Russ P. Carstens - Publications

Affiliations: 
University of Pennsylvania, Philadelphia, PA, United States 
Area:
Molecular Biology, Cell Biology, Bioinformatics Biology

28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Zhang Z, Pan Z, Ying Y, Xie Z, Adhikari S, Phillips J, Carstens RP, Black DL, Wu Y, Xing Y. Deep-learning augmented RNA-seq analysis of transcript splicing. Nature Methods. 16: 307-310. PMID 30923373 DOI: 10.1038/s41592-019-0351-9  0.52
2017 Rohacek AM, Bebee TW, Tilton RK, Radens CM, McDermott-Roe C, Peart N, Kaur M, Zaykaner M, Cieply B, Musunuru K, Barash Y, Germiller JA, Krantz ID, Carstens RP, Epstein DJ. ESRP1 Mutations Cause Hearing Loss due to Defects in Alternative Splicing that Disrupt Cochlear Development. Developmental Cell. 43: 318-331.e5. PMID 29107558 DOI: 10.1016/j.devcel.2017.09.026  0.52
2016 Bebee TW, Sims-Lucas S, Park JW, Bushnell D, Cieply B, Xing Y, Bates CM, Carstens RP. Ablation of the epithelial-specific splicing factor Esrp1 results in ureteric branching defects and reduced nephron number. Developmental Dynamics : An Official Publication of the American Association of Anatomists. PMID 27404344 DOI: 10.1002/dvdy.24431  0.52
2016 Cieply B, Park JW, Nakauka-Ddamba A, Bebee TW, Guo Y, Shang X, Lengner CJ, Xing Y, Carstens RP. Multiphasic and Dynamic Changes in Alternative Splicing during Induction of Pluripotency Are Coordinated by Numerous RNA-Binding Proteins. Cell Reports. PMID 27050523 DOI: 10.1016/j.celrep.2016.03.025  0.52
2016 Yang Y, Park JW, Bebee TW, Warzecha CC, Guo Y, Shang X, Xing Y, Carstens RP. Determination of a comprehensive alternative splicing regulatory network and the combinatorial regulation by key factors during the epithelial to mesenchymal transition. Molecular and Cellular Biology. PMID 27044866 DOI: 10.1128/MCB.00019-16  1
2015 Bhate A, Parker DJ, Bebee TW, Ahn J, Arif W, Rashan EH, Chorghade S, Chau A, Lee JH, Anakk S, Carstens RP, Xiao X, Kalsotra A. ESRP2 controls an adult splicing programme in hepatocytes to support postnatal liver maturation. Nature Communications. 6: 8768. PMID 26531099 DOI: 10.1038/ncomms9768  0.52
2015 Bebee TW, Park JW, Sheridan KI, Warzecha CC, Cieply BW, Rohacek AM, Xing Y, Carstens RP. The splicing regulators Esrp1 and Esrp2 direct an epithelial splicing program essential for mammalian development. Elife. 4. PMID 26371508 DOI: 10.7554/eLife.08954  0.52
2015 Cieply B, Carstens RP. Functional roles of alternative splicing factors in human disease. Wiley Interdisciplinary Reviews. Rna. 6: 311-26. PMID 25630614 DOI: 10.1002/wrna.1276  0.52
2014 Bebee TW, Cieply BW, Carstens RP. Genome-wide activities of RNA binding proteins that regulate cellular changes in the epithelial to mesenchymal transition (EMT). Advances in Experimental Medicine and Biology. 825: 267-302. PMID 25201109 DOI: 10.1007/978-1-4939-1221-6_8  0.52
2013 Heinicke LA, Nabet B, Shen S, Jiang P, van Zalen S, Cieply B, Russell JE, Xing Y, Carstens RP. The RNA binding protein RBM38 (RNPC1) regulates splicing during late erythroid differentiation. Plos One. 8: e78031. PMID 24250749 DOI: 10.1371/journal.pone.0078031  0.52
2013 Ray D, Kazan H, Cook KB, Weirauch MT, Najafabadi HS, Li X, Gueroussov S, Albu M, Zheng H, Yang A, Na H, Irimia M, Matzat LH, Dale RK, Smith SA, ... ... Carstens RP, et al. A compendium of RNA-binding motifs for decoding gene regulation. Nature. 499: 172-7. PMID 23846655 DOI: 10.1038/nature12311  0.52
2012 Di Modugno F, Iapicca P, Boudreau A, Mottolese M, Terrenato I, Perracchio L, Carstens RP, Santoni A, Bissell MJ, Nisticò P. Splicing program of human MENA produces a previously undescribed isoform associated with invasive, mesenchymal-like breast tumors. Proceedings of the National Academy of Sciences of the United States of America. 109: 19280-5. PMID 23129656 DOI: 10.1073/pnas.1214394109  0.52
2012 Warzecha CC, Carstens RP. Complex changes in alternative pre-mRNA splicing play a central role in the epithelial-to-mesenchymal transition (EMT). Seminars in Cancer Biology. 22: 417-27. PMID 22548723 DOI: 10.1016/j.semcancer.2012.04.003  1
2012 Warzecha CC, Hovhannisyan R, Carstens RP. Dynamic fluorescent and luminescent reporters for cell-based splicing screens. Methods in Molecular Biology (Clifton, N.J.). 867: 273-87. PMID 22454068 DOI: 10.1007/978-1-61779-767-5_18  1
2012 Shen S, Park JW, Huang J, Dittmar KA, Lu ZX, Zhou Q, Carstens RP, Xing Y. MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data. Nucleic Acids Research. 40: e61. PMID 22266656 DOI: 10.1093/nar/gkr1291  0.52
2010 Warzecha CC, Jiang P, Amirikian K, Dittmar KA, Lu H, Shen S, Guo W, Xing Y, Carstens RP. An ESRP-regulated splicing programme is abrogated during the epithelial-mesenchymal transition. The Embo Journal. 29: 3286-300. PMID 20711167 DOI: 10.1038/emboj.2010.195  0.52
2010 Shen S, Warzecha CC, Carstens RP, Xing Y. MADS+: discovery of differential splicing events from Affymetrix exon junction array data. Bioinformatics (Oxford, England). 26: 268-9. PMID 19933160 DOI: 10.1093/bioinformatics/btp643  1
2009 Warzecha CC, Shen S, Xing Y, Carstens RP. The epithelial splicing factors ESRP1 and ESRP2 positively and negatively regulate diverse types of alternative splicing events. Rna Biology. 6: 546-62. PMID 19829082  1
2009 Nabet B, Tsai A, Tobias JW, Carstens RP. Identification of a putative network of actin-associated cytoskeletal proteins in glomerular podocytes defined by co-purified mRNAs. Plos One. 4: e6491. PMID 19652713 DOI: 10.1371/journal.pone.0006491  0.52
2009 Warzecha CC, Sato TK, Nabet B, Hogenesch JB, Carstens RP. ESRP1 and ESRP2 are epithelial cell-type-specific regulators of FGFR2 splicing. Molecular Cell. 33: 591-601. PMID 19285943 DOI: 10.1016/j.molcel.2009.01.025  0.52
2007 Hovhannisyan RH, Carstens RP. Heterogeneous ribonucleoprotein m is a splicing regulatory protein that can enhance or silence splicing of alternatively spliced exons. The Journal of Biological Chemistry. 282: 36265-74. PMID 17959601 DOI: 10.1074/jbc.M704188200  0.6
2007 Ji X, Kong J, Carstens RP, Liebhaber SA. The 3' untranslated region complex involved in stabilization of human alpha-globin mRNA assembles in the nucleus and serves an independent role as a splice enhancer. Molecular and Cellular Biology. 27: 3290-302. PMID 17325043 DOI: 10.1128/MCB.02289-05  0.52
2006 Tsai A, Carstens RP. An optimized protocol for protein purification in cultured mammalian cells using a tandem affinity purification approach. Nature Protocols. 1: 2820-7. PMID 17406540 DOI: 10.1038/nprot.2006.371  0.52
2006 Newman EA, Muh SJ, Hovhannisyan RH, Warzecha CC, Jones RB, McKeehan WL, Carstens RP. Identification of RNA-binding proteins that regulate FGFR2 splicing through the use of sensitive and specific dual color fluorescence minigene assays. Rna (New York, N.Y.). 12: 1129-41. PMID 16603716 DOI: 10.1261/rna.34906  0.52
2006 Geng J, Carstens RP. Two methods for improved purification of full-length mammalian proteins that have poor expression and/or solubility using standard Escherichia coli procedures. Protein Expression and Purification. 48: 142-50. PMID 16529945 DOI: 10.1016/j.pep.2006.01.021  0.52
2006 Hovhannisyan RH, Warzecha CC, Carstens RP. Characterization of sequences and mechanisms through which ISE/ISS-3 regulates FGFR2 splicing. Nucleic Acids Research. 34: 373-85. PMID 16410617 DOI: 10.1093/nar/gkj407  1
2005 Hovhannisyan RH, Carstens RP. A novel intronic cis element, ISE/ISS-3, regulates rat fibroblast growth factor receptor 2 splicing through activation of an upstream exon and repression of a downstream exon containing a noncanonical branch point sequence. Molecular and Cellular Biology. 25: 250-63. PMID 15601847 DOI: 10.1128/MCB.25.1.250-263.2005  0.6
2002 Muh SJ, Hovhannisyan RH, Carstens RP. A Non-sequence-specific double-stranded RNA structural element regulates splicing of two mutually exclusive exons of fibroblast growth factor receptor 2 (FGFR2). The Journal of Biological Chemistry. 277: 50143-54. PMID 12393912 DOI: 10.1074/jbc.M207409200  0.6
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