journal of Viral Hepatitis. 19: 414-22. PMID 22571903 DOI: 10.1111/J.1365-2893.2011.01564.X  1
2012 Stephen S, Baranova A, Younossi ZM. Nonalcoholic fatty liver disease and bariatric surgery. Expert Review of Gastroenterology & Hepatology. 6: 163-71. PMID 22375522 DOI: 10.1586/Egh.11.97  1
2012 Younossi ZM, Birerdinc A, Estep M, Stepanova M, Afendy A, Baranova A. The impact of IL28B genotype on the gene expression profile of patients with chronic hepatitis C treated with pegylated interferon alpha and ribavirin. Journal of Translational Medicine. 10: 25. PMID 22313623 DOI: 10.1186/1479-5876-10-25  1
2012 Elariny HA, Baranova A. Comment on: Diet-induced obesity associated with steatosis, oxidative stress and inflammation in liver. Surgery For Obesity and Related Diseases : Official Journal of the American Society For Bariatric Surgery. 8: 81-3. PMID 22118841 DOI: 10.1016/J.Soard.2011.10.004  0.01
2012 Kostyuk SV, Ermakov AV, Alekseeva AY, Smirnova TD, Glebova KV, Efremova LV, Baranova A, Veiko NN. Role of extracellular DNA oxidative modification in radiation induced bystander effects in human endotheliocytes. Mutation Research. 729: 52-60. PMID 22001237 DOI: 10.1016/J.Mrfmmm.2011.09.005  1
2011 Amaya M, Baranova A, van Hoek ML. Protein prenylation: a new mode of host-pathogen interaction. Biochemical and Biophysical Research Communications. 416: 1-6. PMID 22079293 DOI: 10.1016/J.Bbrc.2011.10.142  0.01
2011 Akula N, Baranova A, Seto D, Solka J, Nalls MA, Singleton A, Ferrucci L, Tanaka T, Bandinelli S, Cho YS, Kim YJ, Lee JY, Han BG, et al. A network-based approach to prioritize results from genome-wide association studies. Plos One. 6: e24220. PMID 21915301 DOI: 10.1371/Journal.Pone.0024220  1
2011 Baranova A, Lal P, Birerdinc A, Younossi ZM. Non-invasive markers for hepatic fibrosis. Bmc Gastroenterology. 11: 91. PMID 21849046 DOI: 10.1186/1471-230X-11-91  1
2011 Estep M, Abawi M, Jarrar M, Wang L, Stepanova M, Elariny H, Moazez A, Goodman Z, Chandhoke V, Baranova A, Younossi ZM. Association of obestatin, ghrelin, and inflammatory cytokines in obese patients with non-alcoholic fatty liver disease. Obesity Surgery. 21: 1750-7. PMID 21744131 DOI: 10.1007/S11695-011-0475-1  1
2011 Manukhov IV, Khrul'nova SA, Baranova A, Zavilgelsky GB. Comparative analysis of the lux operons in Aliivibrio logei KCh1 (a Kamchatka Isolate) and Aliivibrio salmonicida. Journal of Bacteriology. 193: 3998-4001. PMID 21665974 DOI: 10.1128/Jb.05320-11  1
2011 Baranova A, Bode J, Manyam G, Emelianenko M. An efficient algorithm for systematic analysis of nucleotide strings suitable for siRNA design. Bmc Research Notes. 4: 168. PMID 21619643 DOI: 10.1186/1756-0500-4-168  1
2011 Baranova A, Tran TP, Birerdinc A, Younossi ZM. Systematic review: association of polycystic ovary syndrome with metabolic syndrome and non-alcoholic fatty liver disease. Alimentary Pharmacology & Therapeutics. 33: 801-14. PMID 21251033 DOI: 10.1111/J.1365-2036.2011.04579.X  1
2011 Younossi ZM, Limongi D, Stepanova M, Pierobon M, Afendy A, Mehta R, Baranova A, Liotta L, Petricoin E. Protein pathway activation associated with sustained virologic response in patients with chronic hepatitis C treated with pegylated interferon (PEG-IFN) and ribavirin (RBV). Journal of Proteome Research. 10: 774-9. PMID 21204552 DOI: 10.1021/Pr100923U  1
2011 Baranova A, Jarrar MH, Stepanova M, Johnson A, Rafiq N, Gramlich T, Chandhoke V, Younossi ZM. Association of serum adipocytokines with hepatic steatosis and fibrosis in patients with chronic hepatitis C. Digestion. 83: 32-40. PMID 20847561 DOI: 10.1159/000314592  1
2011 Page S, Chandhoke V, Baranova A. Melanin and melanogenesis in adipose tissue: possible mechanisms for abating oxidative stress and inflammation? Obesity Reviews : An Official Journal of the International Association For the Study of Obesity. 12: e21-31. PMID 20576005 DOI: 10.1111/J.1467-789X.2010.00773.X  1
2011 Younossi ZM, Page S, Rafiq N, Birerdinc A, Stepanova M, Hossain N, Afendy A, Younoszai Z, Goodman Z, Baranova A. A biomarker panel for non-alcoholic steatohepatitis (NASH) and NASH-related fibrosis. Obesity Surgery. 21: 431-9. PMID 20532833 DOI: 10.1007/S11695-010-0204-1  1
2011 Baranova A, Younossi ZM. Biomarkers for Non-invasive Diagnosis of Non-alcoholic Steatohepatitis Obesity Surgery. 21: 1318-1318. DOI: 10.1007/S11695-011-0467-1  1
2010 Biderman B, Marakhonov A, Skoblov M, Birerdinc A, Nohelty E, Page S, Khomenkov V, Chandhoke V, Sudarikov A, Nikitin E, Baranova A. Inhibition of potassium currents as a pharmacologic target for investigation in chronic lymphocytic leukemia. Drug News & Perspectives. 23: 625-31. PMID 21180648 DOI: 10.1358/dnp.2010.23.10.1507740  1
2010 Manukhov IV, Melkina OE, Goryanin II, Baranova AV, Zavilgelsky GB. The N-terminal domain of Aliivibrio fischeri LuxR is a target of the GroEL chaperonin. Journal of Bacteriology. 192: 5549-51. PMID 20729362 DOI: 10.1128/JB.00754-10  1
2010 Mehta R, Birerdinc A, Hossain N, Afendy A, Chandhoke V, Younossi Z, Baranova A. Validation of endogenous reference genes for qRT-PCR analysis of human visceral adipose samples. Bmc Molecular Biology. 11: 39. PMID 20492695 DOI: 10.1186/1471-2199-11-39  1
2010 Younossi ZM, Baranova A, Stepanova M, Page S, Calvert VS, Afendy A, Goodman Z, Chandhoke V, Liotta L, Petricoin E. Phosphoproteomic biomarkers predicting histologic nonalcoholic steatohepatitis and fibrosis. Journal of Proteome Research. 9: 3218-24. PMID 20441224 DOI: 10.1021/Pr100069E  1
2010 Birerdinc A, Nohelty E, Marakhonov A, Manyam G, Panov I, Coon S, Nikitin E, Skoblov M, Chandhoke V, Baranova A. Pro-apoptotic and antiproliferative activity of human KCNRG, a putative tumor suppressor in 13q14 region. Tumour Biology : the Journal of the International Society For Oncodevelopmental Biology and Medicine. 31: 33-45. PMID 20237900 DOI: 10.1007/S13277-009-0005-0  1
2010 Sikaroodi M, Galachiantz Y, Baranova A. Tumor markers: The potential of "omics" approach Current Molecular Medicine. 10: 249-257. PMID 20196723 DOI: 10.2174/156652410790963277  1
2010 Stepanova M, Hossain N, Afendy A, Perry K, Goodman ZD, Baranova A, Younossi Z. Hepatic gene expression of Caucasian and African-American patients with obesity-related non-alcoholic fatty liver disease. Obesity Surgery. 20: 640-50. PMID 20119733 DOI: 10.1007/S11695-010-0078-2  1
2010 Birerdinc A, Afendy A, Stepanova M, Younossi I, Manyam G, Baranova A, Younossi ZM. Functional pathway analysis of genes associated with response to treatment for chronic hepatitis C. Journal of Viral Hepatitis. 17: 730-6. PMID 20002302 DOI: 10.1111/J.1365-2893.2009.01235.X  1
2010 Baranova A, Manyam G, Giuliani A. Abstract 111: Genome-wide expression pattern as a composite biomarker of cancer Cancer Research. 70: 111-111. DOI: 10.1158/1538-7445.Am10-111  1
2009 Manyam G, Baranova A, Skoblov M, Mishra RK. SnS-Align: a graphic tool for alignment of distantly related proteins. International Journal of Bioinformatics Research and Applications. 5: 663-73. PMID 19887339 DOI: 10.1504/Ijbra.2009.029045  1
2009 Younossi ZM, Afendy A, Stepanova M, Hossain N, Younossi I, Ankrah K, Gramlich T, Baranova A. Gene expression profile associated with superimposed non-alcoholic fatty liver disease and hepatic fibrosis in patients with chronic hepatitis C. Liver International : Official Journal of the International Association For the Study of the Liver. 29: 1403-12. PMID 19515216 DOI: 10.1111/J.1478-3231.2009.02060.X  1
2009 Wojtusiak J, Michalski RS, Simanivanh T, Baranova AV. Towards application of rule learning to the meta-analysis of clinical data: an example of the metabolic syndrome. International Journal of Medical Informatics. 78: e104-11. PMID 19464941 DOI: 10.1016/J.Ijmedinf.2009.04.003  1
2009 Estep JM, Baranova A, Hossain N, Elariny H, Ankrah K, Afendy A, Chandhoke V, Younossi ZM. Expression of cytokine signaling genes in morbidly obese patients with non-alcoholic steatohepatitis and hepatic fibrosis. Obesity Surgery. 19: 617-24. PMID 19280268 DOI: 10.1007/S11695-009-9814-X  1
2009 Younossi ZM, Baranova A, Afendy A, Collantes R, Stepanova M, Manyam G, Bakshi A, Sigua CL, Chan JP, Iverson AA, Santini CD, Chang SY. Early gene expression profiles of patients with chronic hepatitis C treated with pegylated interferon-alfa and ribavirin. Hepatology (Baltimore, Md.). 49: 763-74. PMID 19140155 DOI: 10.1002/Hep.22729  1
2009 Randhawa M, Huff T, Valencia JC, Younossi Z, Chandhoke V, Hearing VJ, Baranova A. Evidence for the ectopic synthesis of melanin in human adipose tissue. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 23: 835-43. PMID 18971261 DOI: 10.1096/Fj.08-116327  1
2009 Lim HM, Kim ER, Kim JY, Chang DK, Son HJ, Rhee P, Kim JJ, Rhee JC, Kim Y, Nass FR, Kotze LMdS, Biecker E, Hausdörfer I, Grünhage F, Strunk H, ... ... Baranova A, et al. JGA Society News Digestion. 80: 136-136. DOI: 10.1159/000232948  1
2008 Baranova A. PPAR Ligands as Potential Modifiers of Breast Carcinoma Outcomes. Ppar Research. 2008: 230893. PMID 18645617 DOI: 10.1155/2008/230893  0.01
2008 Younossi ZM, Jarrar M, Nugent C, Randhawa M, Afendy M, Stepanova M, Rafiq N, Goodman Z, Chandhoke V, Baranova A. A novel diagnostic biomarker panel for obesity-related nonalcoholic steatohepatitis (NASH). Obesity Surgery. 18: 1430-7. PMID 18500507 DOI: 10.1007/S11695-008-9506-Y  1
2008 Myakishev M, Polesskaya O, Kulichkova V, Baranova A, Gause L, Konstantinova I. PCR-based detection of Pol III-transcribed transposons and its application to the rodent model of ultraviolet response. Cell Stress & Chaperones. 13: 111-6. PMID 18347948 DOI: 10.1007/S12192-008-0010-Z  1
2008 Baranova A, Younossi ZM. The future is around the corner: Noninvasive diagnosis of progressive nonalcoholic steatohepatitis. Hepatology (Baltimore, Md.). 47: 373-5. PMID 18220279 DOI: 10.1002/Hep.22140  1
2008 Jarrar MH, Baranova A, Collantes R, Ranard B, Stepanova M, Bennett C, Fang Y, Elariny H, Goodman Z, Chandhoke V, Younossi ZM. Adipokines and cytokines in non-alcoholic fatty liver disease. Alimentary Pharmacology & Therapeutics. 27: 412-21. PMID 18081738 DOI: 10.1111/J.1365-2036.2007.03586.X  1
2008 Baranova A, Younossi ZM. Adipokines and cytokines in non-alcoholic fatty liver disease. Authors' reply Alimentary Pharmacology & Therapeutics. 28: 267-268. DOI: 10.1111/J.1365-2036.2008.03724.X  1
2008 Baranova A, Younossi ZM. Reply to the Letter to the Editor: “A “Biomarker Biopsy” for the Diagnosis of NASH: Promises from CK-18 Fragments” by Yusuf Yilmaz, Engin Ulukaya, Enver Dolar Obesity Surgery. 18: 1509-1510. DOI: 10.1007/S11695-008-9641-5  1
2008 Alsheddi T, Vasin L, Meduri R, Randhawa M, Glazko G, Baranova A. SiRNAs with high specificity to a target: A systematic design by the CRM algorithm Molecular Biology. 42: 146-152. DOI: 10.1007/s11008-008-1021-7  1
2007 Baranova A, Schlauch K, Elariny H, Jarrar M, Bennett C, Nugent C, Gowder SJ, Younoszai Z, Collantes R, Chandhoke V, Younossi ZM. Gene expression patterns in hepatic tissue and visceral adipose tissue of patients with non-alcoholic fatty liver disease. Obesity Surgery. 17: 1111-8. PMID 17953248 DOI: 10.1007/S11695-007-9187-Y  1
2007 Calvert VS, Collantes R, Elariny H, Afendy A, Baranova A, Mendoza M, Goodman Z, Liotta LA, Petricoin EF, Younossi ZM. A systems biology approach to the pathogenesis of obesity-related nonalcoholic fatty liver disease using reverse phase protein microarrays for multiplexed cell signaling analysis. Hepatology (Baltimore, Md.). 46: 166-72. PMID 17596878 DOI: 10.1002/Hep.21688  1
2007 Baranova A, Liotta L, Petricoin E, Younossi ZM. The role of genomics and proteomics: technologies in studying non-alcoholic fatty liver disease. Clinics in Liver Disease. 11: 209-20, xi. PMID 17544980 DOI: 10.1016/J.Cld.2007.02.003  1
2007 Palena C, Polev DE, Tsang KY, Fernando RI, Litzinger M, Krukovskaya LL, Baranova AV, Kozlov AP, Schlom J. The human T-box mesodermal transcription factor Brachyury is a candidate target for T-cell-mediated cancer immunotherapy. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 13: 2471-8. PMID 17438107 DOI: 10.1158/1078-0432.Ccr-06-2353  1
2007 Jarrar MH, Baranova A. PPARgamma activation by thiazolidinediones (TZDs) may modulate breast carcinoma outcome: the importance of interplay with TGFbeta signalling. Journal of Cellular and Molecular Medicine. 11: 71-87. PMID 17367502 DOI: 10.1111/J.1582-4934.2007.00003.X  1
2007 Baranova A, Randhawa M, Jarrar M, Younossi ZM. Adipokines and melanocortins in the hepatic manifestation of metabolic syndrome: nonalcoholic fatty liver disease. Expert Review of Molecular Diagnostics. 7: 195-205. PMID 17331066 DOI: 10.1586/14737159.7.2.195  1
2007 Wojtusiak J, Michalski RS, Simanivanh T, Baranova AV. The natural induction system AQ21 and its application to data describing patients with metabolic syndrome: Initial results Proceedings - 6th International Conference On Machine Learning and Applications, Icmla 2007. 518-523. DOI: 10.1109/ICMLA.2007.107  1
2006 Kozlov AP, Galachyants YP, Dukhovlinov IV, Samusik NA, Baranova AV, Polev DE, Krukovskaya LL. Evolutionarily new sequences expressed in tumors. Infectious Agents and Cancer. 1: 8. PMID 17189608 DOI: 10.1186/1750-9378-1-8  1
2006 Baranova A, Gowder S, Naouar S, King S, Schlauch K, Jarrar M, Ding Y, Cook B, Chandhoke V, Christensen A. Expression profile of ovarian tumors: distinct signature of Sertoli-Leydig cell tumor. International Journal of Gynecological Cancer : Official Journal of the International Gynecological Cancer Society. 16: 1963-72. PMID 17177833 DOI: 10.1111/J.1525-1438.2006.00732.X  1
2006 Litvin O, Tiunova A, Connell-Alberts Y, Panchin Y, Baranova A. What is hidden in the pannexin treasure trove: The sneak peek and the guesswork Journal of Cellular and Molecular Medicine. 10: 613-634. PMID 16989724 DOI: 10.1111/J.1582-4934.2006.Tb00424.X  1
2006 Baranova A, Gowder SJ, Schlauch K, Elariny H, Collantes R, Afendy A, Ong JP, Goodman Z, Chandhoke V, Younossi ZM. Gene expression of leptin, resistin, and adiponectin in the white adipose tissue of obese patients with non-alcoholic fatty liver disease and insulin resistance. Obesity Surgery. 16: 1118-25. PMID 16989692 DOI: 10.1381/096089206778392149  1
2006 Vanden Abeele F, Bidaux G, Gordienko D, Beck B, Panchin YV, Baranova AV, Ivanov DV, Skryma R, Prevarskaya N. Functional implications of calcium permeability of the channel formed by pannexin 1. The Journal of Cell Biology. 174: 535-46. PMID 16908669 DOI: 10.1083/jcb.200601115  0.01
2006 Klimov D, Skoblov M, Ryazantzev A, Tyazhelova T, Baranova A. In silico search for natural antisense transcripts reveals their differential expression in human tumors. Journal of Bioinformatics and Computational Biology. 4: 515-21. PMID 16819799 DOI: 10.1142/S0219720006001795  1
2006 Stepanova M, Tiazhelova T, Skoblov M, Baranova A. Potential regulatory SNPs in promoters of human genes: a systematic approach. Molecular and Cellular Probes. 20: 348-58. PMID 16806810 DOI: 10.1016/J.Mcp.2006.03.007  1
2006 Skoblov M, Shakhbazov K, Oshchepkov D, Ivanov D, Guskova A, Ivanov D, Rubtsov P, Prasolov V, Yankovsky N, Baranova A. Human RFP2 gene promoter: unique structure and unusual strength. Biochemical and Biophysical Research Communications. 342: 859-66. PMID 16499869 DOI: 10.1016/J.Bbrc.2006.01.187  1
2005 Baranova A, Schlauch K, Gowder S, Collantes R, Chandhoke V, Younossi ZM. Microarray technology in the study of obesity and non-alcoholic fatty liver disease. Liver International : Official Journal of the International Association For the Study of the Liver. 25: 1091-6. PMID 16343057 DOI: 10.1111/J.1478-3231.2005.01183.X  1
2005 Younossi ZM, Baranova A, Ziegler K, Del Giacco L, Schlauch K, Born TL, Elariny H, Gorreta F, VanMeter A, Younoszai A, Ong JP, Goodman Z, Chandhoke V. A genomic and proteomic study of the spectrum of nonalcoholic fatty liver disease. Hepatology (Baltimore, Md.). 42: 665-74. PMID 16116632 DOI: 10.1002/Hep.20838  1
2005 Baranova A, Collantes R, Gowder SJ, Elariny H, Schlauch K, Younoszai A, King S, Randhawa M, Pusulury S, Alsheddi T, Ong JP, Martin LM, Chandhoke V, Younossi ZM. Obesity-related differential gene expression in the visceral adipose tissue. Obesity Surgery. 15: 758-65. PMID 15978142 DOI: 10.1381/0960892054222876  1
2005 Stepanova M, Tiazhelova T, Skoblov M, Baranova A. A comparative analysis of relative occurrence of transcription factor binding sites in vertebrate genomes and gene promoter areas. Bioinformatics (Oxford, England). 21: 1789-96. PMID 15699025 DOI: 10.1093/Bioinformatics/Bti307  1
2004 Baranova A, Ivanov D, Petrash N, Pestova A, Skoblov M, Kelmanson I, Shagin D, Nazarenko S, Geraymovych E, Litvin O, Tiunova A, Born TL, Usman N, Staroverov D, Lukyanov S, et al. The mammalian pannexin family is homologous to the invertebrate innexin gap junction proteins Genomics. 83: 706-716. PMID 15028292 DOI: 10.1016/J.Ygeno.2003.09.025  1
2003 Baranova A, Hammarsund M, Ivanov D, Skoblov M, Sangfelt O, Corcoran M, Borodina T, Makeeva N, Pestova A, Tyazhelova T, Nazarenko S, Gorreta F, Alsheddi T, Schlauch K, Nikitin E, et al. Distinct organization of the candidate tumor suppressor gene RFP2 in human and mouse: multiple mRNA isoforms in both species- and human-specific antisense transcript RFP2OS. Gene. 321: 103-12. PMID 14636997 DOI: 10.1016/J.Gene.2003.08.007  1
2003 Everdink WJv, Baranova A, Lummen C, Tyazhelova T, Looman MWG, Ivanov D, Verlind E, Pestova A, Faber H, Veen AYvd, Yankovsky N, Vellenga E, Buys CHCM. RFP2, c13ORF1, and FAM10A4 are the most likely tumor suppressor gene candidates for B-cell chronic lymphocytic leukemia Cancer Genetics and Cytogenetics. 146: 48-57. PMID 14499696 DOI: 10.1016/S0165-4608(03)00126-2  1
2003 Semova N, Kapanadze B, Corcoran M, Kutsenko A, Baranova A, Semov A. Molecular cloning, structural analysis, and expression of a human IRLB, MYC promoter-binding protein: new DENN domain-containing protein family emerges. Genomics. 82: 343-54. PMID 12906859 DOI: 10.1016/S0888-7543(03)00103-4  1
2000 Kapanadze B, Makeeva N, Corcoran M, Jareborg N, Hammarsund M, Baranova A, Zabarovsky E, Vorontsova O, Merup M, Gahrton G, Jansson M, Yankovsky N, Einhorn S, Oscier D, Grandér D, et al. Comparative sequence analysis of a region on human chromosome 13q14, frequently deleted in B-cell chronic lymphocytic leukemia, and its homologous region on mouse chromosome 14 Genomics. 70: 327-334. PMID 11161783 DOI: 10.1006/Geno.2000.6386  1
1998 Kapanadze B, Kashuba V, Baranova A, Rasool O, Van Everdink W, Liu Y, Syomov A, Corcoran M, Poltaraus A, Brodyansky V, Syomova N, Kazakov A, Ibbotson R, Van Den Berg A, Gizatullin R, et al. A cosmid and cDNA fine physical map of a human chromosome 13q14 region frequently lost in B-cell chronic lymphocytic leukemia and identification of a new putative tumor suppressor gene, Leu5 Febs Letters. 426: 266-270. PMID 9599022 DOI: 10.1016/S0014-5793(98)00357-3  1
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