Monica T. Britton, Ph.D. - Related publications

2009 Genetics University of California, Davis, Davis, CA 
Genetics, Plant Pathology Agriculture, Parasitology Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Nagy LG, Merényi Z, Hegedüs B, Bálint B. Novel phylogenetic methods are needed for understanding gene function in the era of mega-scale genome sequencing. Nucleic Acids Research. PMID 31943056 DOI: 10.1093/nar/gkz1241   
2020 Molina-Mora JA, Campos-Sánchez R, Rodríguez C, Shi L, García F. High quality 3C de novo assembly and annotation of a multidrug resistant ST-111 Pseudomonas aeruginosa genome: Benchmark of hybrid and non-hybrid assemblers. Scientific Reports. 10: 1392. PMID 31996747 DOI: 10.1038/s41598-020-58319-6   
2020 Louha S, Ray DA, Winker K, Glenn TC. A High-Quality Genome Assembly of the North American Song Sparrow, . G3 (Bethesda, Md.). PMID 32075855 DOI: 10.1534/g3.119.400929   
2020 Pyhäjärvi T, Kujala ST, Savolainen O. 275 years of forestry meets genomics in . Evolutionary Applications. 13: 11-30. PMID 31988655 DOI: 10.1111/eva.12809   
2020 Vu HT, Tran N, Nguyen TD, Vu QL, Bui MH, Le MT, Le L. Complete Chloroplast Genome of and Phylogenetic Relationships among Orchidaceae. Plants (Basel, Switzerland). 9. PMID 31906501 DOI: 10.3390/plants9010061   
2020 Hecker N, Hiller M. A genome alignment of 120 mammals highlights ultraconserved element variability and placenta-associated enhancers. Gigascience. 9. PMID 31899510 DOI: 10.1093/gigascience/giz159   
2020 Rasheed A, Takumi S, Hassan MA, Imtiaz M, Ali M, Morgunov AI, Mahmood T, He Z. Appraisal of wheat genomics for gene discovery and breeding applications: a special emphasis on advances in Asia. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 31897516 DOI: 10.1007/s00122-019-03523-w   
2020 Varshney RK, Sinha P, Singh VK, Kumar A, Zhang Q, Bennetzen JL. 5Gs for crop genetic improvement. Current Opinion in Plant Biology. PMID 32005553 DOI: 10.1016/j.pbi.2019.12.004   
2020 Komori T, Sun Y, Kashihara M, Uekawa N, Kato N, Usami S, Ishikawa N, Hiei Y, Kobayashi K, Kum R, Bortiri E, White K, Oeller P, Takemori N, Bate NJ, et al. High-throughput phenotypic screening of random genomic fragments in transgenic rice identified novel drought tolerance genes. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 31980835 DOI: 10.1007/s00122-020-03548-6   
2020 Lu L, Zhao J, Li C. High-Quality Genome Assembly and Annotation of the Big-Eye Mandarin Fish (). G3 (Bethesda, Md.). PMID 31953307 DOI: 10.1534/g3.119.400930   
2020 Chen G, Song W, Ying X. Horizontal Gene Transfer of Short-Chain Dehydrogenase Coding Genes Contribute to the Biofilm Formation and Pathogenicity on Mycobacterium grossiae sp. nov. PB739 (=DSM 104744). Current Microbiology. PMID 31907602 DOI: 10.1007/s00284-019-01832-3   
2020 Zhang J, Lei Y, Wang B, Li S, Yu S, Wang Y, Li H, Liu Y, Ma Y, Dai H, Wang J, Zhang Z. The high-quality genome of diploid strawberry (Fragaria nilgerrensis) provides new insights into anthocyanin accumulation. Plant Biotechnology Journal. PMID 32003918 DOI: 10.1111/pbi.13351   
2020 Afzal M, Alghamdi SS, Migdadi HH, Khan MA, Nurmansyah, Mirza SB, El-Harty E. Legume genomics and transcriptomics: From classic breeding to modern technologies. Saudi Journal of Biological Sciences. 27: 543-555. PMID 31889880 DOI: 10.1016/j.sjbs.2019.11.018   
2020 Herndon N, Shelton J, Gerischer L, Ioannidis P, Ninova M, Dönitz J, Waterhouse RM, Liang C, Damm C, Siemanowski J, Kitzmann P, Ulrich J, Dippel S, Oberhofer G, Hu Y, et al. Enhanced genome assembly and a new official gene set for Tribolium castaneum. Bmc Genomics. 21: 47. PMID 31937263 DOI: 10.1186/s12864-019-6394-6   
2020 Severn-Ellis AA, Scheben A, Neik TX, Saad NSM, Pradhan A, Batley J. Genotyping for Species Identification and Diversity Assessment Using Double-Digest Restriction Site-Associated DNA Sequencing (ddRAD-Seq). Methods in Molecular Biology (Clifton, N.J.). 2107: 159-187. PMID 31893447 DOI: 10.1007/978-1-0716-0235-5_8   
2020 Dornbos P, Arkatkar AA, LaPres JJ. An Automated Method To Predict Mouse Gene and Protein Sequences Using Variant Data. G3 (Bethesda, Md.). PMID 31911484 DOI: 10.1534/g3.119.400983   
2020 Szczerba H, Komoń-Janczara E, Krawczyk M, Dudziak K, Nowak A, Kuzdraliński A, Waśko A, Targoński Z. Genome analysis of a wild rumen bacterium Enterobacter aerogenes LU2 - a novel bio-based succinic acid producer. Scientific Reports. 10: 1986. PMID 32029880 DOI: 10.1038/s41598-020-58929-0   
2020 Khan A, Asaf S, Khan AL, Shehzad T, Al-Rawahi A, Al-Harrasi A. Comparative Chloroplast Genomics of Endangered Species: Insights into Hotspot Divergence, Repetitive Sequence Variation, and Phylogeny. Plants (Basel, Switzerland). 9. PMID 32033491 DOI: 10.3390/plants9020199   
2020 Borys SM, Younger ST. Identification of functional regulatory elements in the human genome using pooled CRISPR screens. Bmc Genomics. 21: 107. PMID 32005150 DOI: 10.1186/s12864-020-6497-0   
2020 Goodhead I, Blow F, Brownridge P, Hughes M, Kenny J, Krishna R, McLean L, Pongchaikul P, Beynon R, Darby AC. Large-scale and significant expression from pseudogenes in - a facultative bacterial endosymbiont. Microbial Genomics. PMID 31922467 DOI: 10.1099/mgen.0.000285   
2020 Sherman RM, Salzberg SL. Pan-genomics in the human genome era. Nature Reviews. Genetics. PMID 32034321 DOI: 10.1038/s41576-020-0210-7   
2020 Read AC, Moscou MJ, Zimin AV, Pertea G, Meyer RS, Purugganan MD, Leach JE, Triplett LR, Salzberg SL, Bogdanove AJ. Genome assembly and characterization of a complex zfBED-NLR gene-containing disease resistance locus in Carolina Gold Select rice with Nanopore sequencing. Plos Genetics. 16: e1008571. PMID 31986137 DOI: 10.1371/journal.pgen.1008571   
2020 Wei S, Wu H, Li X, Chen Y, Yang Y, Dai M, Yin T. Identification of Genes Underlying the Resistance to in an Gene Supercluster of the Genome. Plant Disease. PDIS08191699RE. PMID 32049587 DOI: 10.1094/PDIS-08-19-1699-RE   
2020 Nolte AW. Genomic Access to the Diversity of Fishes. Methods in Molecular Biology (Clifton, N.J.). 2090: 397-411. PMID 31975176 DOI: 10.1007/978-1-0716-0199-0_16   
2020 Lee N, Kim W, Hwang S, Lee Y, Cho S, Palsson B, Cho BK. Thirty complete Streptomyces genome sequences for mining novel secondary metabolite biosynthetic gene clusters. Scientific Data. 7: 55. PMID 32054853 DOI: 10.1038/s41597-020-0395-9   
2020 Saroj DB, Gupta AK. Genome based safety assessment for Bacillus coagulans strain LBSC (DSM 17654) for probiotic application. International Journal of Food Microbiology. 108523. PMID 31964505 DOI: 10.1016/j.ijfoodmicro.2020.108523   
2020 Zhang L, Xu Y, Zhang X, Ma X, Zhang L, Liao Z, Zhang Q, Wan X, Cheng Y, Zhang J, Li D, Zhang L, Xu J, Tao A, Lin L, et al. The genome of kenaf (Hibiscus cannabinus L.) provides insights into bast fiber and leaf shape biogenesis. Plant Biotechnology Journal. PMID 31975524 DOI: 10.1111/pbi.13341   
2020 Joly-Lopez Z, Platts AE, Gulko B, Choi JY, Groen SC, Zhong X, Siepel A, Purugganan MD. An inferred fitness consequence map of the rice genome. Nature Plants. PMID 32042156 DOI: 10.1038/s41477-019-0589-3   
2020 Ely B. Recombination and gene loss occur simultaneously during bacterial horizontal gene transfer. Plos One. 15: e0227987. PMID 31990919 DOI: 10.1371/journal.pone.0227987   
2020 Li Z, Fan YC, Chang PP, Gao LL, Wang X. Genome Sequence Resource for Elsinoë ampelina, the Causal Organism of Grapevine Anthracnose. Molecular Plant-Microbe Interactions : Mpmi. PMID 32013763 DOI: 10.1094/MPMI-12-19-0337-A   
2020 Sun X, Ding Y, Orr MC, Zhang F. Streamlining universal single-copy ortholog and ultraconserved element design: a case study in Collembola. Molecular Ecology Resources. PMID 32065730 DOI: 10.1111/1755-0998.13146   
2020 Zhang X, Wu R, Wang Y, Yu J, Tang H. Unzipping haplotypes in diploid and polyploid genomes. Computational and Structural Biotechnology Journal. 18: 66-72. PMID 31908732 DOI: 10.1016/j.csbj.2019.11.011   
2020 Kabadi A, McDonnell E, Frank CL, Drowley L. Applications of Functional Genomics for Drug Discovery. Slas Discovery : Advancing Life Sciences R & D. 2472555220902092. PMID 32026742 DOI: 10.1177/2472555220902092   
2020 Gu X, Ding J, Liu W, Yang X, Yao L, Gao X, Zhang M, Yang S, Wen J. Comparative genomics and association analysis identifies virulence genes of Cercospora sojina in soybean. Bmc Genomics. 21: 172. PMID 32075575 DOI: 10.1186/s12864-020-6581-5   
2020 Cui Y, Lv Y, Song M, Wang S, Hu H, Jahan N, Zhu B, Guo L. Genome sequence of Micromonospora terminaliae TMS7T, a new endophytic actinobacterium isolated from the medicinal plant Terminalia mucronata. Molecular Plant-Microbe Interactions : Mpmi. PMID 32003591 DOI: 10.1094/MPMI-12-19-0336-A   
2020 Ren J, Lee J, Na D. Recent advances in genetic engineering tools based on synthetic biology. Journal of Microbiology (Seoul, Korea). 58: 1-10. PMID 31898252 DOI: 10.1007/s12275-020-9334-x   
2020 Moisander PH, Ochiai M. Draft Genome Sequence of the Non-Microcystin-Producing Microcystis aeruginosa Strain KLA2, Isolated from a Freshwater Reservoir in Northern California, USA. Microbiology Resource Announcements. 9. PMID 31948955 DOI: 10.1128/MRA.01086-19   
2020 Waterhouse RM, Aganezov S, Anselmetti Y, Lee J, Ruzzante L, Reijnders MJMF, Feron R, Bérard S, George P, Hahn MW, Howell PI, Kamali M, Koren S, Lawson D, Maslen G, et al. Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies. Bmc Biology. 18: 1. PMID 31898513 DOI: 10.1186/s12915-019-0728-3   
2020 Park I, Song JH, Yang S, Moon BC. Comparative Analysis of Chloroplast Genomes and Molecular Marker Development for the Identification of Authentic Cimicifugae Rhizoma. Plants (Basel, Switzerland). 9. PMID 32012666 DOI: 10.3390/plants9020157   
2020 Wegrzyn JL, Falk T, Grau E, Buehler S, Ramnath R, Herndon N. Cyberinfrastructure and resources to enable an integrative approach to studying forest trees. Evolutionary Applications. 13: 228-241. PMID 31892954 DOI: 10.1111/eva.12860   
2020 Shabbir MZ, Rahman AU, Munir M. A comprehensive global perspective on phylogenomics and evolutionary dynamics of Small ruminant morbillivirus. Scientific Reports. 10: 17. PMID 31913305 DOI: 10.1038/s41598-019-54714-w   
2020 Li Q, Qi J, Qin X, Dou W, Lei T, Hu A, Jia R, Jiang G, Zou X, Long Q, Xu L, Peng A, Yao L, Chen S, He Y. CitGVD: a comprehensive database of citrus genomic variations. Horticulture Research. 7: 12. PMID 32025315 DOI: 10.1038/s41438-019-0234-3   
2020 Katsura Y, Nei M. The reproducibility of an inferred tree and the diploidization of gene segregation after genome duplication. Genome Biology and Evolution. PMID 31950994 DOI: 10.1093/gbe/evz272   
2020 Liu W, Cai Y, Zhang Q, Shu F, Chen L, Ma X, Bian Y. Subchromosome-Scale Nuclear and Complete Mitochondrial Genome Characteristics of . International Journal of Molecular Sciences. 21. PMID 31940908 DOI: 10.3390/ijms21020483   
2020 Liu PF, Wu Q. Probing 3D genome by CRISPR/Cas9. Yi Chuan = Hereditas. 42: 18-31. PMID 31956094 DOI: 10.16288/j.yczz.19-246   
2020 Boquete MT, Wagemaker NCAM, Vergeer P, Mounger J, Richards CL. Epigenetic Approaches in Non-Model Plants. Methods in Molecular Biology (Clifton, N.J.). 2093: 203-215. PMID 32088898 DOI: 10.1007/978-1-0716-0179-2_14   
2020 Van Quyen D, Gan HM, Lee YP, Nguyen DD, Nguyen TH, Tran XT, Nguyen VS, Khang DD, Austin CM. Improved genomic resources for the black tiger prawn (Penaeus monodon). Marine Genomics. 100751. PMID 32033920 DOI: 10.1016/j.margen.2020.100751   
2020 Kim BM, Lee YJ, Kim JH, Kim JH, Kang S, Jo E, Lee SJ, Lee JH, Chi YM, Park H. The Genome Assembly and Annotation of the Southern Elephant Seal a. Genes. 11. PMID 32028680 DOI: 10.3390/genes11020160   
2020 Zhu Y, Lu J, Zhao J, Zhang X, Yu HH, Velkov T, Li J. Complete genome sequence and genome-scale metabolic modelling of Acinetobacter baumannii type strain ATCC 19606. International Journal of Medical Microbiology : Ijmm. 151412. PMID 32081464 DOI: 10.1016/j.ijmm.2020.151412   
2020 Min B, Yoon H, Park J, Oh YL, Kong WS, Kim JG, Choi IG. Unusual genome expansion and transcription suppression in ectomycorrhizal Tricholoma matsutake by insertions of transposable elements. Plos One. 15: e0227923. PMID 31978083 DOI: 10.1371/journal.pone.0227923