Alvar R. Carlson, Ph.D. - Related publications

2004 University of Wisconsin, Madison, Madison, WI 
Agronomy Agriculture, Plant Pathology Agriculture
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Curion F, Handel AE, Attar M, Gallone G, Bowden R, Cader MZ, Clark MB. Targeted RNA sequencing enhances gene expression profiling of ultra-low input samples. Rna Biology. 1-13. PMID 32597303 DOI: 10.1080/15476286.2020.1777768   
2020 Wang X, Ye L, Lyu M, Ursache R, Löytynoja A, Mähönen AP. An inducible genome editing system for plants. Nature Plants. PMID 32601420 DOI: 10.1038/s41477-020-0695-2   
2020 Schmitz JF, Chain FJJ, Bornberg-Bauer E. Evolution of novel genes in three-spined stickleback populations. Heredity. PMID 32499660 DOI: 10.1038/s41437-020-0319-7   
2020 Ahmed F, Senthil-Kumar M, Dai X, Ramu VS, Lee S, Mysore KS, Zhao PX. pssRNAit-a web server for designing effective and specific plant siRNAs with genome-wide off-target assessment. Plant Physiology. PMID 32651189 DOI: 10.1104/pp.20.00293   
2020 Nebeluk N, Foster TP. Design, Validation and Evaluation of a SYBR Green-based Quantitative PCR Array for Comprehensive Analysis of Adenovirus Type 5 Transcriptional Patterns. Journal of Virological Methods. 113880. PMID 32413477 DOI: 10.1016/j.jviromet.2020.113880   
2020 Liu W. SemanticGO: a tool for gene functional similarity analysis in Arabidopsis thaliana and rice. Plant Science : An International Journal of Experimental Plant Biology. 297: 110527. PMID 32563466 DOI: 10.1016/j.plantsci.2020.110527   
2020 Yang J, Xu D, Yu W, Hao R, Wei J. Regulation of aureofuscin production by the PAS-LuxR family regulator AurJ3M. Enzyme and Microbial Technology. 137: 109532. PMID 32423669 DOI: 10.1016/j.enzmictec.2020.109532   
2020 Yang HY, Zhu HT, Cui YB. [Cloning and sequence analysis of leptin receptor overlapping transcript-like 1 gene from ]. Zhongguo Xue Xi Chong Bing Fang Zhi Za Zhi = Chinese Journal of Schistosomiasis Control. 32: 248-254. PMID 32468786 DOI: 10.16250/j.32.1374.2019244   
2020 Malatras A, Michalopoulos I, Duguez S, Butler-Browne G, Spuler S, Duddy WJ. MyoMiner: explore gene co-expression in normal and pathological muscle. Bmc Medical Genomics. 13: 67. PMID 32393257 DOI: 10.1186/s12920-020-0712-3   
2020 Debarba JA, Sehabiague MPC, Monteiro KM, Gerber AL, Vasconcelos ATR, Ferreira HB, Zaha A. Transcriptomic Analysis of the Early Strobilar Development of . Pathogens (Basel, Switzerland). 9. PMID 32545493 DOI: 10.3390/pathogens9060465   
2020 Seth S, Debnath S, Chakraborty NR. In silico analysis of functional linkage among arsenic induced MATE genes in rice. Biotechnology Reports (Amsterdam, Netherlands). 26: e00390. PMID 32435604 DOI: 10.1016/j.btre.2019.e00390   
2020 Liu C, Xu X, Kan J, Cheng ZM, Chang Y, Lin J, Li H. Genome-wide analysis of the C3H zinc finger family reveals its functions in salt stress responses of . Peerj. 8: e9328. PMID 32566409 DOI: 10.7717/peerj.9328   
2020 Wang XW, Lv JL, Shi YR, Guo LY. Comparative Transcriptome Analysis Revealed Genes Regulated by Histone Acetylation and Genes Related to Sex Hormone Biosynthesis in . Frontiers in Genetics. 11: 508. PMID 32508886 DOI: 10.3389/fgene.2020.00508   
2020 Wang XW, Lv JL, Shi YR, Guo LY. Comparative Transcriptome Analysis Revealed Genes Regulated by Histone Acetylation and Genes Related to Sex Hormone Biosynthesis in . Frontiers in Genetics. 11: 508. PMID 32508886 DOI: 10.3389/fgene.2020.00508   
2020 Wang J, Ling L, Cai H, Guo C. Gene-wide identification and expression analysis of the PMEI family genes in soybean (Glycine max). 3 Biotech. 10: 335. PMID 32656068 DOI: 10.1007/s13205-020-02328-9   
2020 Cheng Y, Li L, Qin Z, Li X, Qi F. Identification of castration-resistant prostate cancer-related hub genes using weighted gene co-expression network analysis. Journal of Cellular and Molecular Medicine. PMID 32485038 DOI: 10.1111/jcmm.15432   
2020 Han BA, Yang XP, Hosseini DK, Zhang P, Zhang Y, Yu JT, Chen S, Zhang F, Zhou T, Sun HY. Identification of candidate aberrantly methylated and differentially expressed genes in Esophageal squamous cell carcinoma. Scientific Reports. 10: 9735. PMID 32546690 DOI: 10.1038/s41598-020-66847-4   
2020 Kim P, Yiya K, Zhou X. FGviewer: an online visualization tool for functional features of human fusion genes. Nucleic Acids Research. PMID 32421816 DOI: 10.1093/nar/gkaa364   
2020 Yu J, Su Y, Sun J, Liu J, Li Z, Zhang B. Selection of stable reference genes for gene expression analysis in sweet potato (Ipomoea batatas L.). Molecular and Cellular Probes. 101610. PMID 32522510 DOI: 10.1016/j.mcp.2020.101610   
2020 Liu Q, Sun C, Han J, Li L, Wang K, Wang Y, Chen J, Zhao M, Wang Y, Zhang M. Identification, characterization and functional differentiation of the NAC gene family and its roles in response to cold stress in ginseng, Panax ginseng C.A. Meyer. Plos One. 15: e0234423. PMID 32525906 DOI: 10.1371/journal.pone.0234423   
2020 Liu J, Sun G, Pan S, Qin M, Ouyang R, Li Z, Huang J. The Cancer Genome Atlas (TCGA) based mA methylation-related genes predict prognosis in hepatocellular carcinoma. Bioengineered. 11: 759-768. PMID 32631107 DOI: 10.1080/21655979.2020.1787764   
2020 Wang L, Huang Q, Zhang L, Wang Q, Liang L, Liao B. Genome-Wide Characterization and Comparative Analysis of MYB Transcription Factors in Species. G3 (Bethesda, Md.). PMID 32471942 DOI: 10.1534/g3.120.401372   
2020 Piran M, Karbalaei R, Piran M, Aldahdooh J, Mirzaie M, Ansari-Pour N, Tang J, Jafari M. Can We Assume the Gene Expression Profile as a Proxy for Signaling Network Activity? Biomolecules. 10. PMID 32503292 DOI: 10.3390/biom10060850   
2020 Zhao Y, Zhou Y, Liu Y, Hao Y, Li M, Pu X, Li C, Wen Z. Uncovering the prognostic gene signatures for the improvement of risk stratification in cancers by using deep learning algorithm coupled with wavelet transform. Bmc Bioinformatics. 21: 195. PMID 32429941 DOI: 10.1186/s12859-020-03544-z   
2020 Li J, Gao K, Yang X, Khan WU, Guo B, Guo T, An X. Identification and characterization of the CONSTANS-like gene family and its expression profiling under light treatment in Populus. International Journal of Biological Macromolecules. PMID 32531358 DOI: 10.1016/j.ijbiomac.2020.06.056   
2020 Liu S, Wang W, Zhao Y, Liang K, Huang Y. Identification of Potential Key Genes for Pathogenesis and Prognosis in Prostate Cancer by Integrated Analysis of Gene Expression Profiles and the Cancer Genome Atlas. Frontiers in Oncology. 10: 809. PMID 32547947 DOI: 10.3389/fonc.2020.00809   
2020 Wu ZH, Zhou T, Sun HY. DNA methylation-based diagnostic and prognostic biomarkers of nasopharyngeal carcinoma patients. Medicine. 99: e20682. PMID 32541515 DOI: 10.1097/MD.0000000000020682   
2020 Kisová Z, Šoltýsová A, Bučková M, Beke G, Puškárová A, Pangallo D. Studying the Gene Expression of Under the Effect of Eight Essential Oils. Antibiotics (Basel, Switzerland). 9. PMID 32575356 DOI: 10.3390/antibiotics9060343   
2020 Kong Q, Deng R, Li X, Zeng Q, Zhang X, Yu X, Ren X. Based on RNA-Seq analysis identification and expression analysis of Trans-scripusinA synthesize-related genes of UV-treatment in postharvest grape fruit. Archives of Biochemistry and Biophysics. 108471. PMID 32622788 DOI: 10.1016/   
2020 Saripalli G, Singh K, Gautam T, Kumar S, Raghuvanshi S, Prasad P, Jain N, Sharma PK, Balyan HS, Gupta PK. Genome-wide analysis of H3K4me3 and H3K27me3 modifications due to Lr28 for leaf rust resistance in bread wheat (Triticum aestivum). Plant Molecular Biology. PMID 32627097 DOI: 10.1007/s11103-020-01029-4   
2020 Yang J, Wang Q, Luo H, He C, An B. HbWRKY40 plays an important role in the regulation of pathogen resistance in Hevea brasiliensis. Plant Cell Reports. PMID 32399673 DOI: 10.1007/s00299-020-02551-x   
2020 York TP, Latendresse SJ, Jackson-Cook C, Lapato DM, Moyer S, Wolen AR, Roberson-Nay R, Do EK, Murphy SK, Hoyo C, Fuemmeler BF, Strauss JF. Replicated umbilical cord blood DNA methylation loci associated with gestational age at birth. Epigenetics. 1-16. PMID 32448018 DOI: 10.1080/15592294.2020.1767277   
2020 Wu F, Shim J, Tan C. Orthogonal tuning of gene expression noise using CRISPR-Cas. Nucleic Acids Research. PMID 32479612 DOI: 10.1093/nar/gkaa451   
2020 Yu L, Wei M, Li F. Longitudinal Analysis of Gene Expression Changes During Cervical Carcinogenesis Reveals Potential Therapeutic Targets. Evolutionary Bioinformatics Online. 16: 1176934320920574. PMID 32489245 DOI: 10.1177/1176934320920574   
2020 Zhao N, Sheng M, Zhao J, Ma X, Wei Q, Song Q, Zhang K, Xu W, Sun C, Liu F, Su Z. Over-Expression of Delays Leaf Senescence in Rice ( L.). Frontiers in Bioengineering and Biotechnology. 8: 471. PMID 32509751 DOI: 10.3389/fbioe.2020.00471   
2020 Chen Q, Meng Z, Su R. WERFE: A Gene Selection Algorithm Based on Recursive Feature Elimination and Ensemble Strategy. Frontiers in Bioengineering and Biotechnology. 8: 496. PMID 32548100 DOI: 10.3389/fbioe.2020.00496   
2020 Fu Y, Yang J, Fan S, Zhao S, Shah SMA, Akram M, Rong R, Yang Y. A Novel Strategy Facilitates Reference Gene Selection by RT-qPCR Analysis in Kidney Yang Deficiency Syndrome Mice Infected with the Influenza A (H1N1) Virus. Biomed Research International. 2020: 9075165. PMID 32420381 DOI: 10.1155/2020/9075165   
2020 Zhou H, Luo J, Sun Q, Chen G, Wei Y, Zheng Y, Liu Y. Identification and expression profiling of and in a barley mutant. Journal of Genetics. 99. PMID 32482923   
2020 Tan YY, Du H, Wu X, Liu YH, Jiang M, Song SY, Wu L, Shu QY. Gene editing: an instrument for practical application of gene biology to plant breeding. Journal of Zhejiang University. Science. B. 21: 460-473. PMID 32478492 DOI: 10.1631/jzus.B1900633   
2020 Thillainadesan G, Xiao H, Holla S, Dhakshnamoorthy J, Jenkins LMM, Wheeler D, Grewal SIS. Conserved protein Pir2 mediates gene repression through cryptic introns in lncRNAs. Nature Communications. 11: 2412. PMID 32415063 DOI: 10.1038/s41467-020-16280-y   
2020 Berenguer M, Meyer KF, Yin J, Duester G. Discovery of genes required for body axis and limb formation by global identification of retinoic acid-regulated epigenetic marks. Plos Biology. 18: e3000719. PMID 32421711 DOI: 10.1371/journal.pbio.3000719   
2020 Cartland SP, Lin RCY, Genner S, Patil MS, Martínez GJ, Barraclough JY, Gloss B, Misra A, Patel S, Kavurma MM. Vascular transcriptome landscape of Trail mice: Implications and therapeutic strategies for diabetic vascular disease. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. PMID 32501591 DOI: 10.1096/fj.201902785R   
2020 Bhaskar Rao T, Chopperla R, Prathi NB, Balakrishnan M, Prakasam V, Laha GS, Balachandran SM, Mangrauthia SK. A Comprehensive Gene Expression Profile of Pectin Degradation Enzymes Reveals the Molecular Events during Cell Wall Degradation and Pathogenesis of Rice Sheath Blight Pathogen AG1-IA. Journal of Fungi (Basel, Switzerland). 6. PMID 32466257 DOI: 10.3390/jof6020071   
2020 Ye Z, Zeng Z, Wang D, Lei S, Shen Y, Chen Z. Identification of key genes associated with the progression of intrahepatic cholangiocarcinoma using weighted gene co-expression network analysis. Oncology Letters. 20: 483-494. PMID 32565973 DOI: 10.3892/ol.2020.11600   
2020 Borriello G, Russo V, Paradiso R, Riccardi MG, Criscuolo D, Verde G, Marasco R, Pedone PV, Galiero G, Baglivo I. Different Impacts of MucR Binding to the and Promoters on Gene Expression in 2308. Biomolecules. 10. PMID 32438765 DOI: 10.3390/biom10050788   
2020 Dong YM, Li M, He QE, Tong YF, Gao HZ, Zhang YZ, Wu YM, Hu J, Zhang N, Song K. Epigenome-Wide Tobacco-Related Methylation Signature Identification and Their Multilevel Regulatory Network Inference for Lung Adenocarcinoma. Biomed Research International. 2020: 2471915. PMID 32420331 DOI: 10.1155/2020/2471915   
2020 van der Sijde F, Li Y, Schraauwen R, de Koning W, van Eijck CHJ, Mustafa DAM. RNA from stabilized whole blood enables more comprehensive immune gene expression profiling compared to RNA from peripheral blood mononuclear cells. Plos One. 15: e0235413. PMID 32589655 DOI: 10.1371/journal.pone.0235413   
2020 Liu W, Wang Y, He H. CoFly: A gene coexpression database for the fruit fly Drosophila melanogaster. Archives of Insect Biochemistry and Physiology. e21693. PMID 32436316 DOI: 10.1002/arch.21693   
2020 Pan X, Liu W, Chai Y, Hu L, Wang J, Zhang Y. Identification of Hub Genes in Atypical Teratoid/Rhabdoid Tumor by Bioinformatics Analyses. Journal of Molecular Neuroscience : Mn. PMID 32440821 DOI: 10.1007/s12031-020-01587-8   
2020 Li S, Zhao W, Sun M. An Analysis Regarding the Association Between the Gene and Gastric Carcinogenesis. Frontiers in Genetics. 11: 620. PMID 32612640 DOI: 10.3389/fgene.2020.00620