Suchit Jhunjhunwala, Ph.D. - Related publications

2009 Biology w/Spec Bioinformatics University of California, San Diego, La Jolla, CA 
Molecular Biology, Bioinformatics Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Kuzmin E, Monlong J, Martinez C, Kuasne H, Kleinman CL, Ragoussis J, Bourque G, Park M. Inferring Copy Number from Triple-Negative Breast Cancer Patient Derived Xenograft scRNAseq Data Using scCNA. Methods in Molecular Biology (Clifton, N.J.). 2381: 285-303. PMID 34590283 DOI: 10.1007/978-1-0716-1740-3_16   
2021 Li Y, Jin J, Bai F. Cancer biology deciphered by single-cell transcriptomic sequencing. Protein & Cell. PMID 34405376 DOI: 10.1007/s13238-021-00868-1   
2021 Kanwore K, Kambey PA, Guo XX, Abiola AA, Xia Y, Gao D. Extracellular and Intracellular Factors in Brain Cancer. Frontiers in Cell and Developmental Biology. 9: 699103. PMID 34513834 DOI: 10.3389/fcell.2021.699103   
2021 Cui M, Bai M, Zheng L, Bao Y, Sun L, Yu C, Sun Y, Song Z, Wang G, Yu Z, Li Y, Huang Y. Discovery and Verification of Key Liver Cancer Genes and Alternative Splicing Events Based on Second-Generation Sequencing Data Analysis. Biological & Pharmaceutical Bulletin. 44: 1433-1444. PMID 34602553 DOI: 10.1248/bpb.b21-00241   
2021 Yan Y, Liang Q, Xu Z, Yi Q. Integrative bioinformatics and experimental analysis revealed down-regulated CDC42EP3 as a novel prognostic target for ovarian cancer and its roles in immune infiltration. Peerj. 9: e12171. PMID 34616622 DOI: 10.7717/peerj.12171   
2021 Gao R, He B, Huang Q, Wang Z, Yan M, Wing-Fai Lam E, Lin S, Wang B, Liu Q. Cancer cell immune mimicry delineates onco-immunologic modulation. Iscience. 24: 103133. PMID 34632332 DOI: 10.1016/j.isci.2021.103133   
2021 Zhu H, Hu X, Ye Y, Jian Z, Zhong Y, Gu L, Xiong X. Pan-Cancer Analysis of PIMREG as a Biomarker for the Prognostic and Immunological Role. Frontiers in Genetics. 12: 687778. PMID 34594356 DOI: 10.3389/fgene.2021.687778   
2021 Buechel D, Sugiyama N, Rubinstein N, Saxena M, Kalathur RKR, Lüönd F, Vafaizadeh V, Valenta T, Hausmann G, Cantù C, Basler K, Christofori G. Parsing β-catenin's cell adhesion and Wnt signaling functions in malignant mammary tumor progression. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34408016 DOI: 10.1073/pnas.2020227118   
2021 Hyung D, Baek MJ, Lee J, Cho J, Kim HS, Park C, Cho SY. Protein-gene Expression Nexus: Comprehensive characterization of human cancer cell lines with proteogenomic analysis. Computational and Structural Biotechnology Journal. 19: 4759-4769. PMID 34504668 DOI: 10.1016/j.csbj.2021.08.022   
2021 Wu SZ, Al-Eryani G, Roden DL, Junankar S, Harvey K, Andersson A, Thennavan A, Wang C, Torpy JR, Bartonicek N, Wang T, Larsson L, Kaczorowski D, Weisenfeld NI, Uytingco CR, et al. A single-cell and spatially resolved atlas of human breast cancers. Nature Genetics. 53: 1334-1347. PMID 34493872 DOI: 10.1038/s41588-021-00911-1   
2021 Li Y, Zhang Y, Yu X, Liu Q, Gong H, Chen AA, Zheng H, Zhong S. SAGE1: a potential target antigen for lung cancer T-cell immunotherapy. Molecular Cancer Therapeutics. PMID 34465596 DOI: 10.1158/1535-7163.MCT-21-0203   
2021 Kikuchi Y, Tokita S, Hirama T, Kochin V, Nakatsugawa M, Shinkawa T, Hirohashi Y, Tsukahara T, Hata F, Takemasa I, Sato N, Kanaseki T, Torigoe T. CD8+ T-cell immune surveillance against a tumor antigen encoded by the oncogenic long non-coding RNA, PVT1. Cancer Immunology Research. PMID 34433589 DOI: 10.1158/2326-6066.CIR-20-0964   
2021 Song L, Qi S, Hu W, Fang Z, Yu D, Liu T, Wu J, Wu Y, Wu A, Feng L, Xie J, Zhang B, He W, Ning Z, Liu L, et al. Integrative analysis reveals clinically relevant molecular fingerprints in pancreatic cancer. Molecular Therapy. Nucleic Acids. 26: 11-21. PMID 34513290 DOI: 10.1016/j.omtn.2021.06.015   
2021 Chen H, Jiang Y, Mruk DD, Cheng CY. Unraveling the Regulation of Cancer/Testis Antigens in Tumorigenesis Through an Analysis of Normal Germ Cell Development in Rodents. Advances in Experimental Medicine and Biology. 1288: 69-93. PMID 34453732 DOI: 10.1007/978-3-030-77779-1_4   
2021 Veen LM, Skrabanja TLP, Derks S, de Gruijl TD, Bijlsma MF, van Laarhoven HWM. The role of transforming growth factor β in upper gastrointestinal cancers: A systematic review. Cancer Treatment Reviews. 100: 102285. PMID 34536730 DOI: 10.1016/j.ctrv.2021.102285   
2021 Akasu M, Shimada S, Kabashima A, Akiyama Y, Shimokawa M, Akahoshi K, Kudo A, Yamaoka S, Tanabe M, Tanaka S. Intrinsic activation of β-catenin signaling by CRISPR/Cas9-mediated exon skipping contributes to immune evasion in hepatocellular carcinoma. Scientific Reports. 11: 16732. PMID 34429454 DOI: 10.1038/s41598-021-96167-0   
2021 Chang YS, Hsu MH, Tu SJ, Yen JC, Lee YT, Fang HY, Chang JG. Metatranscriptomic Analysis of Human Lung Metagenomes from Patients with Lung Cancer. Genes. 12. PMID 34573440 DOI: 10.3390/genes12091458   
2021 Wang L, Peng Q, Yin N, Xie Y, Xu J, Chen A, Yi J, Tang J, Xiang J. Chromatin accessibility regulates chemotherapy-induced dormancy and reactivation. Molecular Therapy. Nucleic Acids. 26: 269-279. PMID 34513309 DOI: 10.1016/j.omtn.2021.07.019   
2021 Dagg RA, Zonderland G, Lombardi EP, Rossetti GG, Groelly FJ, Barroso S, Tacconi EMC, Wright B, Lockstone H, Aguilera A, Halazonetis TD, Tarsounas M. A transcription-based mechanism for oncogenic β-catenin-induced lethality in BRCA1/2-deficient cells. Nature Communications. 12: 4919. PMID 34389725 DOI: 10.1038/s41467-021-25215-0   
2021 Zhang H, Kong L, Zhang Y, Wang C, Sun L. Transcriptome and proteome analysis of the antitumor activity of maslinic acid against pancreatic cancer cells. Aging. 13. PMID 34637398 DOI: 10.18632/aging.203623   
2021 Castro J, Tornillo G, Ceada G, Ramos-Neble B, Bravo M, Ribó M, Vilanova M, Smalley MJ, Benito A. A Nuclear-Directed Ribonuclease Variant Targets Cancer Stem Cells and Inhibits Migration and Invasion of Breast Cancer Cells. Cancers. 13. PMID 34503160 DOI: 10.3390/cancers13174350   
2021 Cai S, Yao D, Zhang Y, Li Z, Li X, Li L. Cautions should be Taken when Using Cell Models for Gastric Cancer Research. Gene. 145922. PMID 34454032 DOI: 10.1016/j.gene.2021.145922   
2021 Lawal B, Tseng SH, Olugbodi JO, Iamsaard S, Ilesanmi OB, Mahmoud MH, Ahmed SH, Batiha GE, Wu ATH. Pan-Cancer Analysis of Immune Complement Signature C3/C5/C3AR1/C5AR1 in Association with Tumor Immune Evasion and Therapy Resistance. Cancers. 13. PMID 34439277 DOI: 10.3390/cancers13164124   
2021 Chen J, Hu Y, Teng Y, Yang B. Increased Nuclear Transporter Importin 7 Contributes to the Tumor Growth and Correlates With CD8 T Cell Infiltration in Cervical Cancer. Frontiers in Cell and Developmental Biology. 9: 732786. PMID 34650978 DOI: 10.3389/fcell.2021.732786   
2021 Zhao Y, Hu S, Zhang J, Cai Z, Wang S, Liu M, Dai J, Gao Y. Glucoside xylosyltransferase 2 as a diagnostic and prognostic marker in gastric cancer via comprehensive analysis. Bioengineered. 12: 5641-5654. PMID 34506251 DOI: 10.1080/21655979.2021.1967067   
2021 Kumar V, Ramnarayanan K, Sundar R, Padmanbahan N, Srivastava S, Koiwa M, Yasuda T, Koh V, Huang KK, Tay ST, Ho SWT, Tan ALK, Ishimoto T, Kim G, Shabbir A, et al. Single-cell atlas of lineage states, tumor microenvironment and subtype-specific expression programs in gastric cancer. Cancer Discovery. PMID 34642171 DOI: 10.1158/2159-8290.CD-21-0683   
2021 Wu SY, Lin KC, Lawal B, Wu ATH, Wu CZ. MXD3 as an onco-immunological biomarker encompassing the tumor microenvironment, disease staging, prognoses, and therapeutic responses in multiple cancer types. Computational and Structural Biotechnology Journal. 19: 4970-4983. PMID 34584637 DOI: 10.1016/j.csbj.2021.08.047   
2021 Eke I, Aryankalayil MJ, Bylicky MA, Sandfort V, Vanpouille-Box C, Nandagopal S, Graves EE, Giaccia AJ, Coleman CN. Long-term expression changes of immune-related genes in prostate cancer after radiotherapy. Cancer Immunology, Immunotherapy : Cii. PMID 34435232 DOI: 10.1007/s00262-021-03036-w   
2021 Liu PF, Shu CW, Lee CH, Sie HC, Liou HH, Cheng JT, Ger LP, Chen CL, Chen CC, Chen CF. Clinical Significance and the Role of Guanylate-Binding Protein 5 in Oral Squamous Cell Carcinoma. Cancers. 13. PMID 34439200 DOI: 10.3390/cancers13164043   
2021 Chen CL, Meng E, Wu ST, Lai HF, Lu YS, Yang MH, Tsao CW, Kao CC, Chiu YL. Targeting May Result in Enhanced Migration of Cancer Cells in Bladder Carcinoma. Cancers. 13. PMID 34503284 DOI: 10.3390/cancers13174474   
2021 Kamber RA, Nishiga Y, Morton B, Banuelos AM, Barkal AA, Vences-Catalán F, Gu M, Fernandez D, Seoane JA, Yao D, Liu K, Lin S, Spees K, Curtis C, Jerby-Arnon L, et al. Inter-cellular CRISPR screens reveal regulators of cancer cell phagocytosis. Nature. PMID 34497417 DOI: 10.1038/s41586-021-03879-4   
2021 Wu R, Shen Q, Li G, Li P, Shang N. The Regulatory Network of Sturgeon Chondroitin Sulfate on Colorectal Cancer Inhibition by Transcriptomic and Proteomic Analysis. International Journal of Molecular Sciences. 22. PMID 34502301 DOI: 10.3390/ijms22179395   
2021 Uhlitz F, Bischoff P, Peidli S, Sieber A, Trinks A, Lüthen M, Obermayer B, Blanc E, Ruchiy Y, Sell T, Mamlouk S, Arsie R, Wei TT, Klotz-Noack K, Schwarz RF, et al. Mitogen-activated protein kinase activity drives cell trajectories in colorectal cancer. Embo Molecular Medicine. e14123. PMID 34409732 DOI: 10.15252/emmm.202114123   
2021 Teng YHF, Quah HS, Suteja L, Dias JML, Mupo A, Bashford-Rogers RJM, Vassiliou GS, Chua MLK, Tan DSW, Lim DWT, Iyer NG. Analysis of T cell receptor clonotypes in tumor microenvironment identifies shared cancer-type-specific signatures. Cancer Immunology, Immunotherapy : Cii. PMID 34580764 DOI: 10.1007/s00262-021-03047-7   
2021 Yoshimatsu Y, Noguchi R, Sin Y, Tsuchiya R, Ono T, Sei A, Sugaya J, Iwata S, Yoshida A, Kawai A, Kondo T. Establishment and characterization of NCC-LGFMS1-C1: a novel patient-derived cell line of low-grade fibromyxoid sarcoma. Human Cell. PMID 34535876 DOI: 10.1007/s13577-021-00612-1   
2021 Shi X, Ding K, Zhao Q, Li P, Kang Y, Tan S, Sun J. Suppression of CPSF6 Enhances Apoptosis Through Alternative Polyadenylation-Mediated Shortening of the 3'UTR in Gastric Cancer Cells. Frontiers in Genetics. 12: 707644. PMID 34594359 DOI: 10.3389/fgene.2021.707644   
2021 Ionkina AA, Balderrama-Gutierrez G, Ibanez KJ, Phan SHD, Cortez AN, Mortazavi A, Prescher JA. Transcriptome analysis of heterogeneity in mouse model of metastatic breast cancer. Breast Cancer Research : Bcr. 23: 93. PMID 34579762 DOI: 10.1186/s13058-021-01468-x   
2021 Gu S, Qian L, Zhang Y, Chen K, Li Y, Wang J, Wang P. Significance of intratumoral infiltration of B cells in cancer immunotherapy: From a single cell perspective. Biochimica Et Biophysica Acta. Reviews On Cancer. 188632. PMID 34626740 DOI: 10.1016/j.bbcan.2021.188632   
2021 Liu A, Zhou K, Martínez MA, Lopez-Torres B, Martínez M, Martínez-Larrañaga MR, Wang X, Anadón A, Ares I. A "Janus" face of the RASSF4 signal in cell fate. Journal of Cellular Physiology. PMID 34553373 DOI: 10.1002/jcp.30592   
2021 Zboril E, Yoo H, Chen L, Liu Z. Dynamic Interactions of Transcription Factors and Enhancer Reprogramming in Cancer Progression. Frontiers in Oncology. 11: 753051. PMID 34616687 DOI: 10.3389/fonc.2021.753051   
2021 Stubbs CK, Biancucci M, Vidimar V, Satchell KJF. RAS specific protease induces irreversible growth arrest via p27 in several KRAS mutant colorectal cancer cell lines. Scientific Reports. 11: 17925. PMID 34504197 DOI: 10.1038/s41598-021-97422-0   
2021 Tay ASS, Amano T, Edwards LA, Yu JS. CD133 mRNA-transfected dendritic cells induce coordinated cytotoxic and helper T cell responses against breast cancer stem cells. Molecular Therapy Oncolytics. 22: 64-71. PMID 34485687 DOI: 10.1016/j.omto.2021.05.006   
2021 Lee K, Oh HJ, Kang MS, Kim S, Ahn S, Kim MJ, Kim SW, Chang S. Metagenomic analysis of gut microbiome reveals a dynamic change in Alistipes onderdonkii in the preclinical model of pancreatic cancer, suppressing its proliferation. Applied Microbiology and Biotechnology. PMID 34648062 DOI: 10.1007/s00253-021-11617-z   
2021 Zou L, He H, Li Z, Chen O, Jia X, Zhang H. Long noncoding RNA LINC00261 upregulates ITIH5 to impair tumorigenic ability of pancreatic cancer stem cells. Cell Death Discovery. 7: 220. PMID 34446696 DOI: 10.1038/s41420-021-00575-0   
2021 Yue E, Yang G, Yao Y, Wang G, Mohanty A, Fan F, Zhao L, Zhang Y, Mirzapoiazova T, Walser TC, Rodriguez-Rodriguez L, Fong Y, Salgia R, Wang EW. Targeting CA-125 Transcription by Development of a Conditionally Replicative Adenovirus for Ovarian Cancer Treatment. Cancers. 13. PMID 34503075 DOI: 10.3390/cancers13174265   
2021 Wong C, Li B. AutoCAT: Automated cancer-associated TCRs discovery from TCR-seq data. Bioinformatics (Oxford, England). PMID 34529039 DOI: 10.1093/bioinformatics/btab661   
2021 Gilmore TD. NF-κB and Human Cancer: What Have We Learned over the Past 35 Years? Biomedicines. 9. PMID 34440093 DOI: 10.3390/biomedicines9080889   
2021 Fan Y, Sun Q, Li X, Feng J, Ao Z, Li X, Wang J. Substrate Stiffness Modulates the Growth, Phenotype, and Chemoresistance of Ovarian Cancer Cells. Frontiers in Cell and Developmental Biology. 9: 718834. PMID 34504843 DOI: 10.3389/fcell.2021.718834   
2021 Lin W, Beasley AB, Ardakani NM, Denisenko E, Calapre L, Jones M, Wood BA, Warburton L, Forrest ARR, Gray ES. Intra- and inter-tumoral heterogeneity of liver metastases in a patient with uveal melanoma revealed by single-cell RNA sequencing. Cold Spring Harbor Molecular Case Studies. PMID 34470851 DOI: 10.1101/mcs.a006111   
2021 Xue C, Cai X, Jia J. Long Non-coding RNA Double Homeobox A Pseudogene 8: A Novel Oncogenic Propellant in Human Cancer. Frontiers in Cell and Developmental Biology. 9: 709069. PMID 34631702 DOI: 10.3389/fcell.2021.709069