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Guramrit Singh, Ph.D. - Publications

Affiliations: 
2007 University of Colorado, Boulder, Boulder, CO, United States 
Area:
Molecular Biology, Cell Biology
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31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Embree CM, Alhasan RA, Singh G. Features and factors that dictate if terminating ribosomes cause or counteract nonsense-mediated mRNA decay. The Journal of Biological Chemistry. 102592. PMID 36244451 DOI: 10.1016/j.jbc.2022.102592  0.494
2022 Yi Z, Arvola RM, Myers S, Dilsavor CN, Abu Alhasan R, Carter BN, Patton RD, Bundschuh R, Singh G. Mammalian UPF3A and UPF3B can activate nonsense-mediated mRNA decay independently of their exon junction complex binding. The Embo Journal. e109202. PMID 35451102 DOI: 10.15252/embj.2021109202  0.437
2021 Yi Z, Singh G. RIPiT-Seq: A tandem immunoprecipitation approach to reveal global binding landscape of multisubunit ribonucleoproteins. Methods in Enzymology. 655: 401-425. PMID 34183131 DOI: 10.1016/bs.mie.2021.03.019  0.342
2020 Yi Z, Sanjeev M, Singh G. The Branched Nature of the Nonsense-Mediated mRNA Decay Pathway. Trends in Genetics : Tig. PMID 33008628 DOI: 10.1016/j.tig.2020.08.010  0.433
2020 Papaioannou D, Petri A, Dovey OM, Terreri S, Wang E, Collins FA, Woodward LA, Walker AE, Nicolet D, Pepe F, Kumchala P, Bill M, Walker CJ, Karunasiri M, Mrózek K, ... ... Singh G, et al. Author Correction: The long non-coding RNA HOXB-AS3 regulates ribosomal RNA transcription in NPM1-mutated acute myeloid leukemia. Nature Communications. 11: 3878. PMID 32728019 DOI: 10.1038/S41467-020-17746-9  0.399
2020 Gangras P, Gallagher TL, Parthun MA, Yi Z, Patton RD, Tietz KT, Deans NC, Bundschuh R, Amacher SL, Singh G. Zebrafish rbm8a and magoh mutants reveal EJC developmental functions and new 3'UTR intron-containing NMD targets. Plos Genetics. 16: e1008830. PMID 32502192 DOI: 10.1371/Journal.Pgen.1008830  0.528
2020 Patton RD, Sanjeev M, Woodward LA, Mabin JW, Bundschuh R, Singh G. Chemical crosslinking enhances RNA immunoprecipitation for efficient identification of binding sites of proteins that photo-crosslink poorly with RNA. Rna (New York, N.Y.). PMID 32467309 DOI: 10.1261/Rna.074856.120  0.451
2020 Papaioannou D, Petri A, Dovey OM, Terreri S, Wang E, Collins FA, Woodward LA, Walker AE, Nicolet D, Pepe F, Kumchala P, Bill M, Walker CJ, Karunasiri M, Mrózek K, ... ... Singh G, et al. Publisher Correction: The long non-coding RNA HOXB-AS3 regulates ribosomal RNA transcription in NPM1-mutated acute myeloid leukemia. Nature Communications. 11: 204. PMID 31911614 DOI: 10.1038/S41467-019-13969-7  0.401
2020 Singh G, Yi Z. Connections between mRNP Composition and mRNA Fate The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.00219  0.434
2019 Papaioannou D, Petri A, Dovey OM, Terreri S, Wang E, Collins FA, Woodward LA, Walker AE, Nicolet D, Pepe F, Kumchala P, Bill M, Walker CJ, Karunasiri M, Mrózek K, ... ... Singh G, et al. The long non-coding RNA HOXB-AS3 regulates ribosomal RNA transcription in NPM1-mutated acute myeloid leukemia. Nature Communications. 10: 5351. PMID 31767858 DOI: 10.1038/S41467-019-13259-2  0.477
2019 Woodward L, Gangras P, Singh G. Identification of Footprints of RNA:Protein Complexes via RNA Immunoprecipitation in Tandem Followed by Sequencing (RIPiT-Seq). Journal of Visualized Experiments : Jove. PMID 31355789 DOI: 10.3791/59913  0.461
2019 Papaioannou D, Buisson R, Petri A, Walker A, Bill M, Pepe F, Nicolet D, Woodward LA, Mrózek K, Karunasiri M, Behbehani GK, Cocucci E, Singh G, Kauppinen S, Dorrance AM, et al. CircPCMTD1: A Protein-Coding Circular RNA That Regulates DNA Synthesis in Leukemic Myeloblasts Blood. 134: 640-640. DOI: 10.1182/Blood-2019-126223  0.439
2018 Mabin JW, Woodward LA, Patton RD, Yi Z, Jia M, Wysocki VH, Bundschuh R, Singh G. The Exon Junction Complex Undergoes a Compositional Switch that Alters mRNP Structure and Nonsense-Mediated mRNA Decay Activity. Cell Reports. PMID 30466796 DOI: 10.1016/J.Celrep.2018.11.046  0.542
2018 Gangras P, Dayeh DM, Mabin JW, Nakanishi K, Singh G. Cloning and Identification of Recombinant Argonaute-Bound Small RNAs Using Next-Generation Sequencing. Methods in Molecular Biology (Clifton, N.J.). 1680: 1-28. PMID 29030838 DOI: 10.1007/978-1-4939-7339-2_1  0.421
2018 Papaioannou D, Petri A, Terreri S, Thrue CA, Nicolet D, Collins FA, Woodward LA, Kumchala P, Karunasiri M, Pepe F, Bill M, Zitzer N, Singh G, Kaupinnen S, Bloomfield CD, et al. Abstract 519: The long non-coding RNA (lncRNA) HOXB-AS3 regulates transcription of ribosomal RNA (rRNA) in NPM1-mutated (NPM1mut) acute myeloid leukemia (AML) Cancer Research. 78: 519-519. DOI: 10.1158/1538-7445.Am2018-519  0.452
2017 Cenik C, Chua HN, Singh G, Akef A, Snyder MP, Palazzo AF, Moore MJ, Roth FP. A common class of transcripts with 5'-intron depletion, distinct early coding sequence features, and N(1)-methyladenosine modification. Rna (New York, N.Y.). 23: 270-283. PMID 27994090 DOI: 10.1261/Rna.059105.116  0.417
2016 Woodward LA, Mabin JW, Gangras P, Singh G. The exon junction complex: a lifelong guardian of mRNA fate. Wiley Interdisciplinary Reviews. Rna. PMID 28008720 DOI: 10.1002/Wrna.1411  0.589
2016 Hing ZA, Blachly JS, Goettl VM, Singh G, Byrd JC, Lapalombella R. Exploring the Role of the Recurrent Exportin 1 (XPO1/CRM1) Mutations E571G and E571K in Chronic Lymphocytic Leukemia Blood. 128: 972-972. DOI: 10.1182/Blood.V128.22.972.972  0.44
2016 Papaioannou D, Petri A, Thrue CA, Volinia S, Kroll K, Pearlly Y, Bundschuh R, Singh G, Kauppinen S, Bloomfield CD, Dorrance A, Garzon R. HOXB-AS3 Regulates Cell Cycle Progression and Interacts with the Drosophila Splicing Human Behavior (DSHB) Complex in NPM1-Mutated Acute Myeloid Leukemia Blood. 128: 1514-1514. DOI: 10.1182/Blood.V128.22.1514.1514  0.464
2015 Singh G, Pratt G, Yeo GW, Moore MJ. The Clothes Make the mRNA: Past and Present Trends in mRNP Fashion. Annual Review of Biochemistry. 84: 325-54. PMID 25784054 DOI: 10.1146/Annurev-Biochem-080111-092106  0.603
2014 Ricci EP, Kucukural A, Cenik C, Mercier BC, Singh G, Heyer EE, Ashar-Patel A, Peng L, Moore MJ. Staufen1 senses overall transcript secondary structure to regulate translation. Nature Structural & Molecular Biology. 21: 26-35. PMID 24336223 DOI: 10.1038/Nsmb.2739  0.54
2014 Singh G, Ricci EP, Moore MJ. RIPiT-Seq: a high-throughput approach for footprinting RNA:protein complexes. Methods (San Diego, Calif.). 65: 320-32. PMID 24096052 DOI: 10.1016/J.Ymeth.2013.09.013  0.445
2013 Kucukural A, Özadam H, Singh G, Moore MJ, Cenik C. ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq. Bioinformatics (Oxford, England). 29: 2485-6. PMID 23929032 DOI: 10.1093/Bioinformatics/Btt428  0.381
2012 Singh G, Kucukural A, Cenik C, Leszyk JD, Shaffer SA, Weng Z, Moore MJ. The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus. Cell. 151: 750-64. PMID 23084401 DOI: 10.1016/J.Cell.2012.10.007  0.589
2011 Morello LG, Coltri PP, Quaresma AJ, Simabuco FM, Silva TC, Singh G, Nickerson JA, Oliveira CC, Moore MJ, Zanchin NI. The human nucleolar protein FTSJ3 associates with NIP7 and functions in pre-rRNA processing. Plos One. 6: e29174. PMID 22195017 DOI: 10.1371/Journal.Pone.0029174  0.459
2010 Franks TM, Singh G, Lykke-Andersen J. Upf1 ATPase-dependent mRNP disassembly is required for completion of nonsense- mediated mRNA decay. Cell. 143: 938-50. PMID 21145460 DOI: 10.1016/J.Cell.2010.11.043  0.691
2008 Singh G, Rebbapragada I, Lykke-Andersen J. A competition between stimulators and antagonists of Upf complex recruitment governs human nonsense-mediated mRNA decay. Plos Biology. 6: e111. PMID 18447585 DOI: 10.1371/Journal.Pbio.0060111  0.686
2007 Singh G, Jakob S, Kleedehn MG, Lykke-Andersen J. Communication with the exon-junction complex and activation of nonsense-mediated decay by human Upf proteins occur in the cytoplasm. Molecular Cell. 27: 780-92. PMID 17803942 DOI: 10.1016/J.Molcel.2007.06.030  0.678
2007 Mondal K, Dastidar AG, Singh G, Madhusudhanan S, Gande SL, VijayRaghavan K, Varadarajan R. Design and isolation of temperature-sensitive mutants of Gal4 in yeast and Drosophila. Journal of Molecular Biology. 370: 939-50. PMID 17553522 DOI: 10.1016/J.Jmb.2007.05.035  0.33
2004 Chakshusmathi G, Mondal K, Lakshmi GS, Singh G, Roy A, Ch RB, Madhusudhanan S, Varadarajan R. Design of temperature-sensitive mutants solely from amino acid sequence. Proceedings of the National Academy of Sciences of the United States of America. 101: 7925-30. PMID 15148363 DOI: 10.1073/Pnas.0402222101  0.308
2003 Singh G, Lykke-Andersen J. New insights into the formation of active nonsense-mediated decay complexes. Trends in Biochemical Sciences. 28: 464-6. PMID 13678954 DOI: 10.1016/S0968-0004(03)00176-2  0.684
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