| Year |
Citation |
Score |
| 2019 |
Fritz AJ, Sehgal N, Pliss A, Xu J, Berezney R. Chromosome territories and the global regulation of the genome. Genes, Chromosomes & Cancer. PMID 30664301 DOI: 10.1002/Gcc.22732 |
0.437 |
|
| 2015 |
Sehgal N, Fritz AJ, Vecerova J, Ding H, Chen Z, Stojkovic B, Bhattacharya S, Xu J, Berezney R. Large Scale Probabilistic 3-D Organization of Human Chromosome Territories. Human Molecular Genetics. PMID 26604142 DOI: 10.1093/Hmg/Ddv479 |
0.415 |
|
| 2015 |
Sehgal N, Seifert B, Ding H, Chen Z, Stojkovic B, Bhattacharya S, Xu J, Berezney R. Reorganization of the interchromosomal network during keratinocyte differentiation. Chromosoma. PMID 26490167 DOI: 10.1007/S00412-015-0546-5 |
0.384 |
|
| 2015 |
Quintero-Rivera F, Xi QJ, Keppler-Noreuil KM, Lee JH, Higgins AW, Anchan RM, Roberts AE, Seong IS, Fan X, Lage K, Lu LY, Tao J, Hu X, Berezney R, Gelb BD, et al. MATR3 disruption in human and mouse associated with bicuspid aortic valve, aortic coarctation and patent ductus arteriosus. Human Molecular Genetics. 24: 2375-89. PMID 25574029 DOI: 10.1093/Hmg/Ddv004 |
0.307 |
|
| 2014 |
Fritz AJ, Stojkovic B, Ding H, Xu J, Bhattacharya S, Berezney R. Cell type specific alterations in interchromosomal networks across the cell cycle. Plos Computational Biology. 10: e1003857. PMID 25275626 DOI: 10.1371/Journal.Pcbi.1003857 |
0.351 |
|
| 2014 |
Fritz AJ, Stojkovic B, Ding H, Xu J, Bhattacharya S, Gaile D, Berezney R. Wide-scale alterations in interchromosomal organization in breast cancer cells: defining a network of interacting chromosomes. Human Molecular Genetics. 23: 5133-46. PMID 24833717 DOI: 10.1093/Hmg/Ddu237 |
0.377 |
|
| 2013 |
Fritz A, Sinha S, Marella N, Berezney R. Alterations in replication timing of cancer-related genes in malignant human breast cancer cells. Journal of Cellular Biochemistry. 114: 1074-83. PMID 23161755 DOI: 10.1002/Jcb.24447 |
0.763 |
|
| 2013 |
Pliss A, Malyavantham KS, Bhattacharya S, Berezney R. Chromatin dynamics in living cells: identification of oscillatory motion. Journal of Cellular Physiology. 228: 609-16. PMID 22886456 DOI: 10.1002/Jcp.24169 |
0.712 |
|
| 2013 |
Ding H, Stojkovic B, Berezney R, Xu J. Gauging association patterns of chromosome territories via chromatic median Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 1296-1303. DOI: 10.1109/CVPR.2013.171 |
0.338 |
|
| 2010 |
Malyavantham KS, Bhattacharya S, Berezney R. The architecture of functional neighborhoods within the mammalian cell nucleus. Advances in Enzyme Regulation. 50: 126-34. PMID 19948182 DOI: 10.1016/J.Advenzreg.2009.10.003 |
0.745 |
|
| 2009 |
Marella NV, Seifert B, Nagarajan P, Sinha S, Berezney R. Chromosomal rearrangements during human epidermal keratinocyte differentiation. Journal of Cellular Physiology. 221: 139-46. PMID 19626667 DOI: 10.1002/Jcp.21855 |
0.782 |
|
| 2009 |
Marella NV, Malyavantham KS, Wang J, Matsui S, Liang P, Berezney R. Cytogenetic and cDNA microarray expression analysis of MCF10 human breast cancer progression cell lines. Cancer Research. 69: 5946-53. PMID 19584277 DOI: 10.1158/0008-5472.Can-09-0420 |
0.761 |
|
| 2009 |
Zeitz MJ, Malyavantham KS, Seifert B, Berezney R. Matrin 3: chromosomal distribution and protein interactions. Journal of Cellular Biochemistry. 108: 125-33. PMID 19562669 DOI: 10.1002/Jcb.22234 |
0.738 |
|
| 2009 |
Zeitz MJ, Mukherjee L, Bhattacharya S, Xu J, Berezney R. A probabilistic model for the arrangement of a subset of human chromosome territories in WI38 human fibroblasts. Journal of Cellular Physiology. 221: 120-9. PMID 19507193 DOI: 10.1002/Jcp.21842 |
0.446 |
|
| 2009 |
Marella NV, Bhattacharya S, Mukherjee L, Xu J, Berezney R. Cell type specific chromosome territory organization in the interphase nucleus of normal and cancer cells. Journal of Cellular Physiology. 221: 130-8. PMID 19496171 DOI: 10.1002/Jcp.21836 |
0.796 |
|
| 2009 |
Pliss A, Malyavantham K, Bhattacharya S, Zeitz M, Berezney R. Chromatin dynamics is correlated with replication timing. Chromosoma. 118: 459-70. PMID 19296120 DOI: 10.1007/S00412-009-0208-6 |
0.735 |
|
| 2009 |
Zeitz MJ, Marella NV, Malyavantham KS, Goetze S, Bode J, Raska I, Berezney R. Organization of the amplified type I interferon gene cluster and associated chromosome regions in the interphase nucleus of human osteosarcoma cells. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 17: 305-19. PMID 19283497 DOI: 10.1007/S10577-009-9023-4 |
0.77 |
|
| 2008 |
Marella NV, Zeitz MJ, Malyavantham KS, Pliss A, Matsui S, Goetze S, Bode J, Raska I, Berezney R. Ladder-like amplification of the type I interferon gene cluster in the human osteosarcoma cell line MG63. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 16: 1177-92. PMID 19005637 DOI: 10.1007/S10577-008-1267-X |
0.76 |
|
| 2008 |
Malyavantham KS, Bhattacharya S, Barbeitos M, Mukherjee L, Xu J, Fackelmayer FO, Berezney R. Identifying functional neighborhoods within the cell nucleus: proximity analysis of early S-phase replicating chromatin domains to sites of transcription, RNA polymerase II, HP1gamma, matrin 3 and SAF-A. Journal of Cellular Biochemistry. 105: 391-403. PMID 18618731 DOI: 10.1002/Jcb.21834 |
0.732 |
|
| 2008 |
Malyavantham KS, Bhattacharya S, Alonso WD, Acharya R, Berezney R. Spatio-temporal dynamics of replication and transcription sites in the mammalian cell nucleus. Chromosoma. 117: 553-67. PMID 18600338 DOI: 10.1007/S00412-008-0172-6 |
0.716 |
|
| 2006 |
Bhattacharya S, Acharya R, Pliss A, Malyavantham KS, Berezney R. Comparison of intensity based similarity measures for matching genomic structures in microscopic images of living cells. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 3057-61. PMID 17946542 DOI: 10.1109/IEMBS.2006.260165 |
0.676 |
|
| 2006 |
Mukherjee L, Singh V, Xu J, Malyavantham KS, Berezney R. On mobility analysis of functional sites from time lapse microscopic image sequences of living cell nucleus. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 9: 577-85. PMID 17354819 |
0.683 |
|
| 2005 |
Bhattacharya S, Acharya R, Pliss A, Malyavantham KS, Berezney R. Automated matching of genomic structures in microscopic images of living cells using an information theoretic approach. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 6: 6425-8. PMID 17281739 DOI: 10.1109/IEMBS.2005.1615969 |
0.679 |
|
| 2005 |
Berezney R, Malyavantham KS, Pliss A, Bhattacharya S, Acharya R. Spatio-temporal dynamics of genomic organization and function in the mammalian cell nucleus. Advances in Enzyme Regulation. 45: 17-26. PMID 16139341 DOI: 10.1016/J.Advenzreg.2005.02.013 |
0.671 |
|
| 2005 |
Giordano G, Sánchez-Pérez AM, Montoliu C, Berezney R, Malyavantham K, Costa LG, Calvete JJ, Felipo V. Activation of NMDA receptors induces protein kinase A-mediated phosphorylation and degradation of matrin 3. Blocking these effects prevents NMDA-induced neuronal death. Journal of Neurochemistry. 94: 808-18. PMID 16000164 DOI: 10.1111/J.1471-4159.2005.03235.X |
0.656 |
|
| 2005 |
Fidlerová H, Masata M, Malínský J, Fialová M, Cvacková Z, Louzecká A, Koberna K, Berezney R, Raska I. Replication-coupled modulation of early replicating chromatin domains detected by anti-actin antibody. Journal of Cellular Biochemistry. 94: 899-916. PMID 15714458 DOI: 10.1002/Jcb.20374 |
0.391 |
|
| 2005 |
Pliss A, Koberna K, Vecerová J, Malínský J, Masata M, Fialová M, Raska I, Berezney R. Spatio-temporal dynamics at rDNA foci: global switching between DNA replication and transcription. Journal of Cellular Biochemistry. 94: 554-65. PMID 15543556 DOI: 10.1002/Jcb.20317 |
0.431 |
|
| 2004 |
Bhattacharya S, Malyavantham KS, Acharya R, Berezney R. Fractal analysis of replication site images of the human cell nucleus. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2: 1443-6. PMID 17271966 DOI: 10.1109/IEMBS.2004.1403446 |
0.695 |
|
| 2003 |
Somanathan S, Stachowiak EK, Siegel AJ, Stachowiak MK, Berezney R. Nuclear matrix bound fibroblast growth factor receptor is associated with splicing factor rich and transcriptionally active nuclear speckles. Journal of Cellular Biochemistry. 90: 856-69. PMID 14587039 DOI: 10.1002/Jcb.10672 |
0.733 |
|
| 2003 |
Stachowiak MK, Fang X, Myers JM, Dunham SM, Berezney R, Maher PA, Stachowiak EK. Integrative nuclear FGFR1 signaling (INFS) as a part of a universal "feed-forward-and-gate" signaling module that controls cell growth and differentiation. Journal of Cellular Biochemistry. 90: 662-91. PMID 14587025 DOI: 10.1002/Jcb.10606 |
0.374 |
|
| 2003 |
Tabellini G, Bortul R, Santi S, Riccio M, Baldini G, Cappellini A, Billi AM, Berezney R, Ruggeri A, Cocco L, Martelli AM. Diacylglycerol kinase-theta is localized in the speckle domains of the nucleus. Experimental Cell Research. 287: 143-54. PMID 12799190 DOI: 10.1016/S0014-4827(03)00115-0 |
0.377 |
|
| 2002 |
Berezney R. Regulating the mammalian genome: the role of nuclear architecture. Advances in Enzyme Regulation. 42: 39-52. PMID 12123705 DOI: 10.1016/S0065-2571(01)00041-3 |
0.435 |
|
| 2002 |
Peng H, Myers J, Fang X, Stachowiak EK, Maher PA, Martins GG, Popescu G, Berezney R, Stachowiak MK. Integrative nuclear FGFR1 signaling (INFS) pathway mediates activation of the tyrosine hydroxylase gene by angiotensin II, depolarization and protein kinase C Journal of Neurochemistry. 81: 506-524. PMID 12065659 DOI: 10.1046/J.1471-4159.2002.00833.X |
0.35 |
|
| 2000 |
Berezney R, Dubey DD, Huberman JA. Heterogeneity of eukaryotic replicons, replicon clusters, and replication foci. Chromosoma. 108: 471-84. PMID 10794569 DOI: 10.1007/S004120050399 |
0.375 |
|
| 1999 |
Wei X, Somanathan S, Samarabandu J, Berezney R. Three-dimensional visualization of transcription sites and their association with splicing factor-rich nuclear speckles. The Journal of Cell Biology. 146: 543-58. PMID 10444064 DOI: 10.1083/Jcb.146.3.543 |
0.72 |
|
| 1999 |
Ma H, Siegel AJ, Berezney R. Association of chromosome territories with the nuclear matrix. Disruption of human chromosome territories correlates with the release of a subset of nuclear matrix proteins. The Journal of Cell Biology. 146: 531-42. PMID 10444063 DOI: 10.1083/Jcb.146.3.531 |
0.437 |
|
| 1999 |
Ma H, Samarabandu J, Devdhar RS, Acharya R, Cheng PC, Meng C, Berezney R. Spatial and temporal dynamics of DNA replication sites in mammalian cells. The Journal of Cell Biology. 143: 1415-25. PMID 9852140 DOI: 10.1083/Jcb.143.6.1415 |
0.339 |
|
| 1998 |
Berezney R, Wei X. The new paradigm: Integrating genomic function and nuclear architecture. Journal of Cellular Biochemistry. 72: 238-242. PMID 29345840 DOI: 10.1002/(Sici)1097-4644(1998)72:30/31+<238::Aid-Jcb29>3.0.Co;2-F |
0.449 |
|
| 1998 |
Wei X, Samarabandu J, Devdhar RS, Siegel AJ, Acharya R, Berezney R. Segregation of transcription and replication sites into higher order domains. Science (New York, N.Y.). 281: 1502-6. PMID 9727975 DOI: 10.1126/Science.281.5382.1502 |
0.329 |
|
| 1998 |
Patturajan M, Wei X, Berezney R, Corden JL. A nuclear matrix protein interacts with the phosphorylated C-terminal domain of RNA polymerase II. Molecular and Cellular Biology. 18: 2406-15. PMID 9528809 DOI: 10.1128/Mcb.18.4.2406 |
0.319 |
|
| 1998 |
Mortillaro MJ, Berezney R. Matrin CYP, an SR-rich cyclophilin that associates with the nuclear matrix and splicing factors. The Journal of Biological Chemistry. 273: 8183-92. PMID 9525923 DOI: 10.1074/Jbc.273.14.8183 |
0.329 |
|
| 1996 |
Berezney R, Mortillaro M, Ma H, Meng C, Samarabandu J, Wei X, Somanathan S, Liou WS, Pan SJ, Cheng PC. Connecting nuclear architecture and genomic function. Journal of Cellular Biochemistry. 62: 223-6. PMID 8844402 DOI: 10.1002/(Sici)1097-4644(199608)62:2<223::Aid-Jcb10>3.0.Co;2-M |
0.706 |
|
| 1996 |
Mortillaro MJ, Blencowe BJ, Wei X, Nakayasu H, Du L, Warren SL, Sharp PA, Berezney R. A hyperphosphorylated form of the large subunit of RNA polymerase II is associated with splicing complexes and the nuclear matrix. Proceedings of the National Academy of Sciences of the United States of America. 93: 8253-7. PMID 8710856 DOI: 10.1073/Pnas.93.16.8253 |
0.323 |
|
| 1996 |
Berezney R, Mortillaro MJ, Ma H, Wei X, Samarabandu J. The nuclear matrix: a structural milieu for genomic function. International Review of Cytology. 1-65. PMID 8575878 DOI: 10.1016/S0074-7696(08)61228-0 |
0.396 |
|
| 1992 |
Berezney R. The nuclear matrix: a heuristic model for investigating genomic organization and function in the cell nucleus. Journal of Cellular Biochemistry. 47: 109-23. PMID 1757479 DOI: 10.1002/Jcb.240470204 |
0.388 |
|
| 1991 |
Nakayasu H, Berezney R. Nuclear matrins: identification of the major nuclear matrix proteins. Proceedings of the National Academy of Sciences of the United States of America. 88: 10312-6. PMID 1946450 DOI: 10.1073/Pnas.88.22.10312 |
0.301 |
|
| 1989 |
Nakayasu H, Berezney R. Mapping replicational sites in the eucaryotic cell nucleus. The Journal of Cell Biology. 108: 1-11. PMID 2910875 DOI: 10.1083/Jcb.108.1.1 |
0.406 |
|
| 1985 |
Smith HC, Berezney R, Brewster JM, Rekosh D. Properties of adenoviral DNA bound to the nuclear matrix Biochemistry. 24: 1197-1202. PMID 4096901 DOI: 10.1021/Bi00326A022 |
0.306 |
|
| 1985 |
Tubo RA, Smith HC, Berezney R. The nuclear matrix continues DNA synthesis at in vivo replicational forks. Biochimica Et Biophysica Acta. 825: 326-34. PMID 4016121 DOI: 10.1016/0167-4781(85)90020-X |
0.313 |
|
| 1984 |
Smith HC, Puvion E, Buchholtz LA, Berezney R. Spatial distribution of DNA loop attachment and replicational sites in the nuclear matrix. The Journal of Cell Biology. 99: 1794-802. PMID 6490720 DOI: 10.1083/Jcb.99.5.1794 |
0.325 |
|
| 1983 |
Smith HC, Berezney R. Dynamic domains of DNA polymerase alpha in regenerating rat liver. Biochemistry. 22: 3042-6. PMID 6882735 DOI: 10.1021/Bi00282A003 |
0.305 |
|
| 1982 |
Basler J, Hastie ND, Pietras D, Matsui SI, Sandberg AA, Berezney R. Hybridization of nuclear matrix attached deoxyribonucleic acid fragments. Biochemistry. 20: 6921-9. PMID 7317362 DOI: 10.1021/Bi00527A027 |
0.329 |
|
| 1982 |
Berezney R, Buchholtz LA. Isolation and characterization of rat liver nuclear matrices containing high molecular weight deoxyribonucleic acid. Biochemistry. 20: 4995-5002. PMID 7295663 DOI: 10.1021/Bi00520A028 |
0.301 |
|
| 1981 |
Smith HC, Berezney R. DNA polymerase alpha is tightly bound to the nuclear matrix of actively replicating liver. Biochemical and Biophysical Research Communications. 97: 1541-7. PMID 7213377 DOI: 10.1016/S0006-291X(80)80041-6 |
0.302 |
|
| 1981 |
Berezney R, Buchholtz LA. Dynamic association of replicating DNA fragments with the nuclear matrix of regenerating liver. Experimental Cell Research. 132: 1-13. PMID 7202556 DOI: 10.1016/0014-4827(81)90076-8 |
0.313 |
|
| 1980 |
Berezney R. Matricin fibrils: isolation of the primary nuclear matrix polypeptides. Cell Biology International Reports. 4: 167-73. PMID 7388967 DOI: 10.1016/0309-1651(80)90071-5 |
0.316 |
|
| 1972 |
Keenan TW, Berezney R, Crane FL. Lipid composition of further purified bovine liver nuclear membranes. Lipids. 7: 212-5. PMID 4336571 DOI: 10.1007/Bf02533066 |
0.397 |
|
| 1971 |
Berezney R, Crane FL. Cytochromes in bovine liver nuclear membranes. Biochemical and Biophysical Research Communications. 43: 1017-23. PMID 4398131 DOI: 10.1016/0006-291X(71)90563-8 |
0.397 |
|
| 1970 |
Berezney R, Funk LK, Crane FL. The isolation of nuclear membrane from a large-scale preparation of bovine liver nuclei. Biochimica Et Biophysica Acta. 203: 531-46. PMID 4399857 DOI: 10.1016/0005-2736(70)90190-2 |
0.446 |
|
| 1970 |
Berezney R, Funk LK, Crane FL. Nuclear electron transport. I. Electron transport enzymes in bovine liver nuclei and nuclear membrane. Biochemical and Biophysical Research Communications. 38: 93-8. PMID 4392152 DOI: 10.1016/0006-291X(70)91088-0 |
0.414 |
|
| 1970 |
Keenan TW, Berezney R, Funk LK, Crane FL. Lipid composition of nuclear membranes isolated from bovine liver. Biochimica Et Biophysica Acta. 203: 547-54. PMID 4332052 DOI: 10.1016/0005-2736(70)90191-4 |
0.383 |
|
| 1970 |
Berezney R, Funk LK, Crane FL. Electron transport in mammalian nuclei. II. Oxidative enzmes in a large-scale preparation of bovine liver nuclei. Biochimica Et Biophysica Acta. 223: 61-70. PMID 4320758 DOI: 10.1016/0005-2728(70)90132-5 |
0.414 |
|
| 1970 |
Berezney R, Awasthi YC, Crane FL. The relation of phospholipid and membrane-bound ATPase in mitochondrial electron transport particles Journal of Bioenergetics. 1: 457-465. DOI: 10.1007/Bf01516907 |
0.378 |
|
| 1970 |
Berezney R, Awasthi YC, Funk LK, Crane FL. The relation of phospholipid and membrane structure in mitochondrial electron transport particles Journal of Bioenergetics. 1: 445-456. DOI: 10.1007/Bf01516906 |
0.381 |
|
| 1969 |
Awasthi YC, Berezney R, Ruzicka FJ, Crane FL. Action of phospholipase A on mitochondrial cristae Bba - Bioenergetics. 189: 457-460. PMID 5363982 DOI: 10.1016/0005-2728(69)90179-0 |
0.377 |
|
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