Phillip McClean - Publications

Affiliations: 
North Dakota State University, Fargo, ND, United States 
Area:
Molecular Biology

57 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Moghaddam SM, Oladzad A, Koh C, Ramsay L, Hart JP, Mamidi S, Hoopes G, Sreedasyam A, Wiersma A, Zhao D, Grimwood J, Hamilton JP, Jenkins J, Vaillancourt B, Wood JC, ... ... McClean PE, et al. The tepary bean genome provides insight into evolution and domestication under heat stress. Nature Communications. 12: 2638. PMID 33976152 DOI: 10.1038/s41467-021-22858-x  0.64
2021 Soler-Garzón A, Oladzad A, Beaver J, Beebe S, Lee R, Lobaton JD, Macea E, McClean P, Raatz B, Rosas JC, Song Q, Miklas PN. NAC Candidate Gene Marker for and Interaction With QTL for Resistance to in Common Bean. Frontiers in Plant Science. 12: 628443. PMID 33841459 DOI: 10.3389/fpls.2021.628443  0.44
2021 Simons KJ, Oladzad A, Lamppa R, Maniruzzaman, McClean PE, Osorno JM, Pasche JS. Using Breeding Populations With a Dual Purpose: Cultivar Development and Gene Mapping-A Case Study Using Resistance to Common Bacterial Blight in Dry Bean ( L.). Frontiers in Plant Science. 12: 621097. PMID 33719292 DOI: 10.3389/fpls.2021.621097  0.36
2021 Restrepo-Montoya D, McClean PE, Osorno JM. Orthology and synteny analysis of receptor-like kinases "RLK" and receptor-like proteins "RLP" in legumes. Bmc Genomics. 22: 113. PMID 33568053 DOI: 10.1186/s12864-021-07384-w  0.36
2021 Soltani A, Walter KA, Wiersma AT, Santiago JP, Quiqley M, Chitwood D, Porch TG, Miklas P, McClean PE, Osorno JM, Lowry DB. The genetics and physiology of seed dormancy, a crucial trait in common bean domestication. Bmc Plant Biology. 21: 58. PMID 33482732 DOI: 10.1186/s12870-021-02837-6  0.44
2020 Zitnick-Anderson K, Oladzadabbasabadi A, Jain S, Modderman C, Osorno JM, McClean PE, Pasche JS. Sources of Resistance to and Associated Genomic Regions in Common Bean Diversity Panels. Frontiers in Genetics. 11: 475. PMID 32612633 DOI: 10.3389/Fgene.2020.00475  0.36
2020 MacQueen AH, White JW, Lee R, Osorno JM, Schmutz J, Miklas PN, Myers J, McClean PE, Juenger TE. Genetic Associations in Four Decades of Multi-environment Trials Reveal Agronomic Trait Evolution in Common Bean. Genetics. PMID 32205398 DOI: 10.1534/Genetics.120.303038  0.44
2019 Myers JR, Wallace LT, Mafi Moghaddam S, Kleintop AE, Echeverria D, Thompson HJ, Brick MA, Lee R, McClean PE. Improving the Health Benefits of Snap Bean: Genome-Wide Association Studies of Total Phenolic Content. Nutrients. 11. PMID 31635241 DOI: 10.3390/nu11102509  0.44
2019 Oladzad A, Zitnick-Anderson K, Jain S, Simons K, Osorno JM, McClean PE, Pasche JS. Genotypes and Genomic Regions Associated With Resistance in Common Bean. Frontiers in Plant Science. 10: 956. PMID 31396253 DOI: 10.3389/Fpls.2019.00956  0.36
2019 Oladzad A, Porch T, Rosas JC, Moghaddam SM, Beaver J, Beebe SE, Burridge J, Jochua CN, Miguel MA, Miklas PN, Ratz B, White JW, Lynch J, McClean PE. Single and Multi-trait GWAS Identify Genetic Factors Associated with Production Traits in Common Bean Under Abiotic Stress Environments. G3 (Bethesda, Md.). 9: 1881-1892. PMID 31167806 DOI: 10.1534/G3.119.400072  0.44
2019 Arifuzzaman M, Oladzadabbasabadi A, McClean P, Rahman M. Shovelomics for phenotyping root architectural traits of rapeseed/canola (Brassica napus L.) and genome-wide association mapping. Molecular Genetics and Genomics : Mgg. PMID 30968249 DOI: 10.1007/S00438-019-01563-X  0.4
2019 Jain S, Poromarto S, Osorno JM, McClean PE, Nelson BD. Genome wide association study discovers genomic regions involved in resistance to soybean cyst nematode (Heterodera glycines) in common bean. Plos One. 14: e0212140. PMID 30730982 DOI: 10.1371/Journal.Pone.0212140  0.36
2018 Goff EE, Reindl KM, Johnson C, McClean P, Offerdahl EG, Schroeder NL, White AR. Investigation of a Stand-Alone Online Learning Module for Cellular Respiration Instruction. Journal of Microbiology & Biology Education. 19. PMID 29983851 DOI: 10.1128/Jmbe.V19I2.1460  0.36
2018 Soltani A, MafiMoghaddam S, Oladzad-Abbasabadi A, Walter K, Kearns PJ, Vasquez-Guzman J, Mamidi S, Lee R, Shade AL, Jacobs JL, Chilivers MI, Lowry DB, McClean P, Osorno JM. Genetic Analysis of Flooding Tolerance in an Andean Diversity Panel of Dry Bean ( L.). Frontiers in Plant Science. 9: 767. PMID 29928287 DOI: 10.3389/Fpls.2018.00767  0.64
2018 McClean PE, Bett KE, Stonehouse R, Lee R, Pflieger S, Moghaddam SM, Geffroy V, Miklas P, Mamidi S. White seed color in common bean (Phaseolus vulgaris) results from convergent evolution in the P (pigment) gene. The New Phytologist. PMID 29897103 DOI: 10.1111/Nph.15259  0.64
2018 Lorang JM, Hagerty CH, Lee R, McClean P, Wolpert T. Genetic analysis of victorin sensitivity and identification of a causal NLR gene in Phaseolus vulgaris. Molecular Plant-Microbe Interactions : Mpmi. PMID 29697298 DOI: 10.1094/Mpmi-12-17-0328-R  0.44
2018 Moghaddam SM, Brick MA, Echeverria D, Thompson HJ, Brick LA, Lee R, Mamidi S, McClean PE. Genetic Architecture of Dietary Fiber and Oligosaccharide Content in a Middle American Panel of Edible Dry Bean. The Plant Genome. 11. PMID 29505640 DOI: 10.3835/Plantgenome2017.08.0074  0.64
2017 Soltani A, MafiMoghaddam S, Walter K, Restrepo-Montoya D, Mamidi S, Schroder S, Lee R, McClean PE, Osorno JM. Genetic Architecture of Flooding Tolerance in the Dry Bean Middle-American Diversity Panel. Frontiers in Plant Science. 8: 1183. PMID 28729876 DOI: 10.3389/Fpls.2017.01183  0.64
2017 Todd AR, Donofrio N, Sripathi VR, McClean PE, Lee RK, Pastor-Corrales M, Kalavacharla VK. Marker-Assisted Molecular Profiling, Deletion Mutant Analysis, and RNA-Seq Reveal a Disease Resistance Cluster Associated with Uromyces appendiculatus Infection in Common Bean Phaseolus vulgaris L. International Journal of Molecular Sciences. 18. PMID 28545258 DOI: 10.3390/Ijms18061109  0.64
2017 Goff EE, Reindl KM, Johnson C, McClean P, Offerdahl EG, Schroeder NL, White AR. Learning about Chemiosmosis and ATP Synthesis with Animations Outside of the Classroom. Journal of Microbiology & Biology Education. 18. PMID 28512512 DOI: 10.1128/Jmbe.V18I1.1223  0.36
2017 Goff EE, Reindl KM, Johnson C, McClean P, Offerdahl EG, Schroeder NL, White AR. Efficacy of a Meiosis Learning Module Developed for the Virtual Cell Animation Collection. Cbe Life Sciences Education. 16. PMID 28188282 DOI: 10.1187/Cbe.16-03-0141  0.36
2016 Bitocchi E, Rau D, Benazzo A, Bellucci E, Goretti D, Biagetti E, Panziera A, Laidò G, Rodriguez M, Gioia T, Attene G, McClean P, Lee RK, Jackson SA, Bertorelle G, et al. High Level of Nonsynonymous Changes in Common Bean Suggests That Selection under Domestication Increased Functional Diversity at Target Traits. Frontiers in Plant Science. 7: 2005. PMID 28111584 DOI: 10.3389/Fpls.2016.02005  0.64
2016 Goff EE, Reindl KM, Johnson C, McClean P, Offerdahl EG, Schroeder NL, White AR. Variation in external representations as part of the classroom lecture:An investigation of virtual cell animations in introductory photosynthesis instruction. Biochemistry and Molecular Biology Education : a Bimonthly Publication of the International Union of Biochemistry and Molecular Biology. PMID 28032413 DOI: 10.1002/Bmb.21032  0.36
2016 Moghaddam SM, Mamidi S, Osorno JM, Lee R, Brick M, Kelly J, Miklas P, Urrea C, Song Q, Cregan P, Grimwood J, Schmutz J, McClean PE. Genome-Wide Association Study Identifies Candidate Loci Underlying Agronomic Traits in a Middle American Diversity Panel of Common Bean. The Plant Genome. 9. PMID 27902795 DOI: 10.3835/Plantgenome2016.02.0012  0.64
2016 Mamidi S, Miklas PN, Trapp J, Felicetti E, Grimwood J, Schmutz J, Lee R, McClean PE. Sequence-Based Introgression Mapping Identifies Candidate White Mold Tolerance Genes in Common Bean. The Plant Genome. 9. PMID 27898809 DOI: 10.3835/Plantgenome2015.09.0092  0.64
2016 Dhillon H, Mamidi S, McClean P, Reindl KM. Transcriptome Analysis of Piperlongumine-Treated Human Pancreatic Cancer Cells Reveals Involvement of Oxidative Stress and Endoplasmic Reticulum Stress Pathways. Journal of Medicinal Food. PMID 27119744 DOI: 10.1089/Jmf.2015.0152  0.64
2016 Mamidi S, Miklas PN, Trapp J, Felicetti E, Grimwood J, Schmutz J, Lee R, McClean PE. Sequence-based introgression mapping identifies candidate white mold tolerance genes in common bean Plant Genome. 9. DOI: 10.3835/plantgenome2015.09.0092  0.44
2016 ArifUzZaman M, Mamidi S, McClean P, Rahman M. QTL mapping for root vigor and days to flowering in Brassica napus L. Canadian Journal of Plant Science. 97: 99-109. DOI: 10.1139/Cjps-2016-0048  0.64
2015 Silveira RD, Abreu FR, Mamidi S, McClean PE, Vianello RP, Lanna AC, Carneiro NP, Brondani C. Expression of drought tolerance genes in tropical upland rice cultivars (Oryza sativa). Genetics and Molecular Research : Gmr. 14: 8181-200. PMID 26345744 DOI: 10.4238/2015.July.27.6  0.64
2015 Song Q, Jia G, Hyten DL, Jenkins J, Hwang EY, Schroeder SG, Osorno JM, Schmutz J, Jackson SA, McClean PE, Cregan PB. SNP Assay Development for Linkage Map Construction, Anchoring Whole Genome Sequence and Other Genetic and Genomic Applications in Common Bean. G3 (Bethesda, Md.). PMID 26318155 DOI: 10.1534/G3.115.020594  0.44
2015 Kertho A, Mamidi S, Bonman JM, McClean PE, Acevedo M. Genome-Wide Association Mapping for Resistance to Leaf and Stripe Rust in Winter-Habit Hexaploid Wheat Landraces. Plos One. 10: e0129580. PMID 26076040 DOI: 10.1371/Journal.Pone.0129580  0.64
2015 Reindl KM, White AR, Johnson C, Vender B, Slator BM, McClean P. The virtual cell animation collection: tools for teaching molecular and cellular biology. Plos Biology. 13: e1002118. PMID 25856580 DOI: 10.1371/Journal.Pbio.1002118  0.36
2015 Echeverry-Solarte M, Kumar A, Kianian S, Simsek S, Alamri MS, Mantovani EE, McClean PE, Deckard EL, Elias E, Schatz B, Xu SS, Mergoum M. New QTL alleles for quality-related traits in spring wheat revealed by RIL population derived from supernumerary × non-supernumerary spikelet genotypes. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 128: 893-912. PMID 25740563 DOI: 10.1007/S00122-015-2478-0  0.44
2015 Echeverry-Solarte M, Kumar A, Kianian S, Mantovani EEM, McClean PE, Deckard EL, Elias E, Simsek S, Alamri MS, Hegstad J, Schatz B, Mergoum M. Genome-wide mapping of spike-related and agronomic traits in a common wheat population derived from a supernumerary spikelet parent and an elite parent Plant Genome. 8. DOI: 10.3835/Plantgenome2014.12.0089  0.44
2015 Kertho A, Mamidi S, Bonman JM, McClean PE, Acevedo M. Genome-wide association mapping for resistance to leaf and stripe rust in winter-habit hexaploid wheat landraces Plos One. 10. DOI: 10.1371/journal.pone.0129580  0.44
2014 Bello MH, Moghaddam SM, Massoudi M, McClean PE, Cregan PB, Miklas PN. Application of in silico bulked segregant analysis for rapid development of markers linked to Bean common mosaic virus resistance in common bean. Bmc Genomics. 15: 903. PMID 25326146 DOI: 10.1186/1471-2164-15-903  0.44
2014 Mamidi S, Lee RK, Goos JR, McClean PE. Genome-wide association studies identifies seven major regions responsible for iron deficiency chlorosis in soybean (Glycine max). Plos One. 9: e107469. PMID 25225893 DOI: 10.1371/Journal.Pone.0107469  0.64
2014 Schmutz J, McClean PE, Mamidi S, Wu GA, Cannon SB, Grimwood J, Jenkins J, Shu S, Song Q, Chavarro C, Torres-Torres M, Geffroy V, Moghaddam SM, Gao D, Abernathy B, et al. A reference genome for common bean and genome-wide analysis of dual domestications. Nature Genetics. 46: 707-13. PMID 24908249 DOI: 10.1038/Ng.3008  0.44
2014 Moghaddam SM, Song Q, Mamidi S, Schmutz J, Lee R, Cregan P, Osorno JM, McClean PE. Developing market class specific InDel markers from next generation sequence data in Phaseolus vulgaris L. Frontiers in Plant Science. 5: 185. PMID 24860578 DOI: 10.3389/Fpls.2014.00185  0.64
2013 O'Rourke JA, Iniguez LP, Bucciarelli B, Roessler J, Schmutz J, McClean PE, Jackson SA, Hernandez G, Graham MA, Stupar RM, Vance CP. A re-sequencing based assessment of genomic heterogeneity and fast neutron-induced deletions in a common bean cultivar. Frontiers in Plant Science. 4: 210. PMID 23805147 DOI: 10.3389/Fpls.2013.00210  0.44
2013 Mamidi S, Rossi M, Moghaddam SM, Annam D, Lee R, Papa R, McClean PE. Demographic factors shaped diversity in the two gene pools of wild common bean Phaseolus vulgaris L. Heredity. 110: 267-76. PMID 23169559 DOI: 10.1038/Hdy.2012.82  0.44
2013 Rahman M, McClean P. Genetic Analysis on Flowering Time and Root System in Brassica napus L Crop Science. 53: 141-147. DOI: 10.2135/Cropsci2012.02.0095  0.4
2012 Bitocchi E, Nanni L, Bellucci E, Rossi M, Giardini A, Zeuli PS, Logozzo G, Stougaard J, McClean P, Attene G, Papa R. Mesoamerican origin of the common bean (Phaseolus vulgaris L.) is revealed by sequence data. Proceedings of the National Academy of Sciences of the United States of America. 109: E788-96. PMID 22393017 DOI: 10.1073/Pnas.1108973109  0.44
2011 Mamidi S, Rossi M, Annam D, Moghaddam S, Lee R, Papa R, McClean P. Investigation of the domestication of common bean (Phaseolus vulgaris) using multilocus sequence data. Functional Plant Biology : Fpb. 38: 953-967. PMID 32480954 DOI: 10.1071/Fp11124  0.64
2011 Galeano CH, Fernandez AC, Franco-Herrera N, Cichy KA, McClean PE, Vanderleyden J, Blair MW. Saturation of an intra-gene pool linkage map: towards a unified consensus linkage map for fine mapping and synteny analysis in common bean. Plos One. 6: e28135. PMID 22174773 DOI: 10.1371/Journal.Pone.0028135  0.44
2011 Shi C, Chaudhary S, Yu K, Park SJ, Navabi A, McClean PE. Identification of candidate genes associated with CBB resistance in common bean HR45 (Phaseolus vulgaris L.) using cDNA-AFLP. Molecular Biology Reports. 38: 75-81. PMID 20300860 DOI: 10.1007/S11033-010-0079-1  0.44
2011 Mamidi S, Rossi M, Annam D, Moghaddam S, Lee R, Papa R, McClean P. Investigation of the domestication of common bean (Phaseolus vulgaris) using multilocus sequence data Functional Plant Biology. 38: 953-967. DOI: 10.1071/FP11124  0.44
2010 McConnell M, Mamidi S, Lee R, Chikara S, Rossi M, Papa R, McClean P. Syntenic relationships among legumes revealed using a gene-based genetic linkage map of common bean (Phaseolus vulgaris L.). Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 121: 1103-16. PMID 20607211 DOI: 10.1007/S00122-010-1375-9  0.44
2010 Tian Z, Wang X, Lee R, Li Y, Specht JE, Nelson RL, McClean PE, Qiu L, Ma J. Artificial selection for determinate growth habit in soybean. Proceedings of the National Academy of Sciences of the United States of America. 107: 8563-8. PMID 20421496 DOI: 10.1073/pnas.1000088107  0.44
2010 McClean PE, Mamidi S, McConnell M, Chikara S, Lee R. Synteny mapping between common bean and soybean reveals extensive blocks of shared loci. Bmc Genomics. 11: 184. PMID 20298570 DOI: 10.1186/1471-2164-11-184  0.44
2008 Wang J, McClean PE, Lee R, Goos RJ, Helms T. Association mapping of iron deficiency chlorosis loci in soybean (Glycine max L. Merr.) advanced breeding lines. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 116: 777-87. PMID 18292984 DOI: 10.1007/s00122-008-0710-x  0.44
2007 McClean PE, Lee RK. Genetic architecture of chalcone isomerase non-coding regions in common bean (Phaseolus vulgaris L.). Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 50: 203-14. PMID 17546085 DOI: 10.1139/g07-001  0.44
2004 McClean PE, Lee RK, Miklas PN. Sequence diversity analysis of dihydroflavonol 4-reductase intron 1 in common bean. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 47: 266-80. PMID 15060579 DOI: 10.1139/g03-103  0.44
2003 Strausbaugh CA, Myers JR, Forster RL, McClean PE. A Quantitative Method to Screen Common Bean Plants for Resistance to Bean common mosaic necrosis virus. Phytopathology. 93: 1430-6. PMID 18944072 DOI: 10.1094/PHYTO.2003.93.11.1430  0.44
2002 Erdmann PM, Lee RK, Bassett MJ, McClean PE. A molecular marker tightly linked to P, a gene required for flower and seedcoat color in common bean (Phaseolus vulgaris L.), contains the Ty3-gypsy retrotransposon Tpv3g. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 45: 728-36. PMID 12175076 DOI: 10.1139/G02-037  0.64
2000 Kalavacharla V, Stavely JR, Myers JR, McClean PE. Crg, a gene required for Ur-3-mediated rust resistance in common bean, maps to a resistance gene analog cluster Molecular Plant-Microbe Interactions. 13: 1237-1242. PMID 11059490 DOI: 10.1094/MPMI.2000.13.11.1237  0.44
1995 Sayler RJ, Ewing JD, McClean PE. Monogenic and epistatic resistance to bean rust infection in common bean Physiological and Molecular Plant Pathology. 47: 173-184. DOI: 10.1006/pmpp.1995.1050  0.44
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