Sujan Mamidi, Ph.D. - Publications

Affiliations: 
2010 North Dakota State University, Fargo, ND, United States 
Area:
Plant Culture Agriculture, Genetics, Bioinformatics Biology

36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Lovell JT, Bentley NB, Bhattarai G, Jenkins JW, Sreedasyam A, Alarcon Y, Bock C, Boston LB, Carlson J, Cervantes K, Clermont K, Duke S, Krom N, Kubenka K, Mamidi S, et al. Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding. Nature Communications. 12: 4125. PMID 34226565 DOI: 10.1038/s41467-021-24328-w  0.32
2021 Li H, Hu X, Lovell JT, Grabowski PP, Mamidi S, Chen C, Amirebrahimi M, Kahanda I, Mumey B, Barry K, Kudrna D, Schmutz J, Lachowiec J, Lu C. Genetic dissection of natural variation in oilseed traits of camelina by whole-genome resequencing and QTL mapping. The Plant Genome. e20110. PMID 34106529 DOI: 10.1002/tpg2.20110  0.32
2021 Moghaddam SM, Oladzad A, Koh C, Ramsay L, Hart JP, Mamidi S, Hoopes G, Sreedasyam A, Wiersma A, Zhao D, Grimwood J, Hamilton JP, Jenkins J, Vaillancourt B, Wood JC, et al. The tepary bean genome provides insight into evolution and domestication under heat stress. Nature Communications. 12: 2638. PMID 33976152 DOI: 10.1038/s41467-021-22858-x  0.4
2021 Lovell JT, MacQueen AH, Mamidi S, Bonnette J, Jenkins J, Napier JD, Sreedasyam A, Healey A, Session A, Shu S, Barry K, Bonos S, Boston L, Daum C, Deshpande S, et al. Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass. Nature. PMID 33505029 DOI: 10.1038/s41586-020-03127-1  0.32
2020 Hofmeister BT, Denkena J, Colomé-Tatché M, Shahryary Y, Hazarika R, Grimwood J, Mamidi S, Jenkins J, Grabowski PP, Sreedasyam A, Shu S, Barry K, Lail K, Adam C, Lipzen A, et al. A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa. Genome Biology. 21: 259. PMID 33023654 DOI: 10.1186/s13059-020-02162-5  0.32
2020 Mamidi S, Healey A, Huang P, Grimwood J, Jenkins J, Barry K, Sreedasyam A, Shu S, Lovell JT, Feldman M, Wu J, Yu Y, Chen C, Johnson J, Sakakibara H, et al. A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci. Nature Biotechnology. 38: 1203-1210. PMID 33020633 DOI: 10.1038/s41587-020-0681-2  0.32
2019 Pereira WJ, Melo ATO, Coelho ASG, Rodrigues FA, Mamidi S, Alencar SA, Lanna AC, Valdisser PAMR, Brondani C, Nascimento-Júnior IRD, Borba TCO, Vianello RP. [PROVISIONAL] Genome-wide analysis of the transcriptional response to drought stress in root and leaf of common bean. Genetics and Molecular Biology. PMID 31429863 DOI: 10.1590/1678-4685-Gmb-2018-0259  0.36
2018 Lovell JT, Jenkins J, Lowry DB, Mamidi S, Sreedasyam A, Weng X, Barry K, Bonnette J, Campitelli B, Daum C, Gordon SP, Gould BA, Khasanova A, Lipzen A, MacQueen A, et al. The genomic landscape of molecular responses to natural drought stress in Panicum hallii. Nature Communications. 9: 5213. PMID 30523281 DOI: 10.1038/S41467-018-07669-X  0.32
2018 Gould BA, Palacio-Mejia JD, Jenkins J, Mamidi S, Barry K, Schmutz J, Juenger TE, Lowry DB. Population genomics and climate adaptation of a C4 perennial grass, Panicum hallii (Poaceae). Bmc Genomics. 19: 792. PMID 30384830 DOI: 10.1186/S12864-018-5179-7  0.32
2018 Soltani A, MafiMoghaddam S, Oladzad-Abbasabadi A, Walter K, Kearns PJ, Vasquez-Guzman J, Mamidi S, Lee R, Shade AL, Jacobs JL, Chilivers MI, Lowry DB, McClean P, Osorno JM. Genetic Analysis of Flooding Tolerance in an Andean Diversity Panel of Dry Bean ( L.). Frontiers in Plant Science. 9: 767. PMID 29928287 DOI: 10.3389/Fpls.2018.00767  0.56
2018 McClean PE, Bett KE, Stonehouse R, Lee R, Pflieger S, Moghaddam SM, Geffroy V, Miklas P, Mamidi S. White seed color in common bean (Phaseolus vulgaris) results from convergent evolution in the P (pigment) gene. The New Phytologist. PMID 29897103 DOI: 10.1111/Nph.15259  0.4
2018 Moghaddam SM, Brick MA, Echeverria D, Thompson HJ, Brick LA, Lee R, Mamidi S, McClean PE. Genetic Architecture of Dietary Fiber and Oligosaccharide Content in a Middle American Panel of Edible Dry Bean. The Plant Genome. 11. PMID 29505640 DOI: 10.3835/Plantgenome2017.08.0074  0.4
2017 Soltani A, MafiMoghaddam S, Walter K, Restrepo-Montoya D, Mamidi S, Schroder S, Lee R, McClean PE, Osorno JM. Genetic Architecture of Flooding Tolerance in the Dry Bean Middle-American Diversity Panel. Frontiers in Plant Science. 8: 1183. PMID 28729876 DOI: 10.3389/Fpls.2017.01183  0.56
2017 Rahaman M, Mamidi S, Rahman M. Association mapping of agronomic traits of canola ('Brassica napus' L.) subject to heat stress under field conditions Australian Journal of Crop Science. 11: 1094-1105. DOI: 10.21475/Ajcs.17.11.09.Pne512  0.44
2016 Moghaddam SM, Mamidi S, Osorno JM, Lee R, Brick M, Kelly J, Miklas P, Urrea C, Song Q, Cregan P, Grimwood J, Schmutz J, McClean PE. Genome-Wide Association Study Identifies Candidate Loci Underlying Agronomic Traits in a Middle American Diversity Panel of Common Bean. The Plant Genome. 9. PMID 27902795 DOI: 10.3835/Plantgenome2016.02.0012  0.56
2016 Mamidi S, Miklas PN, Trapp J, Felicetti E, Grimwood J, Schmutz J, Lee R, McClean PE. Sequence-Based Introgression Mapping Identifies Candidate White Mold Tolerance Genes in Common Bean. The Plant Genome. 9. PMID 27898809 DOI: 10.3835/Plantgenome2015.09.0092  0.4
2016 Dhillon H, Mamidi S, McClean P, Reindl KM. Transcriptome Analysis of Piperlongumine-Treated Human Pancreatic Cancer Cells Reveals Involvement of Oxidative Stress and Endoplasmic Reticulum Stress Pathways. Journal of Medicinal Food. PMID 27119744 DOI: 10.1089/Jmf.2015.0152  0.44
2016 ArifUzZaman M, Mamidi S, McClean P, Rahman M. QTL mapping for root vigor and days to flowering in Brassica napus L. Canadian Journal of Plant Science. 97: 99-109. DOI: 10.1139/Cjps-2016-0048  0.44
2016 Rahman M, Mamidi S, del Rio L, Ross A, Kadir MM, Rahaman MM, Arifuzzaman M. Association mapping in Brassica napus (L.) accessions identifies a major QTL for blackleg disease resistance on chromosome A01 Molecular Breeding. 36. DOI: 10.1007/S11032-016-0513-8  0.36
2016 Schröder S, Mamidi S, Lee R, McKain MR, McClean PE, Osorno JM. Optimization of genotyping by sequencing (GBS) data in common bean (Phaseolus vulgaris L.) Molecular Breeding. 36: 1-9. DOI: 10.1007/S11032-015-0431-1  0.36
2015 Silveira RD, Abreu FR, Mamidi S, McClean PE, Vianello RP, Lanna AC, Carneiro NP, Brondani C. Expression of drought tolerance genes in tropical upland rice cultivars (Oryza sativa). Genetics and Molecular Research : Gmr. 14: 8181-200. PMID 26345744 DOI: 10.4238/2015.July.27.6  0.4
2015 Kertho A, Mamidi S, Bonman JM, McClean PE, Acevedo M. Genome-Wide Association Mapping for Resistance to Leaf and Stripe Rust in Winter-Habit Hexaploid Wheat Landraces. Plos One. 10: e0129580. PMID 26076040 DOI: 10.1371/Journal.Pone.0129580  0.4
2015 Kertho A, Mamidi S, Bonman JM, McClean PE, Acevedo M. Genome-wide association mapping for resistance to leaf and stripe rust in winter-habit hexaploid wheat landraces Plos One. 10. DOI: 10.1371/journal.pone.0129580  0.36
2014 Gurung S, Mamidi S, Bonman JM, Xiong M, Brown-Guedira G, Adhikari TB. Genome-wide association study reveals novel quantitative trait Loci associated with resistance to multiple leaf spot diseases of spring wheat. Plos One. 9: e108179. PMID 25268502 DOI: 10.1371/Journal.Pone.0108179  0.36
2014 Mamidi S, Lee RK, Goos JR, McClean PE. Genome-wide association studies identifies seven major regions responsible for iron deficiency chlorosis in soybean (Glycine max). Plos One. 9: e107469. PMID 25225893 DOI: 10.1371/Journal.Pone.0107469  0.4
2014 Schmutz J, McClean PE, Mamidi S, Wu GA, Cannon SB, Grimwood J, Jenkins J, Shu S, Song Q, Chavarro C, Torres-Torres M, Geffroy V, Moghaddam SM, Gao D, Abernathy B, et al. A reference genome for common bean and genome-wide analysis of dual domestications. Nature Genetics. 46: 707-13. PMID 24908249 DOI: 10.1038/Ng.3008  0.36
2014 Moghaddam SM, Song Q, Mamidi S, Schmutz J, Lee R, Cregan P, Osorno JM, McClean PE. Developing market class specific InDel markers from next generation sequence data in Phaseolus vulgaris L. Frontiers in Plant Science. 5: 185. PMID 24860578 DOI: 10.3389/Fpls.2014.00185  0.56
2013 Mamidi S, Rossi M, Moghaddam SM, Annam D, Lee R, Papa R, McClean PE. Demographic factors shaped diversity in the two gene pools of wild common bean Phaseolus vulgaris L. Heredity. 110: 267-76. PMID 23169559 DOI: 10.1038/Hdy.2012.82  0.36
2013 Patel JS, Mamidi S, Michael Bonman J, Adhikari TB. Identification of QTL in spring wheat associated with resistance to a novel isolate of Pyrenophora tritici-repentis Crop Science. 53: 842-852. DOI: 10.2135/Cropsci2012.01.0036  0.36
2012 Iqbal MJ, Mamidi S, Ahsan R, Kianian SF, Coyne CJ, Hamama AA, Narina SS, Bhardwaj HL. Population structure and linkage disequilibrium in Lupinus albus L. germplasm and its implication for association mapping. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 125: 517-30. PMID 22454146 DOI: 10.1007/S00122-012-1850-6  0.36
2011 Mamidi S, Rossi M, Annam D, Moghaddam S, Lee R, Papa R, McClean P. Investigation of the domestication of common bean (Phaseolus vulgaris) using multilocus sequence data. Functional Plant Biology : Fpb. 38: 953-967. PMID 32480954 DOI: 10.1071/Fp11124  0.56
2011 Ghavami F, Elias EM, Mamidi S, Ansari O, Sargolzaei M, Adhikari T, Mergoum M, Kianian SF. Mixed model association mapping for fusarium head blight resistance in tunisian-derived durum wheat populations. G3 (Bethesda, Md.). 1: 209-18. PMID 22384332 DOI: 10.1534/G3.111.000489  0.36
2011 Gurung S, Mamidi S, Bonman JM, Jackson EW, del Río LE, Acevedo M, Mergoum M, Adhikari TB. Identification of novel genomic regions associated with resistance to Pyrenophora tritici-repentis races 1 and 5 in spring wheat landraces using association analysis. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 123: 1029-41. PMID 21744229 DOI: 10.1007/S00122-011-1645-1  0.36
2011 Mamidi S, Rossi M, Annam D, Moghaddam S, Lee R, Papa R, McClean P. Investigation of the domestication of common bean (Phaseolus vulgaris) using multilocus sequence data Functional Plant Biology. 38: 953-967. DOI: 10.1071/FP11124  0.36
2010 McConnell M, Mamidi S, Lee R, Chikara S, Rossi M, Papa R, McClean P. Syntenic relationships among legumes revealed using a gene-based genetic linkage map of common bean (Phaseolus vulgaris L.). Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 121: 1103-16. PMID 20607211 DOI: 10.1007/S00122-010-1375-9  0.36
2010 McClean PE, Mamidi S, McConnell M, Chikara S, Lee R. Synteny mapping between common bean and soybean reveals extensive blocks of shared loci. Bmc Genomics. 11: 184. PMID 20298570 DOI: 10.1186/1471-2164-11-184  0.36
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