R E. Pearlman - Publications

York University, Toronto, Ontario, Canada 
Molecular Biology

46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Nabeel-Shah S, Ashraf K, Saettone A, Garg J, Derynck J, Lambert JP, Pearlman RE, Fillingham J. Nucleus-specific linker histones Hho1 and Mlh1 form distinct protein interactions during growth, starvation and development in Tetrahymena thermophila. Scientific Reports. 10: 168. PMID 31932604 DOI: 10.1038/s41598-019-56867-0  0.44
2019 Saettone A, Nabeel-Shah S, Garg J, Lambert JP, Pearlman RE, Fillingham J. Functional Proteomics of Nuclear Proteins in A Review. Genes. 10. PMID 31052454 DOI: 10.3390/genes10050333  0.44
2019 Ashraf K, Nabeel-Shah S, Garg J, Saettone A, Derynck J, Gingras AC, Lambert JP, Pearlman RE, Fillingham J. Proteomic analysis of histones H2A/H2B and variant Hv1 in Tetrahymena thermophila reveals an ancient network of chaperones. Molecular Biology and Evolution. PMID 30796450 DOI: 10.1093/Molbev/Msz039  0.44
2018 Saettone A, Garg J, Lambert JP, Nabeel-Shah S, Ponce M, Burtch A, Thuppu Mudalige C, Gingras AC, Pearlman RE, Fillingham J. The bromodomain-containing protein Ibd1 links multiple chromatin-related protein complexes to highly expressed genes in Tetrahymena thermophila. Epigenetics & Chromatin. 11: 10. PMID 29523178 DOI: 10.1186/S13072-018-0180-6  0.44
2017 Akematsu T, Fukuda Y, Garg J, Fillingham JS, Pearlman RE, Loidl J. Post-meiotic DNA double-strand breaks occur in Tetrahymena, and require Topoisomerase II and Spo11. Elife. 6. PMID 28621664 DOI: 10.7554/eLife.26176  0.72
2015 Fukuda Y, Akematsu T, Attiq R, Tada C, Nakai Y, Pearlman RE. Role of the Cytosolic Heat Shock Protein 70 Ssa5 in the Ciliate Protozoan Tetrahymena thermophila. The Journal of Eukaryotic Microbiology. 62: 481-93. PMID 25586926 DOI: 10.1111/jeu.12203  0.36
2013 Garg J, Lambert JP, Karsou A, Marquez S, Nabeel-Shah S, Bertucci V, Retnasothie DV, Radovani E, Pawson T, Gingras AC, Pearlman RE, Fillingham JS. Conserved Asf1-importin β physical interaction in growth and sexual development in the ciliate Tetrahymena thermophila. Journal of Proteomics. 94: 311-26. PMID 24120531 DOI: 10.1016/J.Jprot.2013.09.018  0.36
2011 Xiong J, Yuan D, Fillingham JS, Garg J, Lu X, Chang Y, Liu Y, Fu C, Pearlman RE, Miao W. Gene network landscape of the ciliate Tetrahymena thermophila. Plos One. 6: e20124. PMID 21637855 DOI: 10.1371/Journal.Pone.0020124  0.36
2010 Noto T, Kurth HM, Kataoka K, Aronica L, DeSouza LV, Siu KWM, Pearlman RE, Gorovsky MA, Mochizuki K. The Tetrahymena Argonaute-Binding Protein Giw1p Directs a Mature Argonaute-siRNA Complex to the Nucleus Cell. 140: 692-703. PMID 20211138 DOI: 10.1016/J.Cell.2010.02.010  0.36
2009 Bednenko J, Noto T, DeSouza LV, Siu KWM, Pearlman RE, Mochizuki K, Gorovsky MA. Two GW repeat proteins interact with Tetrahymena thermophila argonaute and promote genome rearrangement Molecular and Cellular Biology. 29: 5020-5030. PMID 19596782 DOI: 10.1128/Mcb.00076-09  0.36
2009 Miao W, Xiong J, Bowen J, Wang W, Liu Y, Braguinets O, Grigull J, Pearlman RE, Orias E, Gorovsky MA. Microarray analyses of gene expression during the Tetrahymena thermophila life cycle. Plos One. 4: e4429. PMID 19204800 DOI: 10.1371/Journal.Pone.0004429  0.36
2008 Coyne RS, Thiagarajan M, Jones KM, Wortman JR, Tallon LJ, Haas BJ, Cassidy-Hanley DM, Wiley EA, Smith JJ, Collins K, Lee SR, Couvillion MT, Liu Y, Garg J, Pearlman RE, et al. Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure. Bmc Genomics. 9: 562. PMID 19036158 DOI: 10.1186/1471-2164-9-562  0.36
2008 Aronica L, Bednenko J, Noto T, DeSouza LV, Siu KWM, Loidl J, Pearlman RE, Gorovsky MA, Mochizuki K. Study of an RNA helicase implicates small RNA-noncoding RNA interactions in programmed DNA elimination in Tetrahymena Genes and Development. 22: 2228-2241. PMID 18708581 DOI: 10.1101/Gad.481908  0.36
2007 Smith DG, Gawryluk RM, Spencer DF, Pearlman RE, Siu KW, Gray MW. Exploring the mitochondrial proteome of the ciliate protozoon Tetrahymena thermophila: direct analysis by tandem mass spectrometry. Journal of Molecular Biology. 374: 837-63. PMID 17959197 DOI: 10.1016/J.Jmb.2007.09.051  0.36
2006 Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, ... ... Pearlman RE, et al. Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote. Plos Biology. 4: e286. PMID 16933976 DOI: 10.1371/Journal.Pbio.0040286  0.36
2006 Fillingham JS, Garg J, Tsao N, Vythilingum N, Nishikawa T, Pearlman RE. Molecular genetic analysis of an SNF2/brahma-related gene in Tetrahymena thermophila suggests roles in growth and nuclear development. Eukaryotic Cell. 5: 1347-59. PMID 16896218 DOI: 10.1128/EC.00149-06  0.72
2005 Keeling PJ, Burger G, Durnford DG, Lang BF, Lee RW, Pearlman RE, Roger AJ, Gray MW. The tree of eukaryotes. Trends in Ecology & Evolution. 20: 670-6. PMID 16701456 DOI: 10.1016/J.Tree.2005.09.005  0.36
2005 Bowman GR, Smith DG, Michael Siu KW, Pearlman RE, Turkewitz AP. Genomic and proteomic evidence for a second family of dense core granule cargo proteins in Tetrahymena thermophila. The Journal of Eukaryotic Microbiology. 52: 291-7. PMID 16014006 DOI: 10.1111/J.1550-7408.2005.00045.X  0.36
2005 Tyers M, Brown E, Andrews DW, Bergeron JJ, Boone C, Bremner R, Bussey HA, Cross JC, Davies JE, Desjardins M, Dick JE, Dumont DJ, Durocher D, Ellison MJ, Golding GB, ... ... Pearlman RE, et al. Problems with co-funding in Canada. Science (New York, N.Y.). 308: 1867. PMID 15976286 DOI: 10.1126/Science.308.5730.1867B  0.48
2005 Smith JC, Northey JG, Garg J, Pearlman RE, Siu KW. Robust method for proteome analysis by MS/MS using an entire translated genome: demonstration on the ciliome of Tetrahymena thermophila. Journal of Proteome Research. 4: 909-19. PMID 15952738 DOI: 10.1021/pr050013h  0.44
2004 Fillingham JS, Pearlman RE. Role of micronucleus-limited DNA in programmed deletion of mse2.9 during macronuclear development of Tetrahymena thermophila. Eukaryotic Cell. 3: 288-301. PMID 15075259  0.72
2004 Fillingham JS, Thing TA, Vythilingum N, Keuroghlian A, Bruno D, Golding GB, Pearlman RE. A non-long terminal repeat retrotransposon family is restricted to the germ line micronucleus of the ciliated protozoan Tetrahymena thermophila. Eukaryotic Cell. 3: 157-69. PMID 14871946  0.72
2002 Sperling L, Dessen P, Zagulski M, Pearlman RE, Migdalski A, Gromadka R, Froissard M, Keller AM, Cohen J. Random sequencing of Paramecium somatic DNA. Eukaryotic Cell. 1: 341-52. PMID 12455983 DOI: 10.1128/EC.1.3.341-352.2002  0.36
2002 Fillingham JS, Chilcoat ND, Turkewitz AP, Orias E, Reith M, Pearlman RE. Analysis of expressed sequence tags (ESTs) in the ciliated protozoan Tetrahymena thermophila. The Journal of Eukaryotic Microbiology. 49: 99-107. PMID 12043965 DOI: 10.1111/J.1550-7408.2002.Tb00350.X  0.36
2001 Dessen P, Zagulski M, Gromadka R, Plattner H, Kissmehl R, Meyer E, Bétermier M, Schultz JE, Linder JU, Pearlman RE, Kung C, Forney J, Satir BH, Van Houten JL, Keller AM, et al. Paramecium genome survey: a pilot project. Trends in Genetics : Tig. 17: 306-8. PMID 11377780 DOI: 10.1016/S0168-9525(01)02307-1  0.36
2001 Botelho RJ, DiNicolo L, Tsao N, Karaiskakis A, Tarsounas M, Moens PB, Pearlman RE. The genomic structure of SYCP3, a meiosis-specific gene encoding a protein of the chromosome core. Biochimica Et Biophysica Acta. 1518: 294-9. PMID 11311943 DOI: 10.1016/S0167-4781(01)00171-3  0.44
2001 Fillingham JS, Bruno D, Pearlman RE. Cis-acting requirements in flanking DNA for the programmed elimination of mse2.9: a common mechanism for deletion of internal eliminated sequences from the developing macronucleus of Tetrahymena thermophila. Nucleic Acids Research. 29: 488-98. PMID 11139619  0.36
2000 McNeil JB, Flynn J, Tsao N, Monschau N, Stahmann K, Haynes RH, McIntosh EM, Pearlman RE. Glycine metabolism in Candida albicans: characterization of the serine hydroxymethyltransferase (SHM1, SHM2) and threonine aldolase (GLY1) genes. Yeast (Chichester, England). 16: 167-75. PMID 10641038 DOI: 10.1002/(SICI)1097-0061(20000130)16:2<167::AID-YEA519>3.0.CO;2-1  0.36
1998 Tourancheau AB, Villalobo E, Tsao N, Torres A, Pearlman RE. Protein coding gene trees in ciliates: comparison with rRNA-based phylogenies. Molecular Phylogenetics and Evolution. 10: 299-309. PMID 10051383 DOI: 10.1006/mpev.1998.0534  0.44
1997 Tarsounas M, Pearlman RE, Gasser PJ, Park MS, Moens PB. Protein-protein interactions in the synaptonemal complex. Molecular Biology of the Cell. 8: 1405-14. PMID 9285814 DOI: 10.1091/Mbc.8.8.1405  0.36
1997 Cohen D, Heng HH, Shi XM, McIntosh EM, Tsui LC, Pearlman RE. Assignment of the human dUTPase gene (DUT) to chromosome 15q15-q21. 1 by fluorescence in situ hybridization. Genomics. 40: 213-5. PMID 9070952 DOI: 10.1006/geno.1996.4540  0.36
1995 Golding GB, Tsao N, Pearlman RE. Evidence for intron capture: an unusual path for the evolution of proteins. Proceedings of the National Academy of Sciences of the United States of America. 92: 646. PMID 7831343  0.48
1995 Tourancheau AB, Tsao N, Klobutcher LA, Pearlman RE, Adoutte A. Genetic code deviations in the ciliates: evidence for multiple and independent events. The Embo Journal. 14: 3262-7. PMID 7621837  0.44
1994 Golding GB, Tsao N, Pearlman RE. Evidence for intron capture: an unusual path for the evolution of proteins. Proceedings of the National Academy of Sciences of the United States of America. 91: 7506-9. PMID 8052610  0.48
1994 Dobson MJ, Pearlman RE, Karaiskakis A, Spyropoulos B, Moens PB. Synaptonemal complex proteins: Occurrence, epitope mapping and chromosome disjunction Journal of Cell Science. 107: 2749-2760. PMID 7876343  0.36
1994 McIntosh EM, Looser J, Haynes RH, Pearlman RE. MluI site-dependent transcriptional regulation of the Candida albicans dUTPase gene. Current Genetics. 26: 415-21. PMID 7874734 DOI: 10.1007/BF00309928  0.36
1992 Vohra GB, Golding GB, Tsao N, Pearlman RE. A phylogenetic analysis based on the gene encoding phosphoglycerate kinase. Journal of Molecular Evolution. 34: 383-95. PMID 1602492  0.48
1992 Pearlman RE, Tsao N, Moens PB. Synaptonemal complexes from DNase-treated rat pachytene chromosomes contain (GT)n and LINE/SINE sequences. Genetics. 130: 865-72. PMID 1582563  0.44
1992 Vohra GB, Golding GB, Tsao N, Pearlman RE. A phylogenetic analysis based on the gene encoding phosphoglycerate kinase. Journal of Molecular Evolution. 35: 466. PMID 1487830  0.48
1986 Roeder GS, Coney LR, Pearlman RE, Rose AB. Control of yeast gene expression by transposable elements. Basic Life Sciences. 40: 545-55. PMID 3032147 DOI: 10.1007/978-1-4684-5251-8_42  0.36
1986 Cupples CG, Pearlman RE. Isolation and characterization of the actin gene from Tetrahymena thermophila Proceedings of the National Academy of Sciences of the United States of America. 83: 5160-5164.  0.36
1985 Roeder GS, Rose AB, Pearlman RE. Transposable element sequences involved in the enhancement of yeast gene expression. Proceedings of the National Academy of Sciences of the United States of America. 82: 5428-32. PMID 2991923 DOI: 10.1073/Pnas.82.16.5428  0.36
1982 Brunk CF, Tsao SG, Diamond CH, Ohashi PS, Tsao NN, Pearlman RE. Reorganization of unique and repetitive sequences during nuclear development in Tetrahymena thermophila. Canadian Journal of Biochemistry. 60: 847-53. PMID 7172094  0.36
1977 Salamone MF, Pearlman RE. Sizes of G1 and G2 populations in starved Tetrahymena Experimental Cell Research. 110: 323-330. PMID 412683 DOI: 10.1016/0014-4827(77)90298-1  0.36
1972 Kurtz S, Pearlman RE. DNA-dependent RNA polymerase from Tetrahymena pyriformis Canadian Journal of Biochemistry. 50: 154-157. PMID 4622563  0.36
1963 PEARLMAN R, BLOCH K. N-ACETYLAMINO ACIDS AND PROTEIN SYNTHESIS Proceedings of the National Academy of Sciences of the United States Of. 50: 533-537. PMID 14067101 DOI: 10.1073/pnas.50.3.533  0.36
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