Jeffrey S. Fillingham, Ph.D. - Publications

2003 York University, Toronto, Ontario, Canada 
Molecular Biology

19/36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Nabeel-Shah S, Ashraf K, Saettone A, Garg J, Derynck J, Lambert JP, Pearlman RE, Fillingham J. Nucleus-specific linker histones Hho1 and Mlh1 form distinct protein interactions during growth, starvation and development in Tetrahymena thermophila. Scientific Reports. 10: 168. PMID 31932604 DOI: 10.1038/S41598-019-56867-0  0.6
2019 Saettone A, Ponce M, Nabeel-Shah S, Fillingham J. RACS: rapid analysis of ChIP-Seq data for contig based genomes. Bmc Bioinformatics. 20: 533. PMID 31664892 DOI: 10.1186/s12859-019-3100-2  0.52
2019 Garg J, Saettone A, Nabeel-Shah S, Cadorin M, Ponce M, Marquez S, Pu S, Greenblatt J, Lambert JP, Pearlman RE, Fillingham J. The Med31 Conserved Component of the Divergent Mediator Complex in Tetrahymena thermophila Participates in Developmental Regulation. Current Biology : Cb. PMID 31280994 DOI: 10.1016/J.Cub.2019.06.052  0.6
2019 Saettone A, Nabeel-Shah S, Garg J, Lambert JP, Pearlman RE, Fillingham J. Functional Proteomics of Nuclear Proteins in A Review. Genes. 10. PMID 31052454 DOI: 10.3390/Genes10050333  0.6
2019 Ashraf K, Nabeel-Shah S, Garg J, Saettone A, Derynck J, Gingras AC, Lambert JP, Pearlman RE, Fillingham J. Proteomic analysis of histones H2A/H2B and variant Hv1 in Tetrahymena thermophila reveals an ancient network of chaperones. Molecular Biology and Evolution. PMID 30796450 DOI: 10.1093/Molbev/Msz039  0.6
2018 Dannah NS, Nabeel-Shah S, Kurat CF, Sabatinos SA, Fillingham J. Functional Analysis of Hif1 Histone Chaperone in . G3 (Bethesda, Md.). PMID 29661843 DOI: 10.1534/g3.118.200229  0.52
2018 Saettone A, Garg J, Lambert JP, Nabeel-Shah S, Ponce M, Burtch A, Thuppu Mudalige C, Gingras AC, Pearlman RE, Fillingham J. The bromodomain-containing protein Ibd1 links multiple chromatin-related protein complexes to highly expressed genes in Tetrahymena thermophila. Epigenetics & Chromatin. 11: 10. PMID 29523178 DOI: 10.1186/S13072-018-0180-6  0.6
2017 Akematsu T, Fukuda Y, Garg J, Fillingham JS, Pearlman RE, Loidl J. Post-meiotic DNA double-strand breaks occur in Tetrahymena, and require Topoisomerase II and Spo11. Elife. 6. PMID 28621664 DOI: 10.7554/Elife.26176  0.6
2014 Kurat CF, Lambert JP, Petschnigg J, Friesen H, Pawson T, Rosebrock A, Gingras AC, Fillingham J, Andrews B. Cell cycle-regulated oscillator coordinates core histone gene transcription through histone acetylation. Proceedings of the National Academy of Sciences of the United States of America. 111: 14124-9. PMID 25228766 DOI: 10.1073/Pnas.1414024111  0.52
2014 Nabeel-Shah S, Ashraf K, Pearlman RE, Fillingham J. Molecular evolution of NASP and conserved histone H3/H4 transport pathway. Bmc Evolutionary Biology. 14: 139. PMID 24951090 DOI: 10.1186/1471-2148-14-139  0.6
2013 Garg J, Lambert JP, Karsou A, Marquez S, Nabeel-Shah S, Bertucci V, Retnasothie DV, Radovani E, Pawson T, Gingras AC, Pearlman RE, Fillingham JS. Conserved Asf1-importin β physical interaction in growth and sexual development in the ciliate Tetrahymena thermophila. Journal of Proteomics. 94: 311-26. PMID 24120531 DOI: 10.1016/J.Jprot.2013.09.018  0.6
2011 Xiong J, Yuan D, Fillingham JS, Garg J, Lu X, Chang Y, Liu Y, Fu C, Pearlman RE, Miao W. Gene network landscape of the ciliate Tetrahymena thermophila. Plos One. 6: e20124. PMID 21637855 DOI: 10.1371/Journal.Pone.0020124  0.6
2010 Lambert JP, Fillingham J, Siahbazi M, Greenblatt J, Baetz K, Figeys D. Defining the budding yeast chromatin-associated interactome. Molecular Systems Biology. 6: 448. PMID 21179020 DOI: 10.1038/Msb.2010.104  0.52
2009 Fillingham J, Kainth P, Lambert JP, van Bakel H, Tsui K, Peña-Castillo L, Nislow C, Figeys D, Hughes TR, Greenblatt J, Andrews BJ. Two-color cell array screen reveals interdependent roles for histone chaperones and a chromatin boundary regulator in histone gene repression. Molecular Cell. 35: 340-51. PMID 19683497 DOI: 10.1016/J.Molcel.2009.06.023  0.52
2006 Fillingham JS, Garg J, Tsao N, Vythilingum N, Nishikawa T, Pearlman RE. Molecular genetic analysis of an SNF2/brahma-related gene in Tetrahymena thermophila suggests roles in growth and nuclear development. Eukaryotic Cell. 5: 1347-59. PMID 16896218 DOI: 10.1128/Ec.00149-06  0.6
2004 Fillingham JS, Pearlman RE. Role of micronucleus-limited DNA in programmed deletion of mse2.9 during macronuclear development of Tetrahymena thermophila. Eukaryotic Cell. 3: 288-301. PMID 15075259 DOI: 10.1128/Ec.3.2.288-301.2004  0.6
2004 Fillingham JS, Thing TA, Vythilingum N, Keuroghlian A, Bruno D, Golding GB, Pearlman RE. A non-long terminal repeat retrotransposon family is restricted to the germ line micronucleus of the ciliated protozoan Tetrahymena thermophila. Eukaryotic Cell. 3: 157-69. PMID 14871946 DOI: 10.1128/Ec.3.1.157-169.2004  0.6
2002 Fillingham JS, Chilcoat ND, Turkewitz AP, Orias E, Reith M, Pearlman RE. Analysis of expressed sequence tags (ESTs) in the ciliated protozoan Tetrahymena thermophila. The Journal of Eukaryotic Microbiology. 49: 99-107. PMID 12043965 DOI: 10.1111/J.1550-7408.2002.Tb00350.X  0.6
2001 Fillingham JS, Bruno D, Pearlman RE. Cis-acting requirements in flanking DNA for the programmed elimination of mse2.9: a common mechanism for deletion of internal eliminated sequences from the developing macronucleus of Tetrahymena thermophila. Nucleic Acids Research. 29: 488-98. PMID 11139619 DOI: 10.1093/Nar/29.2.488  0.6
Low-probability matches
2014 Kim HS, Mukhopadhyay R, Rothbart SB, Silva AC, Vanoosthuyse V, Radovani E, Kislinger T, Roguev A, Ryan CJ, Xu J, Jahari H, Hardwick KG, Greenblatt JF, Krogan NJ, Fillingham JS, et al. Identification of a BET family bromodomain/casein kinase II/TAF-containing complex as a regulator of mitotic condensin function. Cell Reports. 6: 892-905. PMID 24565511 DOI: 10.1016/J.Celrep.2014.01.029  0.28
2014 Yee C, Florica R, Fillingham J, Killeen MT. ENU-3 functions in an UNC-6/netrin dependent pathway parallel to UNC-40/DCC/frazzled for outgrowth and guidance of the touch receptor neurons in C. elegans Developmental Dynamics. 243: 459-467. PMID 24123761 DOI: 10.1002/dvdy.24063  0.28
2014 Kurat CF, Recht J, Radovani E, Durbic T, Andrews B, Fillingham J. Regulation of histone gene transcription in yeast. Cellular and Molecular Life Sciences : Cmls. 71: 599-613. PMID 23974242 DOI: 10.1007/S00018-013-1443-9  0.28
2013 Radovani E, Cadorin M, Shams T, El-Rass S, Karsou AR, Kim HS, Kurat CF, Keogh MC, Greenblatt JF, Fillingham JS. The carboxyl terminus of Rtt109 functions in chaperone control of histone acetylation. Eukaryotic Cell. 12: 654-64. PMID 23457193 DOI: 10.1128/Ec.00291-12  0.28
2012 Silva AC, Xu X, Kim HS, Fillingham J, Kislinger T, Mennella TA, Keogh MC. The replication-independent histone H3-H4 chaperones HIR, ASF1, and RTT106 co-operate to maintain promoter fidelity. The Journal of Biological Chemistry. 287: 1709-18. PMID 22128187 DOI: 10.1074/Jbc.M111.316489  0.28
2010 Campos EI, Fillingham J, Li G, Zheng H, Voigt P, Kuo WH, Seepany H, Gao Z, Day LA, Greenblatt JF, Reinberg D. The program for processing newly synthesized histones H3.1 and H4. Nature Structural & Molecular Biology. 17: 1343-51. PMID 20953179 DOI: 10.1038/Nsmb.1911  0.28
2009 Kim HS, Vanoosthuyse V, Fillingham J, Roguev A, Watt S, Kislinger T, Treyer A, Carpenter LR, Bennett CS, Emili A, Greenblatt JF, Hardwick KG, Krogan NJ, Bähler J, Keogh MC. An acetylated form of histone H2A.Z regulates chromosome architecture in Schizosaccharomyces pombe. Nature Structural & Molecular Biology. 16: 1286-93. PMID 19915592 DOI: 10.1038/Nsmb.1688  0.28
2009 Zhou K, Kuo WH, Fillingham J, Greenblatt JF. Control of transcriptional elongation and cotranscriptional histone modification by the yeast BUR kinase substrate Spt5. Proceedings of the National Academy of Sciences of the United States of America. 106: 6956-61. PMID 19365074 DOI: 10.1073/pnas.0806302106  0.28
2008 Fillingham J, Greenblatt JF. A histone code for chromatin assembly. Cell. 134: 206-8. PMID 18662534 DOI: 10.1016/j.cell.2008.07.007  0.28
2008 Fillingham J, Recht J, Silva AC, Suter B, Emili A, Stagljar I, Krogan NJ, Allis CD, Keogh MC, Greenblatt JF. Chaperone control of the activity and specificity of the histone H3 acetyltransferase Rtt109. Molecular and Cellular Biology. 28: 4342-53. PMID 18458063 DOI: 10.1128/Mcb.00182-08  0.28
2007 Suter B, Fetchko MJ, Imhof R, Graham CI, Stoffel-Studer I, Zbinden C, Raghavan M, Lopez L, Beneti L, Hort J, Fillingham J, Greenblatt JF, Giaever G, Nislow C, Stagljar I. Examining protein protein interactions using endogenously tagged yeast arrays: the cross-and-capture system. Genome Research. 17: 1774-82. PMID 17989249 DOI: 10.1101/Gr.6667007  0.28
2007 Collins SR, Miller KM, Maas NL, Roguev A, Fillingham J, Chu CS, Schuldiner M, Gebbia M, Recht J, Shales M, Ding H, Xu H, Han J, Ingvarsdottir K, Cheng B, et al. Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map. Nature. 446: 806-10. PMID 17314980 DOI: 10.1038/Nature05649  0.28
2006 Fillingham J, Keogh MC, Krogan NJ. GammaH2AX and its role in DNA double-strand break repair. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 84: 568-77. PMID 16936829 DOI: 10.1139/o06-072  0.28
2006 Keogh MC, Kim JA, Downey M, Fillingham J, Chowdhury D, Harrison JC, Onishi M, Datta N, Galicia S, Emili A, Lieberman J, Shen X, Buratowski S, Haber JE, Durocher D, et al. A phosphatase complex that dephosphorylates gammaH2AX regulates DNA damage checkpoint recovery. Nature. 439: 497-501. PMID 16299494 DOI: 10.1038/Nature04384  0.28
2004 Krogan NJ, Lam MH, Fillingham J, Keogh MC, Gebbia M, Li J, Datta N, Cagney G, Buratowski S, Emili A, Greenblatt JF. Proteasome involvement in the repair of DNA double-strand breaks. Molecular Cell. 16: 1027-34. PMID 15610744 DOI: 10.1016/J.Molcel.2004.11.033  0.28
2020 Wahab S, Saettone A, Nabeel-Shah S, Dannah N, Fillingham J. Exploring the Histone Acetylation Cycle in the Protozoan Model . Frontiers in Cell and Developmental Biology. 8: 509. PMID 32695779 DOI: 10.3389/fcell.2020.00509  0.01
2006 Keogh M, Kim J, Downey M, Fillingham J, Chowdhury D, Harrison JC, Onishi M, Datta N, Galicia S, Emili A, Lieberman J, Shen X, Buratowski S, Haber JE, Durocher D, et al. Erratum: Corrigendum: A phosphatase complex that dephosphorylates γH2AX regulates DNA damage checkpoint recovery Nature. 441: 120-120. DOI: 10.1038/Nature04772  0.01
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