Ronald Berezney - Publications

Affiliations: 
Biological Sciences State University of New York, Buffalo, Buffalo, NY, United States 
Area:
Cell Biology, Molecular Biology

41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Fritz AJ, Sehgal N, Pliss A, Xu J, Berezney R. Chromosome territories and the global regulation of the genome. Genes, Chromosomes & Cancer. PMID 30664301 DOI: 10.1002/gcc.22732  0.48
2015 Sehgal N, Fritz AJ, Vecerova J, Ding H, Chen Z, Stojkovic B, Bhattacharya S, Xu J, Berezney R. Large Scale Probabilistic 3-D Organization of Human Chromosome Territories. Human Molecular Genetics. PMID 26604142 DOI: 10.1093/hmg/ddv479  0.48
2015 Sehgal N, Seifert B, Ding H, Chen Z, Stojkovic B, Bhattacharya S, Xu J, Berezney R. Reorganization of the interchromosomal network during keratinocyte differentiation. Chromosoma. PMID 26490167 DOI: 10.1007/s00412-015-0546-5  0.48
2015 Pliss A, Kuzmin AN, Kachynski AV, Baev A, Berezney R, Prasad PN. Fluctuations and synchrony of RNA synthesis in nucleoli. Integrative Biology : Quantitative Biosciences From Nano to Macro. 7: 681-92. PMID 25985251 DOI: 10.1039/c5ib00008d  0.48
2015 Quintero-Rivera F, Xi QJ, Keppler-Noreuil KM, Lee JH, Higgins AW, Anchan RM, Roberts AE, Seong IS, Fan X, Lage K, Lu LY, Tao J, Hu X, Berezney R, Gelb BD, et al. MATR3 disruption in human and mouse associated with bicuspid aortic valve, aortic coarctation and patent ductus arteriosus. Human Molecular Genetics. 24: 2375-89. PMID 25574029 DOI: 10.1093/hmg/ddv004  0.48
2014 Fritz AJ, Stojkovic B, Ding H, Xu J, Bhattacharya S, Berezney R. Cell type specific alterations in interchromosomal networks across the cell cycle. Plos Computational Biology. 10: e1003857. PMID 25275626 DOI: 10.1371/journal.pcbi.1003857  0.48
2014 Sehgal N, Fritz AJ, Morris K, Torres I, Chen Z, Xu J, Berezney R. Gene density and chromosome territory shape. Chromosoma. 123: 499-513. PMID 25106753 DOI: 10.1007/s00412-014-0480-y  0.48
2014 Pliss A, Fritz AJ, Stojkovic B, Ding H, Mukherjee L, Bhattacharya S, Xu J, Berezney R. Non-random Patterns in the Distribution of NOR-bearing Chromosome Territories in Human Fibroblasts: A Network Model of Interactions. Journal of Cellular Physiology. PMID 25077974 DOI: 10.1002/jcp.24726  0.48
2014 Fritz AJ, Stojkovic B, Ding H, Xu J, Bhattacharya S, Gaile D, Berezney R. Wide-scale alterations in interchromosomal organization in breast cancer cells: defining a network of interacting chromosomes. Human Molecular Genetics. 23: 5133-46. PMID 24833717 DOI: 10.1093/hmg/ddu237  0.48
2013 Bansal N, Zhang M, Bhaskar A, Itotia P, Lee E, Shlyakhtenko LS, Lam TT, Fritz A, Berezney R, Lyubchenko YL, Stafford WF, Thapar R. Assembly of the SLIP1-SLBP complex on histone mRNA requires heterodimerization and sequential binding of SLBP followed by SLIP1. Biochemistry. 52: 520-36. PMID 23286197 DOI: 10.1021/bi301074r  0.48
2013 Fritz A, Sinha S, Marella N, Berezney R. Alterations in replication timing of cancer-related genes in malignant human breast cancer cells. Journal of Cellular Biochemistry. 114: 1074-83. PMID 23161755 DOI: 10.1002/jcb.24447  0.48
2013 Zucker SN, Bancroft TA, Place DE, Des Soye B, Bagati A, Berezney R. A dominant negative Cx43 mutant differentially affects tumorigenic and invasive properties in human metastatic melanoma cells. Journal of Cellular Physiology. 228: 853-9. PMID 23042412 DOI: 10.1002/jcp.24235  0.48
2013 Pliss A, Malyavantham KS, Bhattacharya S, Berezney R. Chromatin dynamics in living cells: identification of oscillatory motion. Journal of Cellular Physiology. 228: 609-16. PMID 22886456 DOI: 10.1002/jcp.24169  0.64
2012 Krishnan N, Lam TT, Fritz A, Rempinski D, O'Loughlin K, Minderman H, Berezney R, Marzluff WF, Thapar R. The prolyl isomerase Pin1 targets stem-loop binding protein (SLBP) to dissociate the SLBP-histone mRNA complex linking histone mRNA decay with SLBP ubiquitination. Molecular and Cellular Biology. 32: 4306-22. PMID 22907757 DOI: 10.1128/MCB.00382-12  0.48
2012 Zucker SN, Zirnheld J, Bagati A, DiSanto TM, Des Soye B, Wawrzyniak JA, Etemadi K, Nikiforov M, Berezney R. Preferential induction of apoptotic cell death in melanoma cells as compared with normal keratinocytes using a non-thermal plasma torch. Cancer Biology & Therapy. 13: 1299-306. PMID 22895073 DOI: 10.4161/cbt.21787  0.48
2010 Stojkovic B, Zhu Y, Xu J, Fritz A, Zeitz MJ, Vecerova J, Berezney R. Computing maximum association graph in microscopic nucleus images. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 13: 530-7. PMID 20879356 DOI: 10.1007/978-3-642-15745-5_65  0.48
2010 Malyavantham KS, Bhattacharya S, Berezney R. The architecture of functional neighborhoods within the mammalian cell nucleus. Advances in Enzyme Regulation. 50: 126-34. PMID 19948182 DOI: 10.1016/j.advenzreg.2009.10.003  0.64
2009 Marella NV, Seifert B, Nagarajan P, Sinha S, Berezney R. Chromosomal rearrangements during human epidermal keratinocyte differentiation. Journal of Cellular Physiology. 221: 139-46. PMID 19626667 DOI: 10.1002/jcp.21855  0.48
2009 Marella NV, Malyavantham KS, Wang J, Matsui S, Liang P, Berezney R. Cytogenetic and cDNA microarray expression analysis of MCF10 human breast cancer progression cell lines. Cancer Research. 69: 5946-53. PMID 19584277 DOI: 10.1158/0008-5472.CAN-09-0420  0.64
2009 Zeitz MJ, Malyavantham KS, Seifert B, Berezney R. Matrin 3: chromosomal distribution and protein interactions. Journal of Cellular Biochemistry. 108: 125-33. PMID 19562669 DOI: 10.1002/jcb.22234  0.64
2009 Zeitz MJ, Mukherjee L, Bhattacharya S, Xu J, Berezney R. A probabilistic model for the arrangement of a subset of human chromosome territories in WI38 human fibroblasts. Journal of Cellular Physiology. 221: 120-9. PMID 19507193 DOI: 10.1002/jcp.21842  0.48
2009 Marella NV, Bhattacharya S, Mukherjee L, Xu J, Berezney R. Cell type specific chromosome territory organization in the interphase nucleus of normal and cancer cells. Journal of Cellular Physiology. 221: 130-8. PMID 19496171 DOI: 10.1002/jcp.21836  0.48
2009 Pliss A, Malyavantham K, Bhattacharya S, Zeitz M, Berezney R. Chromatin dynamics is correlated with replication timing. Chromosoma. 118: 459-70. PMID 19296120 DOI: 10.1007/s00412-009-0208-6  0.64
2009 Zeitz MJ, Marella NV, Malyavantham KS, Goetze S, Bode J, Raska I, Berezney R. Organization of the amplified type I interferon gene cluster and associated chromosome regions in the interphase nucleus of human osteosarcoma cells. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 17: 305-19. PMID 19283497 DOI: 10.1007/s10577-009-9023-4  0.48
2008 Marella NV, Zeitz MJ, Malyavantham KS, Pliss A, Matsui S, Goetze S, Bode J, Raska I, Berezney R. Ladder-like amplification of the type I interferon gene cluster in the human osteosarcoma cell line MG63. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 16: 1177-92. PMID 19005637 DOI: 10.1007/s10577-008-1267-x  0.48
2008 Malyavantham KS, Bhattacharya S, Barbeitos M, Mukherjee L, Xu J, Fackelmayer FO, Berezney R. Identifying functional neighborhoods within the cell nucleus: proximity analysis of early S-phase replicating chromatin domains to sites of transcription, RNA polymerase II, HP1gamma, matrin 3 and SAF-A. Journal of Cellular Biochemistry. 105: 391-403. PMID 18618731 DOI: 10.1002/jcb.21834  0.48
2008 Malyavantham KS, Bhattacharya S, Alonso WD, Acharya R, Berezney R. Spatio-temporal dynamics of replication and transcription sites in the mammalian cell nucleus. Chromosoma. 117: 553-67. PMID 18600338 DOI: 10.1007/s00412-008-0172-6  0.64
2006 Bhattacharya S, Acharya R, Pliss A, Malyavantham KS, Berezney R. Comparison of intensity based similarity measures for matching genomic structures in microscopic images of living cells. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 3057-61. PMID 17946542 DOI: 10.1109/IEMBS.2006.260165  0.64
2006 Mukherjee L, Singh V, Xu J, Malyavantham KS, Berezney R. On mobility analysis of functional sites from time lapse microscopic image sequences of living cell nucleus. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 9: 577-85. PMID 17354819  0.48
2005 Bhattacharya S, Acharya R, Pliss A, Malyavantham KS, Berezney R. Automated matching of genomic structures in microscopic images of living cells using an information theoretic approach. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 6: 6425-8. PMID 17281739 DOI: 10.1109/IEMBS.2005.1615969  0.64
2005 Mukherjee L, Lin M, Xu J, Berezney R. Motion tracking and intensity surface recovery in microscopic nuclear images. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 8: 876-84. PMID 16685929 DOI: 10.1007/11566465_108  0.48
2005 Berezney R, Malyavantham KS, Pliss A, Bhattacharya S, Acharya R. Spatio-temporal dynamics of genomic organization and function in the mammalian cell nucleus. Advances in Enzyme Regulation. 45: 17-26. PMID 16139341 DOI: 10.1016/j.advenzreg.2005.02.013  0.64
2005 Giordano G, Sánchez-Pérez AM, Montoliu C, Berezney R, Malyavantham K, Costa LG, Calvete JJ, Felipo V. Activation of NMDA receptors induces protein kinase A-mediated phosphorylation and degradation of matrin 3. Blocking these effects prevents NMDA-induced neuronal death. Journal of Neurochemistry. 94: 808-18. PMID 16000164 DOI: 10.1111/j.1471-4159.2005.03235.x  0.32
2005 Fidlerová H, Masata M, Malínský J, Fialová M, Cvacková Z, Louzecká A, Koberna K, Berezney R, Raska I. Replication-coupled modulation of early replicating chromatin domains detected by anti-actin antibody. Journal of Cellular Biochemistry. 94: 899-916. PMID 15714458 DOI: 10.1002/jcb.20374  0.48
2005 Pliss A, Koberna K, Vecerová J, Malínský J, Masata M, Fialová M, Raska I, Berezney R. Spatio-temporal dynamics at rDNA foci: global switching between DNA replication and transcription. Journal of Cellular Biochemistry. 94: 554-65. PMID 15543556 DOI: 10.1002/jcb.20317  0.48
2005 Koberna K, Ligasová A, Malínský J, Pliss A, Siegel AJ, Cvacková Z, Fidlerová H, Masata M, Fialová M, Raska I, Berezney R. Electron microscopy of DNA replication in 3-D: evidence for similar-sized replication foci throughout S-phase. Journal of Cellular Biochemistry. 94: 126-38. PMID 15523671 DOI: 10.1002/jcb.20300  0.48
2004 Bhattacharya S, Malyavantham KS, Acharya R, Berezney R. Fractal analysis of replication site images of the human cell nucleus. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2: 1443-6. PMID 17271966 DOI: 10.1109/IEMBS.2004.1403446  0.64
2003 Somanathan S, Stachowiak EK, Siegel AJ, Stachowiak MK, Berezney R. Nuclear matrix bound fibroblast growth factor receptor is associated with splicing factor rich and transcriptionally active nuclear speckles. Journal of Cellular Biochemistry. 90: 856-69. PMID 14587039 DOI: 10.1002/jcb.10672  0.48
2003 Stachowiak MK, Fang X, Myers JM, Dunham SM, Berezney R, Maher PA, Stachowiak EK. Integrative nuclear FGFR1 signaling (INFS) as a part of a universal "feed-forward-and-gate" signaling module that controls cell growth and differentiation. Journal of Cellular Biochemistry. 90: 662-91. PMID 14587025 DOI: 10.1002/jcb.10606  0.48
2003 Tabellini G, Bortul R, Santi S, Riccio M, Baldini G, Cappellini A, Billi AM, Berezney R, Ruggeri A, Cocco L, Martelli AM. Diacylglycerol kinase-theta is localized in the speckle domains of the nucleus. Experimental Cell Research. 287: 143-54. PMID 12799190 DOI: 10.1016/S0014-4827(03)00115-0  0.48
2002 Peng H, Myers J, Fang X, Stachowiak EK, Maher PA, Martins GG, Popescu G, Berezney R, Stachowiak MK. Integrative nuclear FGFR1 signaling (INFS) pathway mediates activation of the tyrosine hydroxylase gene by angiotensin II, depolarization and protein kinase C Journal of Neurochemistry. 81: 506-524. PMID 12065659 DOI: 10.1046/j.1471-4159.2002.00833.x  0.48
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