Eric C. Olivares, Ph.D. - Related publications

2003 Stanford University, Palo Alto, CA 
Genetics, Molecular Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Huang G, Kawabe Y, Shirakawa K, Akiyama T, Kamihira M. Novel transgenic Chlamydomonas reinhardtii strain with retargetable genomic transgene integration using Cre-loxP system. Journal of Bioscience and Bioengineering. PMID 34420898 DOI: 10.1016/j.jbiosc.2021.07.006   
2021 Rud D, Marjoram P, Siegmund K, Shibata D. Functional human genes typically exhibit epigenetic conservation. Plos One. 16: e0253250. PMID 34520456 DOI: 10.1371/journal.pone.0253250   
2021 Carver J, Kern M, Ko P, Greenwood-Goodwin M, Yu XC, Duan D, Tang D, Misaghi S, Auslaender S, Haley B, Yuk IH, Shen A. A Ribonucleoprotein-based Decaplex CRISPR/Cas9 Knockout Strategy for CHO Host Engineering. Biotechnology Progress. e3212. PMID 34538022 DOI: 10.1002/btpr.3212   
2021 Graßhoff H, Müller-Fielitz H, Dogbevia GK, Körbelin J, Bannach J, Vahldieck CM, Kusche-Vihrog K, Jöhren O, Müller OJ, Nogueiras R, Prevot V, Schwaninger M. Short regulatory DNA sequences to target brain endothelial cells for gene therapy. Journal of Cerebral Blood Flow and Metabolism : Official Journal of the International Society of Cerebral Blood Flow and Metabolism. 271678X211039617. PMID 34427142 DOI: 10.1177/0271678X211039617   
2021 Kumar SRP, Xie J, Hu S, Ko J, Huang Q, Brown HC, Srivastava A, Markusic DM, Doering CB, Spencer HT, Srivastava A, Gao G, Herzog RW. Coagulation factor IX gene transfer to non-human primates using engineered AAV3 capsid and hepatic optimized expression cassette. Molecular Therapy. Methods & Clinical Development. 23: 98-107. PMID 34631930 DOI: 10.1016/j.omtm.2021.08.001   
2021 Liang Y, Wang M, Liu Y, Wang C, Takahashi K, Naruse K. Meta-Analysis-Assisted Detection of Gravity-Sensitive Genes in Human Vascular Endothelial Cells. Frontiers in Cell and Developmental Biology. 9: 689662. PMID 34422812 DOI: 10.3389/fcell.2021.689662   
2021 Mwapagha LM, Chibanga V, Shipanga H, Parker MI. New insights from Whole Genome Sequencing: BCLAF1 deletion as a structural variant that predisposes cells towards cellular transformation. Oncology Reports. 46. PMID 34490482 DOI: 10.3892/or.2021.8180   
2021 Xie CD, Wang B, Shen ZJ, Yao WY, Ao H, Li B, Pei Y, Zhou R. Validation of the Reference Genes for the Gene Expression Studies in Different Cell Lines of Pig. Biomed Research International. 2021: 5364190. PMID 34458368 DOI: 10.1155/2021/5364190   
2021 Gandhi S, Li Y, Tang W, Christensen JB, Urrutia HA, Vieceli FM, Piacentino ML, Bronner ME. A single-plasmid approach for genome editing coupled with long-term lineage analysis in chick embryos. Development (Cambridge, England). 148. PMID 34437692 DOI: 10.1242/dev.193565   
2021 Luo S, Li Z, Dai X, Zhang R, Liang Z, Li W, Zeng M, Su J, Wang J, Liang X, Wu Y, Liang D. CRISPR/Cas9-Mediated Genetic Correction in a Mouse Model of Hemophilia A. Frontiers in Cell and Developmental Biology. 9: 672564. PMID 34485274 DOI: 10.3389/fcell.2021.672564   
2021 Lambert JT, Su-Feher L, Cichewicz K, Warren TL, Zdilar I, Wang Y, Lim KJ, Haigh JL, Morse SJ, Canales CP, Stradleigh TW, Castillo Palacios E, Haghani V, Moss SD, Parolini H, et al. Parallel functional testing identifies enhancers active in early postnatal mouse brain. Elife. 10. PMID 34605404 DOI: 10.7554/eLife.69479   
2021 Chen T, Peng X, Qin J, Qin X, Wu M, Huang J, Huang X, Wei D, Wang L, Jin G. [In silico cloning, expression and bioinformatics analysis of NtODB from common tobacco]. Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology. 37: 2836-2844. PMID 34472301 DOI: 10.13345/j.cjb.200669   
2021 Yan F, Wang J, Wu X, Lu XT, Wang Y, Cheng W, Cui XP, Jiang F, Guo XS. Nitrosative stress induces downregulation of ribosomal protein genes via MYCT1 in vascular smooth muscle cells. European Review For Medical and Pharmacological Sciences. 25: 5653-5663. PMID 34604957 DOI: 10.26355/eurrev_202109_26784   
2021 Yu X, Han Y, Liu S, Jiang W, Song Y, Tong J, Qiao T, Lv Z, Li D. Analysis of Genetic Alterations Related to DNA Methylation in Testicular Germ Cell Tumors Based on Data Mining. Cytogenetic and Genome Research. 1-12. PMID 34433169 DOI: 10.1159/000516385   
2021 Yang GH, Fontaine DA, Lodh S, Blumer JT, Roopra A, Davis DB. TCF19 Impacts a Network of Inflammatory and DNA Damage Response Genes in the Pancreatic β-Cell. Metabolites. 11. PMID 34436454 DOI: 10.3390/metabo11080513   
2021 Ubina T, Vahedi-Hunter T, Agnew-Svoboda W, Wong W, Gupta A, Santhakumar V, Riccomagno MM. ExBoX: a simple Boolean exclusion strategy to drive expression in neurons. Journal of Cell Science. PMID 34515305 DOI: 10.1242/jcs.257212   
2021 Markus BM, Boydston EA, Lourido S. CRISPR-Mediated Transcriptional Repression in Toxoplasma gondii. Msphere. e0047421. PMID 34643425 DOI: 10.1128/mSphere.00474-21   
2021 Galfrè SG, Morandin F, Pietrosanto M, Cremisi F, Helmer-Citterich M. COTAN: scRNA-seq data analysis based on gene co-expression. Nar Genomics and Bioinformatics. 3: lqab072. PMID 34396096 DOI: 10.1093/nargab/lqab072   
2021 Zinani OQH, Keseroğlu K, Özbudak EM. Regulatory mechanisms ensuring coordinated expression of functionally related genes. Trends in Genetics : Tig. PMID 34376301 DOI: 10.1016/j.tig.2021.07.008   
2021 Ali H, Bhange D, Mehta K, Gohil Y, Prajapati HK, Byrareddy SN, Buch S, Ranga U. An emerging and variant viral promoter of HIV-1 subtype C exhibits low-level gene expression noise. Retrovirology. 18: 27. PMID 34538278 DOI: 10.1186/s12977-021-00572-2   
2021 Dai Z, Li R, Hou Y, Li Q, Zhao K, Li T, Li MJ, Wu X. Inducible CRISPRa screen identifies putative enhancers. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 34531148 DOI: 10.1016/j.jgg.2021.06.012   
2021 Jeong SG, Ryu YC, Hwang BH. Synergistic gene delivery by self-assembled nanocomplexes using fusion peptide and calcium phosphate. Journal of Controlled Release : Official Journal of the Controlled Release Society. PMID 34425165 DOI: 10.1016/j.jconrel.2021.08.034   
2021 Grieshaber NA, Runac J, Turner S, Dean M, Appa C, Omsland A, Grieshaber SS. The sRNA Regulated Protein DdbA Is Involved in Development and Maintenance of the Chlamydia trachomatis EB Cell Form. Frontiers in Cellular and Infection Microbiology. 11: 692224. PMID 34368013 DOI: 10.3389/fcimb.2021.692224   
2021 Shi K, Zhu X, Wu J, Chen Y, Zhang J, Sun X. Centromere protein E as a novel biomarker and potential therapeutic target for retinoblastoma. Bioengineered. 12: 5950-5970. PMID 34482803 DOI: 10.1080/21655979.2021.1972080   
2021 Wang B, Gong S, Shao W, Han L, Li Z, Zhang Z, Zheng Y, Ouyang F, Ma Y, Xu W, Feng Y. Comprehensive analysis of pivotal biomarkers, immune cell infiltration and therapeutic drugs for steroid-induced osteonecrosis of the femoral head. Bioengineered. 12: 5971-5984. PMID 34488536 DOI: 10.1080/21655979.2021.1972081   
2021 Ran G, Feng XL, Xie YL, Zheng QY, Guo PP, Yang M, Feng YL, Ling C, Zhu LQ, Zhong C. The use of miR122 and its target sequence in adeno-associated virus-mediated trichosanthin gene therapy. Journal of Integrative Medicine. PMID 34538767 DOI: 10.1016/j.joim.2021.09.004   
2021 Briggs P, Hunter AL, Yang SH, Sharrocks AD, Iqbal M. PEGS: An efficient tool for gene set enrichment within defined sets of genomic intervals. F1000research. 10: 570. PMID 34504687 DOI: 10.12688/f1000research.53926.1   
2021 Chae K, Valentin C, Jakes E, Myles KM, Adelman ZN. Novel synthetic 3'-untranslated regions for controlling transgene expression in transgenic mosquitoes. Rna Biology. 1-9. PMID 34464234 DOI: 10.1080/15476286.2021.1971440   
2021 Xu X, Chemparathy A, Zeng L, Kempton HR, Shang S, Nakamura M, Qi LS. Engineered miniature CRISPR-Cas system for mammalian genome regulation and editing. Molecular Cell. PMID 34480847 DOI: 10.1016/j.molcel.2021.08.008   
2021 Domm JM, Wootton SK, Medin JA, West ML. Gene therapy for Fabry disease: Progress, challenges, and outlooks on gene-editing. Molecular Genetics and Metabolism. PMID 34340879 DOI: 10.1016/j.ymgme.2021.07.006   
2021 Winckers LA, Evelo CT, Willighagen EL, Kutmon M. Investigating the Molecular Processes behind the Cell-Specific Toxicity Response to Titanium Dioxide Nanobelts. International Journal of Molecular Sciences. 22. PMID 34502343 DOI: 10.3390/ijms22179432   
2021 Reiter T, Montpetit R, Runnebaum R, Brown CT, Montpetit B. Charting Shifts in Saccharomyces cerevisiae Gene Expression across Asynchronous Time Trajectories with Diffusion Maps. Mbio. e0234521. PMID 34607457 DOI: 10.1128/mBio.02345-21   
2021 Akella S, Ma X, Bacova R, Harmer ZP, Kolackova M, Wen X, Wright DA, Spalding MH, Weeks DP, Cerutti H. Co-targeting strategy for precise, scarless gene editing with CRISPR/Cas9 and donor ssODNs in Chlamydomonas. Plant Physiology. PMID 34618092 DOI: 10.1093/plphys/kiab418   
2021 Zhu W, Cheng Y, Wang Z, Ji L, Ma J, Yan Y, Wang H, Sun J. The identification of a shorter cyclic GMP-AMP synthase gene from chickens and bioinformatics analysis of its potential signaling in IFN regulation. Developmental and Comparative Immunology. 104266. PMID 34562530 DOI: 10.1016/j.dci.2021.104266   
2021 Holland CH, Ramirez Flores RO, Myllys M, Hassan R, Edlund K, Hofmann U, Marchan R, Cadenas C, Reinders J, Hoehme S, Seddek AL, Dooley S, Keitel V, Godoy P, Begher-Tibbe B, et al. Transcriptomic Cross-Species Analysis of Chronic Liver Disease Reveals Consistent Regulation Between Humans and Mice. Hepatology Communications. PMID 34558834 DOI: 10.1002/hep4.1797   
2021 Yang J, Li Q, Du W, Yao Y, Shen G, Jiang W, Pang Y. Genome-Wide Analysis of Glycoside Hydrolase Family 35 Genes and Their Potential Roles in Cell Wall Development in . Plants (Basel, Switzerland). 10. PMID 34451684 DOI: 10.3390/plants10081639   
2021 Chun KH. Discovery of Cellular RhoA Functions by the Integrated Application of Gene Set Enrichment Analysis. Biomolecules & Therapeutics. PMID 34429388 DOI: 10.4062/biomolther.2021.075   
2021 Xie Z, Rui W, Yuan Y, Song X, Liu X, Gong X, Bao J, Zhang S, Shahrokh K, Tao S. Analysis of Gene Family and Its Function on Cell Lignification in Pears (). Plants (Basel, Switzerland). 10. PMID 34579408 DOI: 10.3390/plants10091874   
2021 Zuo Z, Sun X, Cao L, Zhang S, Yu J, Xu X, Xu Z, Liu G, Qu C. Genome-wide identification of genes in and their expression under different nitrogen treatments. Physiology and Molecular Biology of Plants : An International Journal of Functional Plant Biology. 27: 1919-1931. PMID 34616114 DOI: 10.1007/s12298-021-01055-6   
2021 Grose C, Putman Z, Esposito D. A review of alternative promoters for optimal recombinant protein expression in baculovirus-infected insect cells. Protein Expression and Purification. 186: 105924. PMID 34087362 DOI: 10.1016/j.pep.2021.105924   
2021 Wu C, Zhu J, King A, Tong X, Lu Q, Park JY, Wang L, Gao G, Deng HW, Yang Y, Knudsen KE, Rebbeck TR, Long J, Zheng W, Pan W, et al. Novel strategy for disease risk prediction incorporating predicted gene expression and DNA methylation data: a multi-phased study of prostate cancer. Cancer Communications (London, England). PMID 34520132 DOI: 10.1002/cac2.12205   
2021 Kumar S, Ruggles A, Logan S, Mazarakis A, Tyson T, Bates M, Grosse C, Reed D, Li Z, Grimwood J, Schmutz J, Saski C. Comparative Transcriptomics of Non-Embryogenic and Embryogenic Callus in Semi-Recalcitrant and Non-Recalcitrant Upland Cotton Lines. Plants (Basel, Switzerland). 10. PMID 34579308 DOI: 10.3390/plants10091775   
2021 Chien CS, Chien Y, Lin YY, Tsai PH, Chou SJ, Yarmishyn AA, Rastegari E, Wang TX, Leu HB, Yang YP, Wang ML, Jheng YC, Lai HIAM, Ching LJ, Huo TI, et al. Dual DNA Transfection Using 1,6-Hexanedithiol-Conjugated Maleimide-Functionalized PU-PEI For Gene Correction in a Patient iPSC-Derived Fabry Cardiomyopathy Model. Frontiers in Cell and Developmental Biology. 9: 634190. PMID 34422789 DOI: 10.3389/fcell.2021.634190   
2021 Thomas AL, Marsman J, Antony J, Schierding W, O'Sullivan JM, Horsfield JA. Transcriptional Regulation of : An Informatics Analysis. Genes. 12. PMID 34440349 DOI: 10.3390/genes12081175   
2021 Goszczynski DE, Tinetti PS, Choi YH, Hinrichs K, Ross PJ. Genome activation in equine in vitro-produced embryos. Biology of Reproduction. PMID 34515744 DOI: 10.1093/biolre/ioab173   
2021 Efremenko A, Balbuena P, Clewell RA, Black M, Pluta L, Andersen ME, Gentry PR, Yager JW, Clewell HJ. Time-dependent genomic response in primary human uroepithelial cells exposed to arsenite for up to 60 days. Toxicology. 461: 152893. PMID 34425169 DOI: 10.1016/j.tox.2021.152893   
2021 Challa AK, Stanford D, Allen A, Rasmussen L, Amanor FK, Raju SV. Validation of gene editing efficiency with CRISPR-Cas9 system directly in rat zygotes using electroporation mediated delivery and embryo culture. Methodsx. 8: 101419. PMID 34430314 DOI: 10.1016/j.mex.2021.101419   
2021 Hu L, Guo S, Yan X, Zhang T, Xiang J, Fei Q. Exploration of an Efficient Electroporation System for Heterologous Gene Expression in the Genome of Methanotroph. Frontiers in Microbiology. 12: 717033. PMID 34421878 DOI: 10.3389/fmicb.2021.717033   
2021 Metasuk A, Kitiyanant N, Chetsawang B. An expression system of channelrhodopsin-2 driven by a minimal Arc/Arg3.1 promoter and Tet system was developed in human neuroblastoma cells. Plasmid. 117: 102597. PMID 34411655 DOI: 10.1016/j.plasmid.2021.102597   
2021 Zhong XL, Qian BP, Huang JC, Zhao SZ, Li Y, Qiu Y. Low expression of TCP1 (T-Complex 1) and PSMC1 (Proteasome 26S subunit, ATPase 1) in heterotopic ossification during ankylosing spondylitis. Bioengineered. 12: 7459-7469. PMID 34612770 DOI: 10.1080/21655979.2021.1975981