Malini Raghavan - Related publications

Affiliations: 
University of Michigan, Ann Arbor, Ann Arbor, MI 
Area:
Immunology, Cell Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Margulies DH, Jiang J, Natarajan K. Structural and dynamic studies of TAPBPR and Tapasin reveal the mechanism of peptide loading of MHC-I molecules. Current Opinion in Immunology. 64: 71-79. PMID 32402827 DOI: 10.1016/j.coi.2020.04.004   
2020 Shastry DG, Irudayanathan FJ, Williams A, Koffas M, Linhardt RJ, Nangia S, Karande P. Rational identification and characterisation of peptide ligands for targeting polysialic acid. Scientific Reports. 10: 7697. PMID 32376914 DOI: 10.1038/s41598-020-64088-z   
2020 Anananuchatkul T, Chang IV, Miki T, Tsutsumi H, Mihara H. Construction of a Stapled α-Helix Peptide Library Displayed on Phage for the Screening of Galectin-3-Binding Peptide Ligands. Acs Omega. 5: 5666-5674. PMID 32226843 DOI: 10.1021/acsomega.9b03461   
2020 Harrison RES, Zewde NT, Narkhede YB, Hsu RV, Morikis D, Vullev VI, Palermo G. Factor H-Inspired Design of Peptide Biomarkers of the Complement C3d Protein. Acs Medicinal Chemistry Letters. 11: 1054-1059. PMID 32435425 DOI: 10.1021/acsmedchemlett.9b00663   
2020 Mishra A, Bansal R, Sreenivasan S, Dash R, Joshi S, Singh R, Rathore AS, Goel G. Structure-based Design of Small Peptide Ligands to Inhibit Early Stage Protein Aggregation Nucleation. Journal of Chemical Information and Modeling. PMID 32323986 DOI: 10.1021/acs.jcim.0c00226   
2020 Han Y, Král P. Computational Design of ACE2-Based Peptide Inhibitors of SARS-CoV-2. Acs Nano. PMID 32286790 DOI: 10.1021/acsnano.0c02857   
2020 Liu KC, Röder K, Mayer C, Adhikari S, Wales DJ, Balasubramanian S. Affinity-selected bicyclic peptide G-quadruplex ligands mimic a protein-like binding mechanism. Journal of the American Chemical Society. PMID 32267689 DOI: 10.1021/jacs.0c01879   
2020 Zhao D, Lu K, Liu G, Zhu H, Ma L, Qi J, Yuan L. Design of BRC analogous peptides based on the complex BRC8-RAD51 and the preliminary study on the peptide structures. Amino Acids. PMID 32417964 DOI: 10.1007/s00726-020-02856-x   
2020 Yang J, Zhang H, Gong W, Liu Z, Wu H, Hu W, Chen X, Wang L, Wu S, Chen C, Perrett S. -Glutathionylation of human inducible Hsp70 reveals a regulatory mechanism involving the C-terminal α-helical lid. The Journal of Biological Chemistry. PMID 32332101 DOI: 10.1074/jbc.RA119.012372   
2020 Nonga OE, Lavogina D, Ivan T, Viht K, Enkvist E, Uri A. Discovery of strong inhibitory properties of a monoclonal antibody of PKA and use of the antibody and a competitive photoluminescent orthosteric probe for analysis of the protein kinase. Biochimica Et Biophysica Acta. Proteins and Proteomics. 1868: 140427. PMID 32283249 DOI: 10.1016/j.bbapap.2020.140427   
2020 Im H, Ham S. Effect of linker on the binding free energy of stapled p53/HDM2 complex. Plos One. 15: e0232613. PMID 32353067 DOI: 10.1371/journal.pone.0232613   
2020 Yamazaki R, Furukawa A, Hirayasu K, Yumoto K, Fukuhara H, Arase H, Maenaka K. Molecular mechanism of the recognition of bacterially cleaved immunoglobulin by the immune regulatory receptor LILRA2. The Journal of Biological Chemistry. PMID 32424043 DOI: 10.1074/jbc.RA120.013354   
2020 Wolter M, Santo DL, Herman P, Ballone A, Centorrino F, Obsil T, Ottmann C. Interaction of an IκBα Peptide with 14-3-3. Acs Omega. 5: 5380-5388. PMID 32201828 DOI: 10.1021/acsomega.9b04413   
2020 Hetherington K, Hegedus Z, Edwards TA, Sessions R, Nelson A, Wilson AJ. Stapled Peptides as HIF-1α/p300 Inhibitors: Helicity Enhancement in the Bound State Increases Inhibitory Potency. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 32307728 DOI: 10.1002/chem.202000417   
2020 Kawahara K, Yoshida T, Maruno T, Oki H, Ohkubo T, Koide T, Kobayashi Y. Spatiotemporal regulation of PEDF signaling by type I collagen remodeling. Proceedings of the National Academy of Sciences of the United States of America. 117: 11450-11458. PMID 32385162 DOI: 10.1073/pnas.2004034117   
2020 Johansson E, Nielsen AD, Demuth H, Wiberg C, Schjødt CB, Huang T, Chen J, Jensen S, Petersen J, Thygesen P. Identification of Binding Sites on Human Serum Albumin for Somapacitan, a Long-Acting Growth Hormone Derivative. Biochemistry. PMID 32208682 DOI: 10.1021/acs.biochem.0c00019   
2020 Roig-Molina E, Sánchez-Angulo M, Seele J, García-Asencio F, Nau R, Sanz JM, Maestro B. Searching for Antipneumococcal Targets: Choline-Binding Modules as Phagocytosis Enhancers. Acs Infectious Diseases. PMID 32135064 DOI: 10.1021/acsinfecdis.9b00344   
2020 Khowsathit J, Bazzoli A, Cheng H, Karanicolas J. Computational Design of an Allosteric Antibody Switch by Deletion and Rescue of a Complex Structural Constellation. Acs Central Science. 6: 390-403. PMID 32232139 DOI: 10.1021/acscentsci.9b01065   
2020 Mende M, Tsouka A, Heidepriem J, Paris G, Mattes DS, Eickelmann S, Bordoni V, Wawrzinek R, Fuchsberger FF, Seeberger PH, Rademacher C, Delbianco M, Mallagaray A, Loeffler FF. On-Chip Neo-Glycopeptide Synthesis for Multivalent Glycan Presentation. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 32315099 DOI: 10.1002/chem.202001291   
2020 van Faassen H, Ryan S, Henry KA, Raphael S, Yang Q, Rossotti MA, Brunette E, Jiang S, Haqqani AS, Sulea T, MacKenzie CR, Tanha J, Hussack G. Serum albumin-binding V Hs with variable pH sensitivities enable tailored half-life extension of biologics. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. PMID 32342547 DOI: 10.1096/fj.201903231R   
2020 Li Z, Zhang N, Ma L, Zhang L, Meng G, Xia C. The Mechanism of β2m Molecule-Induced Changes in the Peptide Presentation Profile in a Bony Fish. Iscience. 23: 101119. PMID 32438322 DOI: 10.1016/j.isci.2020.101119   
2020 Li XP, Harijan RK, Kahn JN, Schramm VL, Tumer NE. Small molecule inhibitors targeting the interaction of ricin toxin A subunit with ribosomes. Acs Infectious Diseases. PMID 32428396 DOI: 10.1021/acsinfecdis.0c00127   
2020 Kim H, Kubori T, Yamazaki K, Kwak MJ, Park SY, Nagai H, Vogel JP, Oh BH. Structural basis for effector protein recognition by the Dot/Icm Type IVB coupling protein complex. Nature Communications. 11: 2623. PMID 32457311 DOI: 10.1038/s41467-020-16397-0   
2020 Miller A, Carr S, Rabbitts T, Ali H. Multimeric antibodies with increased valency surpassing functional affinity and potency thresholds using novel formats. Mabs. 12: 1752529. PMID 32316838 DOI: 10.1080/19420862.2020.1752529   
2020 Wang DY, Kamuda K, Montoya G, Mesa P. The TRiC/CCT Chaperonin and Its Role in Uncontrolled Proliferation. Advances in Experimental Medicine and Biology. 1243: 21-40. PMID 32297209 DOI: 10.1007/978-3-030-40204-4_2   
2020 Oliva R, Banerjee S, Cinar H, Ehrt C, Winter R. Alteration of Protein Binding Affinities by Aqueous Two-Phase Systems Revealed by Pressure Perturbation. Scientific Reports. 10: 8074. PMID 32415277 DOI: 10.1038/s41598-020-65053-6   
2020 Padariya M, Kalathiya U, Houston DR, Alfaro JA. Recognition Dynamics of Cancer Mutations on the ERp57-Tapasin Interface. Cancers. 12. PMID 32244998 DOI: 10.3390/cancers12030737   
2020 Ontoria JM, Biancofiore I, Fezzardi P, Ferrigno F, Torrente E, Colarusso S, Bianchi E, Andreini M, Patsilinakos A, Kempf G, Augustin M, Steinbacher S, Summa V, Pacifici R, Muñoz-Sanjuan I, et al. Combined Peptide and Small-Molecule Approach toward Nonacidic THIQ Inhibitors of the KEAP1/NRF2 Interaction. Acs Medicinal Chemistry Letters. 11: 740-746. PMID 32435379 DOI: 10.1021/acsmedchemlett.9b00594   
2020 Berk JM, Lim C, Ronau JA, Chaudhuri A, Chen H, Beckmann JF, Loria JP, Xiong Y, Hochstrasser M. A deubiquitylase with an unusually high-affinity ubiquitin-binding domain from the scrub typhus pathogen Orientia tsutsugamushi. Nature Communications. 11: 2343. PMID 32393759 DOI: 10.1038/s41467-020-15985-4   
2020 Xiao D, Fan Z, Jiaqi W, Liu H, Shen L, He B, Zhang M. Rational molecular targeting of the inter-subunit interaction between human cardiac troponin hcTnC and hcTnI using switch peptide-competitive biogenic medicines. Computational Biology and Chemistry. 87: 107272. PMID 32438115 DOI: 10.1016/j.compbiolchem.2020.107272   
2020 Puhl AC, Bogart JW, Haberman VA, Larson JE, Godoy AS, Norris-Drouin JL, Cholensky SH, Leisner TM, Frye SV, Parise LV, Bowers AA, Pearce KH. Discovery and Characterization of Peptide Inhibitors for CIB1. Acs Chemical Biology. PMID 32383857 DOI: 10.1021/acschembio.0c00144   
2020 Huang P, Wu S, Yang S, Yan Q, Jiang Z. Structural basis of carbohydrate binding in domain C of a type I pullulanase from Paenibacillus barengoltzii. Acta Crystallographica. Section D, Structural Biology. 76: 447-457. PMID 32355041 DOI: 10.1107/S205979832000409X   
2020 Yu J, Horsley JR, Abell AD. Unravelling electron transfer in peptide-cation complexes: a model for mimicking redox centres in proteins. Physical Chemistry Chemical Physics : Pccp. PMID 32270834 DOI: 10.1039/d0cp00635a   
2020 Baxter M, Chapagai D, Craig S, Hurtado C, Varghese J, Nurmemmedov E, Wyatt MD, McInnes C. Peptidomimetic Polo-Box targeted inhibitors that engage PLK1 in tumor cells and are selective against the PLK3 tumor suppressor. Chemmedchem. PMID 32232973 DOI: 10.1002/cmdc.202000137   
2020 Das D, Mitra S, Kumar R, Banerjee S, Koti Ainavarapu SR. Copper-induced spectroscopic and structural changes in short peptides derived from azurin. Archives of Biochemistry and Biophysics. 108388. PMID 32343975 DOI: 10.1016/j.abb.2020.108388   
2020 Wang J, Chen T, Han M, Qian L, Li J, Wu M, Han T, Cao J, Nagalakshmi U, Rathjen JP, Hong Y, Liu Y. Plant NLR immune receptor Tm-22 activation requires NB-ARC domain-mediated self-association of CC domain. Plos Pathogens. 16: e1008475. PMID 32339200 DOI: 10.1371/journal.ppat.1008475   
2020 Wei CC, Hay E, Smith D, Lloyd L, Acharya G, Ngo R. Binding of Nox5's EF-Hand domain to the peptides corresponding to the phosphorylatable region and regulatory inhibitory loop in its dehydrogenase domain. Biophysical Chemistry. 262: 106379. PMID 32339785 DOI: 10.1016/j.bpc.2020.106379   
2020 Sun X, Lai L. Protein fibrils formed by rationally designed α-helical peptides. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 32419459 DOI: 10.1021/acs.langmuir.0c00370   
2020 Moesgaard L, Reinholdt P, Wüstner D, Kongsted J. Modeling the sterol-binding domain of Aster-A provides insight into its multi-ligand specificity. Journal of Chemical Information and Modeling. PMID 32233488 DOI: 10.1021/acs.jcim.0c00086   
2020 Tan YZ, Zhang L, Rodrigues J, Zheng RB, Giacometti SI, Rosário AL, Kloss B, Dandey VP, Wei H, Brunton R, Raczkowski AM, Athayde D, Catalão MJ, Pimentel M, Clarke OB, et al. Cryo-EM Structures and Regulation of Arabinofuranosyltransferase AftD from Mycobacteria. Molecular Cell. PMID 32386575 DOI: 10.1016/j.molcel.2020.04.014   
2020 Yanaka S, Yogo R, Kato K. Biophysical characterization of dynamic structures of immunoglobulin G. Biophysical Reviews. PMID 32410186 DOI: 10.1007/s12551-020-00698-1   
2020 Yu R, Li J, Lin Z, Ouyang Z, Huang X, Reglodi D, Vaudry D. TAT-tagging of VIP exerts positive allosteric modulation of the PAC1 receptor and enhances VIP neuroprotective effect in the MPTP mouse model of Parkinson's disease. Biochimica Et Biophysica Acta. General Subjects. 129626. PMID 32335135 DOI: 10.1016/j.bbagen.2020.129626   
2020 Reslan M, Sifniotis V, Cruz E, Sumer-Bayraktar Z, Cordwell S, Kayser V. Enhancing the stability of adalimumab by engineering additional glycosylation motifs. International Journal of Biological Macromolecules. PMID 32360204 DOI: 10.1016/j.ijbiomac.2020.04.147   
2020 Liu B, Zhang Z, Lu S, He Q, Deng N, Meng H, Pan C, Li H, Liu M, Huang A, Shen F. In-silico analysis of ligand-receptor binding patterns of α-MMC, TCS and MAP30 protein to LRP1 receptor. Journal of Molecular Graphics & Modelling. 98: 107619. PMID 32311663 DOI: 10.1016/j.jmgm.2020.107619   
2020 Yamakawa N, Yasuda Y, Yoshimura A, Goshima A, Crocker PR, Vergoten G, Nishiura Y, Takahashi T, Hanashima S, Matsumoto K, Yamaguchi Y, Tanaka H, Kitajima K, Sato C. Discovery of a new sialic acid binding region that regulates Siglec-7. Scientific Reports. 10: 8647. PMID 32457377 DOI: 10.1038/s41598-020-64887-4   
2020 Said AM, Parker MW, Vander Kooi CW. Design, synthesis, and evaluation of a novel benzamidine-based inhibitor of VEGF-C binding to Neuropilin-2. Bioorganic Chemistry. 100: 103856. PMID 32344185 DOI: 10.1016/j.bioorg.2020.103856   
2020 Calabrese AN, Schiffrin B, Watson M, Karamanos TK, Walko M, Humes JR, Horne JE, White P, Wilson AJ, Kalli AC, Tuma R, Ashcroft AE, Brockwell DJ, Radford SE. Inter-domain dynamics in the chaperone SurA and multi-site binding to its outer membrane protein clients. Nature Communications. 11: 2155. PMID 32358557 DOI: 10.1038/s41467-020-15702-1   
2020 Yin H, Huang YH, Deprey K, Condon ND, Kritzer JA, Craik DJ, Wang CK. Cellular Uptake and Cytosolic Delivery of a Cyclic Cystine Knot Scaffold. Acs Chemical Biology. PMID 32315152 DOI: 10.1021/acschembio.0c00297   
2020 Gleason PR, Kelly PI, Grisingher DW, Mills JH. An intrinsic FRET sensor of protein-ligand interactions. Organic & Biomolecular Chemistry. PMID 32427252 DOI: 10.1039/d0ob00793e   
2020 Li DW, Xie M, Bruschweiler R. Quantitative cooperative binding model for intrinsically disordered proteins interacting with nanomaterials. Journal of the American Chemical Society. PMID 32426975 DOI: 10.1021/jacs.0c01885