Alvar R. Carlson, Ph.D. - Related publications

2004 University of Wisconsin, Madison, Madison, WI 
Agronomy Agriculture, Plant Pathology Agriculture
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50 most relevant papers in past 60 days:
Year Citation  Score
2019 Wu Z, Tang J, Zhuo J, Tian Y, Zhao F, Li Z, Yan Y, Yang R. Chromatin Signature and Transcription Factor Binding Provide a Predictive Basis for Understanding Plant Gene Expression. Plant & Cell Physiology. PMID 31038680 DOI: 10.1093/pcp/pcz051   
2019 Zhang W, Gao Y, Long M, Shen B. Origination and evolution of orphan genes and de novo genes in the genome of Caenorhabditis elegans. Science China. Life Sciences. PMID 30919281 DOI: 10.1007/s11427-019-9482-0   
2019 Brown A, Winter J, Gapinske M, Tague N, Woods WS, Perez-Pinera P. Multiplexed and tunable transcriptional activation by promoter insertion using nuclease-assisted vector integration. Nucleic Acids Research. PMID 30931472 DOI: 10.1093/nar/gkz210   
2019 Li Q, Shen Y, Guo L, Wang H, Zhang Y, Fan C, Zheng Y. The transcription factor family in soybean: Genome-wide identification, expression profiling and genetic diversity analysis. Febs Open Bio. 9: 629-642. PMID 30984538 DOI: 10.1002/2211-5463.12596   
2019 Guo X, Bai L, Li F, Huck W, Yang D. Branched DNA Architectures via PCR-based Assembly as Gene Compartment for Cell-free Gene Expression Reactions. Chembiochem : a European Journal of Chemical Biology. PMID 30938476 DOI: 10.1002/cbic.201900094   
2019 Al-Allaf FA, Abduljaleel Z, Athar M, Taher MM, Khan W, Mehmet H, Colakogullari M, Apostolidou S, Bigger B, Waddington S, Coutelle C, Themis M, Al-Ahdal MN, Al-Mohanna FA, Al-Hassnan ZN, et al. Modifying inter-cistronic sequence significantly enhances IRES dependent second gene expression in bicistronic vector: Construction of optimised cassette for gene therapy of familial hypercholesterolemia. Non-Coding Rna Research. 4: 1-14. PMID 30891532 DOI: 10.1016/j.ncrna.2018.11.005   
2019 Hossain MS, Ahmed R, Haque MS, Alam MM, Islam MS. Identification and validation of reference genes for real-time quantitative RT-PCR analysis in jute. Bmc Molecular Biology. 20: 13. PMID 31035927 DOI: 10.1186/s12867-019-0130-2   
2019 Shao F, Wang Y, Zhao Y, Yang S. Identifying and exploiting gene-pathway interactions from RNA-seq data for binary phenotype. Bmc Genetics. 20: 36. PMID 30890140 DOI: 10.1186/s12863-019-0739-7   
2019 Das S, Bansal M. Variation of gene expression in plants is influenced by gene architecture and structural properties of promoters. Plos One. 14: e0212678. PMID 30908494 DOI: 10.1371/journal.pone.0212678   
2019 Qanmber G, Liu J, Yu D, Liu Z, Lu L, Mo H, Ma S, Wang Z, Yang Z. Genome-Wide Identification and Characterization of the Gene Family in Reveals Gene Duplication and Functional Divergence. International Journal of Molecular Sciences. 20. PMID 30970629 DOI: 10.3390/ijms20071750   
2019 Feng H, Gu ZY, Li Q, Liu QH, Yang XY, Zhang JJ. Identification of significant genes with poor prognosis in ovarian cancer via bioinformatical analysis. Journal of Ovarian Research. 12: 35. PMID 31010415 DOI: 10.1186/s13048-019-0508-2   
2019 Cera A, Holganza MK, Hardan AA, Gamarra I, Eldabagh RS, Deschaine M, Elkamhawy S, Sisso EM, Foley JJ, Arnone JT. Functionally Related Genes Cluster into Genomic Regions That Coordinate Transcription at a Distance in Saccharomyces cerevisiae. Msphere. 4. PMID 30867326 DOI: 10.1128/mSphere.00063-19   
2019 Mack KL, Phifer-Rixey M, Harr B, Nachman MW. Gene Expression Networks Across Multiple Tissues Are Associated with Rates of Molecular Evolution in Wild House Mice. Genes. 10. PMID 30889893 DOI: 10.3390/genes10030225   
2019 Molina MD, Gache C, Lepage T. Expression of exogenous mRNAs to study gene function in echinoderm embryos. Methods in Cell Biology. 151: 239-282. PMID 30948011 DOI: 10.1016/bs.mcb.2018.10.011   
2019 Damasceno JD, Tosi LRO, Santos RERS, Mottram JC. DiCre-Based Inducible Gene Expression. Methods in Molecular Biology (Clifton, N.J.). 1971: 225-235. PMID 30980306 DOI: 10.1007/978-1-4939-9210-2_11   
2019 Yan H, Wang Y, Hu B, Qiu Z, Zeng B, Fan C. Genome-Wide Characterization, Evolution, and Expression Profiling of Gene Family in Response to Phytohormone Treatments and Abiotic Stress in . International Journal of Molecular Sciences. 20. PMID 30974801 DOI: 10.3390/ijms20071765   
2019 Wheeler HE, Ploch S, Barbeira AN, Bonazzola R, Andaleon A, Fotuhi Sishpirani A, Saha A, Battle A, Roy S, Im HK. Imputed gene associations identify replicable trans-acting genes enriched in transcription pathways and complex traits. Genetic Epidemiology. PMID 30950127 DOI: 10.1002/gepi.22205   
2019 Thomson G, Taylor J, Putterill J. The transcriptomic response to a short day to long day shift in leaves of the reference legume . Peerj. 7: e6626. PMID 30923654 DOI: 10.7717/peerj.6626   
2019 Song H, Sun J, Yang G. The characteristic of Arachis duranensis-specific genes and their potential function. Gene. PMID 31009681 DOI: 10.1016/j.gene.2019.04.052   
2019 Ma JQ, Wei LJ, Lin A, Zhang C, Sun W, Yang B, Lu K, Li JN. Infected with . Genes. 10. PMID 30979089 DOI: 10.3390/genes10040296   
2019 Armenta TC, Cole SW, Geschwind DH, Blumstein DT, Wayne RK. Gene expression shifts in yellow-bellied marmots prior to natal dispersal. Behavioral Ecology : Official Journal of the International Society For Behavioral Ecology. 30: 267-277. PMID 30971856 DOI: 10.1093/beheco/ary175   
2019 Zhu T, Xin F, Wei S, Liu Y, Han Y, Xie J, Ding Q, Ma L. Genome-wide identification, phylogeny and expression profiling of class III peroxidases gene family in Brachypodium distachyon. Gene. PMID 30904716 DOI: 10.1016/j.gene.2019.02.103   
2019 Liu J, Nie S, Gao M, Jiang Y, Wan Y, Ma X, Zhou S, Cheng W. Identification of EPHX2 and RMI2 as two novel key genes in cervical squamous cell carcinoma by an integrated bioinformatic analysis. Journal of Cellular Physiology. PMID 31041817 DOI: 10.1002/jcp.28731   
2019 Li Y, Zhang L, Li R, Zhang M, Li Y, Wang H, Wang S, Bao Z. Systematic identification and validation of the reference genes from 60 RNA-Seq libraries in the scallop Mizuhopecten yessoensis. Bmc Genomics. 20: 288. PMID 30975074 DOI: 10.1186/s12864-019-5661-x   
2019 Niu J, Yang WJ, Tian Y, Fan JY, Ye C, Shang F, Ding BY, Zhang J, An X, Yang L, Chang TY, Christiaens O, Smagghe G, Wang JJ. Topical dsRNA delivery induces gene silencing and mortality in the pea aphid. Pest Management Science. PMID 31038279 DOI: 10.1002/ps.5457   
2019 Zheng A, Sun F, Cheng T, Wang Y, Xie K, Zhang C, Xi Y. Genome-wide identification of members of the TCP gene family in switchgrass (Panicum virgatum L.) and analysis of their expression. Gene. PMID 30928363 DOI: 10.1016/j.gene.2019.03.059   
2019 Wang S, Zhang N, Zhu X, Yang J, Li S, Che Y, Liu W, Si H. Identification and expression analysis of StGRAS gene family in potato (Solanum tuberosum L.). Computational Biology and Chemistry. 80: 195-205. PMID 30978571 DOI: 10.1016/j.compbiolchem.2019.03.020   
2019 Xiang M, Zhang W, Wen H, Mo L, Zhao Y, Zhan Y. Comparative transcriptome analysis of human conjunctiva between normal and conjunctivochalasis persons by RNA sequencing. Experimental Eye Research. PMID 30999002 DOI: 10.1016/j.exer.2019.04.005   
2019 Meng H, Yaari G, Bolen CR, Avey S, Kleinstein SH. Gene set meta-analysis with Quantitative Set Analysis for Gene Expression (QuSAGE). Plos Computational Biology. 15: e1006899. PMID 30939133 DOI: 10.1371/journal.pcbi.1006899   
2019 Wang Y, Wang F, Xu S, Wang R, Chen W, Hou K, Tian C, Wang F, Zhao P, Xia Q. Optimization of a 2A self-cleaving peptide-based multigene expression system for efficient expression of upstream and downstream genes in silkworm. Molecular Genetics and Genomics : Mgg. PMID 30895377 DOI: 10.1007/s00438-019-01534-2   
2019 Qu Y, Ling L, Wang D, Zhang T, Guo C. Genome-wide identification and expression analysis of the AAAP family in Medicago truncatula. Genetica. PMID 30905050 DOI: 10.1007/s10709-019-00062-6   
2019 Grimes T, Potter SS, Datta S. Integrating gene regulatory pathways into differential network analysis of gene expression data. Scientific Reports. 9: 5479. PMID 30940863 DOI: 10.1038/s41598-019-41918-3   
2019 Bhowmick SS, Bhattacharjee D, Rato L. In silico markers: an evolutionary and statistical approach to select informative genes of human breast cancer subtypes. Genes & Genomics. PMID 31004329 DOI: 10.1007/s13258-019-00816-8   
2019 Duncan SM, Myburgh E, Alves-Ferreira EV, Mottram JC. DiCre-Based Inducible Disruption of Leishmania Genes. Methods in Molecular Biology (Clifton, N.J.). 1971: 211-224. PMID 30980305 DOI: 10.1007/978-1-4939-9210-2_10   
2019 Hu X, Hao C, Cheng ZM, Zhong Y. Genome-Wide Identification, Characterization, and Expression Analysis of the Grapevine Superoxide Dismutase (SOD) Family. International Journal of Genomics. 2019: 7350414. PMID 30923713 DOI: 10.1155/2019/7350414   
2019 Zhong X, Zhou Q, Cui N, Cai D, Tang G. and Genes Pyramiding Enhanced Beet Cyst Nematode ( Schm.) Resistance in Oilseed Rape ( L.). International Journal of Molecular Sciences. 20. PMID 30965683 DOI: 10.3390/ijms20071740   
2019 Dhawan A, Barberis A, Cheng WC, Domingo E, West C, Maughan T, Scott JG, Harris AL, Buffa FM. Guidelines for using sigQC for systematic evaluation of gene signatures. Nature Protocols. PMID 30971781 DOI: 10.1038/s41596-019-0136-8   
2019 Darma R, Lutz A, Elliott CE, Idnurm A. Identification of a gene cluster for the synthesis of the plant hormone abscisic acid in the plant pathogen Leptosphaeria maculans. Fungal Genetics and Biology : Fg & B. PMID 31034868 DOI: 10.1016/j.fgb.2019.04.015   
2019 Sung YK, Kim SW. Recent advances in the development of gene delivery systems. Biomaterials Research. 23: 8. PMID 30915230 DOI: 10.1186/s40824-019-0156-z   
2019 Wang S, Huang E, Cairns J, Peng J, Wang L, Sinha S. Identification of pathways associated with chemosensitivity through network embedding. Plos Computational Biology. 15: e1006864. PMID 30893303 DOI: 10.1371/journal.pcbi.1006864   
2019 Owens NDL, De Domenico E, Gilchrist MJ. An RNA-Seq Protocol for Differential Expression Analysis. Cold Spring Harbor Protocols. PMID 30952685 DOI: 10.1101/pdb.prot098368   
2019 Wu J, Wang B, Zhou J, Ji F. MicroRNA target gene prediction of ischemic stroke by using variational Bayesian inference for Gauss mixture model. Experimental and Therapeutic Medicine. 17: 2734-2740. PMID 30906463 DOI: 10.3892/etm.2019.7262   
2019 Liu X, Wu X, Sun C, Rong J. Identification and Expression Profiling of the Gene Family in L. under Abiotic Stress and Hormone Treatments. International Journal of Molecular Sciences. 20. PMID 30965557 DOI: 10.3390/ijms20071727   
2019 Ng WL, Wu W, Zou P, Zhou R. Comparative transcriptomics sheds light on differential adaptation and species diversification between two species and their F hybrid. Aob Plants. 11: plz019. PMID 31037213 DOI: 10.1093/aobpla/plz019   
2019 Mancuso N, Freund MK, Johnson R, Shi H, Kichaev G, Gusev A, Pasaniuc B. Probabilistic fine-mapping of transcriptome-wide association studies. Nature Genetics. 51: 675-682. PMID 30926970 DOI: 10.1038/s41588-019-0367-1   
2019 Rossmassler K, Snow CD, Taggart D, Brown C, De Long SK. Advancing biomarkers for anaerobic o-xylene biodegradation via metagenomic analysis of a methanogenic consortium. Applied Microbiology and Biotechnology. PMID 30968165 DOI: 10.1007/s00253-019-09762-7   
2019 Zhang YP, Ao S, Liu Y, Wang Y, Jia YM, Zhang H, Leng H. Identification of hub genes associated with postmenopausal osteoporosis by Gibbs sampling method. Experimental and Therapeutic Medicine. 17: 2675-2681. PMID 30906457 DOI: 10.3892/etm.2019.7231   
2019 Shah K, Cao W, Ellison CE. Adenine Methylation in Is Associated with the Tissue-Specific Expression of Developmental and Regulatory Genes. G3 (Bethesda, Md.). PMID 30988038 DOI: 10.1534/g3.119.400023   
2019 Yang W, Han J, Ma J, Feng Y, Hou Q, Wang Z, Yu T. Prediction of key gene function in spinal muscular atrophy using guilt by association method based on network and gene ontology. Experimental and Therapeutic Medicine. 17: 2561-2566. PMID 30906446 DOI: 10.3892/etm.2019.7216   
2019 Laarman MD, Geeven G, Barnett P, , Rinkel GJE, de Laat W, Ruigrok YM, Bakkers J. Chromatin Conformation Links Putative Enhancers in Intracranial Aneurysm-Associated Regions to Potential Candidate Genes. Journal of the American Heart Association. 8: e011201. PMID 30994044 DOI: 10.1161/JAHA.118.011201