Edward S. Buckler, PhD - Publications

Affiliations: 
2003- Plant Breeding and Genetics Cornell University, Ithaca, NY, United States 
Area:
Genetics, Bioinformatics Biology, Molecular Biology

130 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Oren E, Tzuri G, Vexler L, Dafna A, Meir A, Faigenboim A, Kenigswald M, Portnoy V, Schaffer AA, Levi A, Buckler ES, Katzir N, Burger J, Tadmor Y, Gur A. The multi-allelic APRR2 gene is associated with fruit pigment accumulation in melon and watermelon. Journal of Experimental Botany. PMID 31175368 DOI: 10.1093/jxb/erz182  1
2019 Baseggio M, Murray M, Magallanes-Lundback M, Kaczmar N, Chamness J, Buckler ES, Smith ME, DellaPenna D, Tracy WF, Gore MA. Genome-Wide Association and Genomic Prediction Models of Tocochromanols in Fresh Sweet Corn Kernels. The Plant Genome. 12. PMID 30951088 DOI: 10.3835/plantgenome2018.06.0038  1
2019 Zhou S, Kremling K, Bandillo N, Richter A, Zhang YK, Ahern KR, Artyukhin AB, Hui JX, Younkin GC, Schroeder FC, Buckler ES, Jander G. Metabolome-scale genome-wide association studies reveal chemical diversity and genetic control of maize specialized metabolites. The Plant Cell. PMID 30923231 DOI: 10.1105/tpc.18.00772  1
2019 Mejía-Guerra MK, Buckler ES. A k-mer grammar analysis to uncover maize regulatory architecture. Bmc Plant Biology. 19: 103. PMID 30876396 DOI: 10.1186/s12870-019-1693-2  0.16
2019 Yang CJ, Samayoa LF, Bradbury PJ, Olukolu BA, Xue W, York AM, Tuholski MR, Wang W, Daskalska LL, Neumeyer MA, Sanchez-Gonzalez JJ, Romay MC, Glaubitz JC, Sun Q, Buckler ES, et al. The genetic architecture of teosinte catalyzed and constrained maize domestication. Proceedings of the National Academy of Sciences of the United States of America. PMID 30842282 DOI: 10.1073/pnas.1820997116  1
2019 Washburn JD, Mejia-Guerra MK, Ramstein G, Kremling KA, Valluru R, Buckler ES, Wang H. Evolutionarily informed deep learning methods for predicting relative transcript abundance from DNA sequence. Proceedings of the National Academy of Sciences of the United States of America. PMID 30842277 DOI: 10.1073/pnas.1814551116  1
2019 Valluru R, Gazave EE, Fernandes SB, Ferguson JN, Lozano R, Hirannaiah P, Zuo T, Brown PJ, Leakey ADB, Gore MA, Buckler ES, Bandillo N. Deleterious Mutation Burden and its Association with Complex Traits in Sorghum (). Genetics. PMID 30622134 DOI: 10.1534/genetics.118.301742  1
2018 Ramstein GP, Jensen SE, Buckler ES. Breaking the curse of dimensionality to identify causal variants in Breeding 4. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 30547185 DOI: 10.1007/s00122-018-3267-3  1
2018 Gault CM, Kremling KA, Buckler ES. De novo Transcriptome Assemblies Reveal Parallel Gene Evolution with Maize after Ancient Polyploidy. The Plant Genome. 11. PMID 30512036 DOI: 10.3835/plantgenome2018.02.0012  1
2018 Zhou S, Zhang YK, Kremling KA, Ding Y, Bennett JS, Bae JS, Kim DK, Ackerman HH, Kolomiets MV, Schmelz EA, Schroeder FC, Buckler ES, Jander G. Ethylene signaling regulates natural variation in the abundance of antifungal acetylated diferuloylsucroses and Fusarium graminearum resistance in maize seedling roots. The New Phytologist. PMID 30289553 DOI: 10.1111/nph.15520  1
2018 Wallace JG, Rodgers-Melnick E, Buckler ES. On the Road to Breeding 4.0: Unraveling the Good, the Bad, and the Boring of Crop Quantitative Genomics. Annual Review of Genetics. PMID 30285496 DOI: 10.1146/annurev-genet-120116-024846  1
2018 Li B, Kremling K, Wu P, Bukowski R, Romay M, Xie E, Buckler E, Chen M. Co-regulation of ribosomal RNA with hundreds of genes contributes to phenotypic variations. Genome Research. PMID 30166407 DOI: 10.1101/gr.229716.117  0.48
2018 Springer NM, Anderson SN, Andorf CM, Ahern KR, Bai F, Barad O, Barbazuk WB, Bass HW, Baruch K, Ben-Zvi G, Buckler ES, Bukowski R, Campbell MS, Cannon EKS, Chomet P, et al. The maize W22 genome provides a foundation for functional genomics and transposon biology. Nature Genetics. PMID 30061736 DOI: 10.1038/s41588-018-0158-0  1
2018 Sun S, Zhou Y, Chen J, Shi J, Zhao H, Zhao H, Song W, Zhang M, Cui Y, Dong X, Liu H, Ma X, Jiao Y, Wang B, Wei X, ... ... Buckler ES, et al. Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes. Nature Genetics. PMID 30061735 DOI: 10.1038/s41588-018-0182-0  1
2018 AlKhalifah N, Campbell DA, Falcon CM, Gardiner JM, Miller ND, Romay MC, Walls R, Walton R, Yeh CT, Bohn M, Bubert J, Buckler ES, Ciampitti I, Flint-Garcia S, Gore MA, et al. Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets. Bmc Research Notes. 11: 452. PMID 29986751 DOI: 10.1186/s13104-018-3508-1  1
2018 Walters WA, Jin Z, Youngblut N, Wallace JG, Sutter J, Zhang W, González-Peña A, Peiffer J, Koren O, Shi Q, Knight R, Glavina Del Rio T, Tringe SG, Buckler ES, Dangl JL, et al. Large-scale replicated field study of maize rhizosphere identifies heritable microbes. Proceedings of the National Academy of Sciences of the United States of America. PMID 29941552 DOI: 10.1073/pnas.1800918115  1
2018 Wang J, Zhou Z, Zhang Z, Li H, Liu D, Zhang Q, Bradbury PJ, Buckler ES, Zhang Z. Expanding the BLUP alphabet for genomic prediction adaptable to the genetic architectures of complex traits. Heredity. PMID 29765161 DOI: 10.1038/s41437-018-0075-0  1
2018 Li YX, Chen L, Li C, Bradbury PJ, Shi YS, Song Y, Zhang D, Zhang Z, Buckler ES, Li Y, Wang T. Increased experimental conditions and marker densities identified more genetic loci associated with southern and northern leaf blight resistance in maize. Scientific Reports. 8: 6848. PMID 29717181 DOI: 10.1038/s41598-018-25304-z  1
2018 Kremling KAG, Chen SY, Su MH, Lepak NK, Romay MC, Swarts KL, Lu F, Lorant A, Bradbury PJ, Buckler ES. Dysregulation of expression correlates with rare-allele burden and fitness loss in maize. Nature. PMID 29539638 DOI: 10.1038/nature25966  1
2017 Bukowski R, Guo X, Lu Y, Zou C, He B, Rong Z, Wang B, Xu D, Yang B, Xie C, Fan L, Gao S, Xu X, Zhang G, Li Y, ... ... Buckler ES, et al. Construction of the third generation Zea mays haplotype map. Gigascience. PMID 29300887 DOI: 10.1093/gigascience/gix134  1
2017 Zhang D, Easterling KA, Pitra NJ, Coles MC, Buckler ES, Bass HW, Matthews PD. Non-Mendelian Single-Nucleotide Polymorphism Inheritance and Atypical Meiotic Configurations are Prevalent in Hop. The Plant Genome. 10. PMID 29293819 DOI: 10.3835/plantgenome2017.04.0032  1
2017 Jones MW, Penning BW, Jamann TM, Glaubitz JC, Romay C, Buckler ES, Redinbaugh M. Diverse chromosomal locations of quantitative trait loci for tolerance to maize chlorotic mottle virus in five maize populations. Phytopathology. PMID 29287150 DOI: 10.1094/PHYTO-09-17-0321-R  1
2017 Gage JL, Jarquin D, Romay C, Lorenz A, Buckler ES, Kaeppler S, Alkhalifah N, Bohn M, Campbell DA, Edwards J, Ertl D, Flint-Garcia S, Gardiner J, Good B, Hirsch CN, et al. The effect of artificial selection on phenotypic plasticity in maize. Nature Communications. 8: 1348. PMID 29116144 DOI: 10.1038/s41467-017-01450-2  1
2017 He Y, Wang M, Dukowic-Schulze S, Zhou A, Tiang CL, Shilo S, Sidhu GK, Eichten S, Bradbury P, Springer NM, Buckler ES, Levy AA, Sun Q, Pillardy J, Kianian PMA, et al. Genomic features shaping the landscape of meiotic double-strand-break hotspots in maize. Proceedings of the National Academy of Sciences of the United States of America. PMID 29087335 DOI: 10.1073/pnas.1713225114  1
2017 Diepenbrock CH, Kandianis CB, Lipka AE, Magallanes-Lundback M, Vaillancourt B, Góngora-Castillo E, Wallace JG, Cepela J, Mesberg A, Bradbury P, Ilut DC, Mateos-Hernandez M, Hamilton J, Owens BF, Tiede T, ... Buckler ES, et al. Novel Loci Underlie Natural Variation in Vitamin E Levels in Maize Grain. The Plant Cell. PMID 28970338 DOI: 10.1105/tpc.17.00475  1
2017 Yang J, Mezmouk S, Baumgarten A, Buckler ES, Guill KE, McMullen MD, Mumm RH, Ross-Ibarra J. Incomplete dominance of deleterious alleles contributes substantially to trait variation and heterosis in maize. Plos Genetics. 13: e1007019. PMID 28953891 DOI: 10.1371/journal.pgen.1007019  1
2017 Migicovsky Z, Sawler J, Gardner KM, Aradhya MK, Prins BH, Schwaninger HR, Bustamante CD, Buckler ES, Zhong GY, Brown PJ, Myles S. Patterns of genomic and phenomic diversity in wine and table grapes. Horticulture Research. 4: 17035. PMID 28791127 DOI: 10.1038/hortres.2017.35  1
2017 Swarts K, Gutaker RM, Benz B, Blake M, Bukowski R, Holland J, Kruse-Peeples M, Lepak N, Prim L, Romay MC, Ross-Ibarra J, Sanchez-Gonzalez JJ, Schmidt C, Schuenemann VJ, Krause J, ... ... Buckler ES, et al. Genomic estimation of complex traits reveals ancient maize adaptation to temperate North America. Science (New York, N.Y.). 357: 512-515. PMID 28774930 DOI: 10.1126/science.aam9425  1
2017 Strable J, Wallace JG, Unger-Wallace E, Briggs S, Bradbury P, Buckler ES, Vollbrecht E. Maize YABBY Genes drooping leaf1 and drooping leaf2 Regulate Plant Architecture. The Plant Cell. PMID 28698237 DOI: 10.1105/tpc.16.00477  1
2017 Navarro JAR, Wilcox M, Burgueño J, Romay C, Swarts K, Trachsel S, Preciado E, Terron A, Delgado HV, Vidal V, Ortega A, Banda AE, Montiel NOG, Ortiz-Monasterio I, Vicente FS, ... ... Buckler ES, et al. Corrigendum: A study of allelic diversity underlying flowering-time adaptation in maize landraces. Nature Genetics. 49: 970. PMID 28546574 DOI: 10.1038/ng0617-970c  1
2017 Ramu P, Esuma W, Kawuki R, Rabbi IY, Egesi C, Bredeson JV, Bart RS, Verma J, Buckler ES, Lu F. Cassava haplotype map highlights fixation of deleterious mutations during clonal propagation. Nature Genetics. PMID 28416819 DOI: 10.1038/ng.3845  1
2017 Romero Navarro JA, Wilcox M, Burgueño J, Romay C, Swarts K, Trachsel S, Preciado E, Terron A, Delgado HV, Vidal V, Ortega A, Banda AE, Montiel NO, Ortiz-Monasterio I, Vicente FS, ... ... Buckler ES, et al. A study of allelic diversity underlying flowering-time adaptation in maize landraces. Nature Genetics. PMID 28166212 DOI: 10.1038/ng.3784  1
2016 Tang Y, Liu X, Wang J, Li M, Wang Q, Tian F, Su Z, Pan Y, Liu D, Lipka AE, Buckler ES, Zhang Z. GAPIT Version 2: An Enhanced Integrated Tool for Genomic Association and Prediction. The Plant Genome. 9. PMID 27898829 DOI: 10.3835/plantgenome2015.11.0120  1
2016 Punnuri SM, Wallace JG, Knoll JE, Hyma KE, Mitchell SE, Buckler ES, Varshney RK, Singh BP. Development of a High-Density Linkage Map and Tagging Leaf Spot Resistance in Pearl Millet Using Genotyping-by-Sequencing Markers. The Plant Genome. 9. PMID 27898821 DOI: 10.3835/plantgenome2015.10.0106  1
2016 Li C, Sun B, Li Y, Liu C, Wu X, Zhang D, Shi Y, Song Y, Buckler ES, Zhang Z, Wang T, Li Y. Numerous genetic loci identified for drought tolerance in the maize nested association mapping populations. Bmc Genomics. 17: 894. PMID 27825295 DOI: 10.1186/s12864-016-3170-8  1
2016 Hirsch C, Hirsch CD, Brohammer AB, Bowman MJ, Soifer I, Barad O, Shem-Tov D, Baruch K, Lu F, Hernandez AG, Fields CJ, Wright CL, Koehler K, Springer NM, Buckler ES, et al. Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize. The Plant Cell. PMID 27803309 DOI: 10.1105/tpc.16.00353  1
2016 Richter A, Schaff C, Zhang Z, Lipka AE, Tian F, Köllner TG, Schnee C, Preiss S, Irmisch S, Jander G, Boland W, Gershenzon J, Buckler ES, Degenhardt J. Characterization of biosynthetic pathways for the production of the volatile homoterpenes DMNT and TMTT in Zea mays. The Plant Cell. PMID 27662898 DOI: 10.1105/tpc.15.00919  1
2016 Toubiana D, Xue W, Zhang N, Kremling K, Gur A, Pilosof S, Gibon Y, Stitt M, Buckler ES, Fernie AR, Fait A. Correlation-Based Network Analysis of Metabolite and Enzyme Profiles Reveals a Role of Citrate Biosynthesis in Modulating N and C Metabolism in Zea mays. Frontiers in Plant Science. 7: 1022. PMID 27462343 DOI: 10.3389/fpls.2016.01022  1
2016 McCaw ME, Wallace JG, Albert PS, Buckler ES, Birchler JA. Fast-Flowering Mini-Maize: Seed to Seed in 60 Days. Genetics. PMID 27440866 DOI: 10.1534/genetics.116.191726  1
2016 Li C, Li Y, Shi Y, Song Y, Zhang D, Buckler ES, Zhang Z, Li Y, Wang T. Analysis of recombination QTLs, segregation distortion, and epistasis for fitness in maize multiple populations using ultra-high-density markers. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 27379519 DOI: 10.1007/s00122-016-2739-6  1
2016 Handrick V, Robert CA, Ahern KR, Zhou S, Machado RA, Maag D, Glauser G, Fernandez-Penny FE, Chandran JN, Rodgers-Melnik E, Schneider B, Buckler ES, Boland W, Gershenzon J, Jander G, et al. Biosynthesis of 8-O-Methylated Benzoxazinoid Defense Compounds in Maize. The Plant Cell. 28: 1682-700. PMID 27317675 DOI: 10.1105/tpc.16.00065  1
2016 Li YX, Li C, Bradbury PJ, Liu X, Lu F, Romay MC, Glaubitz JC, Wu X, Peng B, Shi Y, Song Y, Zhang D, Buckler ES, Zhang Z, Li Y, et al. Identification of genetic variants associated with maize flowering time using an extremely large multi-genetic background population. The Plant Journal : For Cell and Molecular Biology. PMID 27012534 DOI: 10.1111/tpj.13174  1
2016 Liu X, Huang M, Fan B, Buckler ES, Zhang Z. Iterative Usage of Fixed and Random Effect Models for Powerful and Efficient Genome-Wide Association Studies. Plos Genetics. 12: e1005767. PMID 26828793 DOI: 10.1371/journal.pgen.1005767  1
2016 Wu X, Li Y, Shi Y, Song Y, Zhang D, Li C, Buckler ES, Li Y, Zhang Z, Wang T. Joint-linkage mapping and GWAS reveal extensive genetic loci that regulate male inflorescence size in maize. Plant Biotechnology Journal. PMID 26801971 DOI: 10.1111/pbi.12519  1
2015 Lasky JR, Upadhyaya HD, Ramu P, Deshpande S, Hash CT, Bonnette J, Juenger TE, Hyma K, Acharya C, Mitchell SE, Buckler ES, Brenton Z, Kresovich S, Morris GP. Genome-environment associations in sorghum landraces predict adaptive traits. Science Advances. 1: e1400218. PMID 26601206 DOI: 10.1126/sciadv.1400218  1
2015 Li C, Li Y, Bradbury PJ, Wu X, Shi Y, Song Y, Zhang D, Rodgers-Melnick E, Buckler ES, Zhang Z, Li Y, Wang T. Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize. Bmc Biology. 13: 78. PMID 26390990 DOI: 10.1186/s12915-015-0187-4  1
2015 Takuno S, Ralph P, Swarts K, Elshire RJ, Glaubitz JC, Buckler ES, Hufford MB, Ross-Ibarra J. Independent Molecular Basis of Convergent Highland Adaptation in Maize. Genetics. PMID 26078279 DOI: 10.1534/genetics.115.178327  1
2015 Zhang N, Gibon Y, Wallace JG, Lepak N, Li P, Dedow L, Chen C, So YS, Kremling K, Bradbury PJ, Brutnell T, Stitt M, Buckler ES. Genome-wide association of carbon and nitrogen metabolism in the maize nested association mapping population. Plant Physiology. 168: 575-83. PMID 25918116 DOI: 10.1104/pp.15.00025  1
2015 Lu F, Romay MC, Glaubitz JC, Bradbury PJ, Elshire RJ, Wang T, Li Y, Li Y, Semagn K, Zhang X, Hernandez AG, Mikel MA, Soifer I, Barad O, Buckler ES. High-resolution genetic mapping of maize pan-genome sequence anchors. Nature Communications. 6: 6914. PMID 25881062 DOI: 10.1038/ncomms7914  1
2015 Li C, Li Y, Shi Y, Song Y, Zhang D, Buckler ES, Zhang Z, Wang T, Li Y. Genetic control of the leaf angle and leaf orientation value as revealed by ultra-high density maps in three connected maize populations. Plos One. 10: e0121624. PMID 25807369 DOI: 10.1371/journal.pone.0121624  1
2015 Rodgers-Melnick E, Bradbury PJ, Elshire RJ, Glaubitz JC, Acharya CB, Mitchell SE, Li C, Li Y, Buckler ES. Recombination in diverse maize is stable, predictable, and associated with genetic load. Proceedings of the National Academy of Sciences of the United States of America. 112: 3823-8. PMID 25775595 DOI: 10.1073/pnas.1413864112  1
2015 Ramstein GP, Lipka AE, Lu F, Costich DE, Cherney JH, Buckler ES, Casler MD. Genome-wide association study based on multiple imputation with low-depth sequencing data: application to biofuel traits in reed canarygrass. G3 (Bethesda, Md.). 5: 891-909. PMID 25770100 DOI: 10.1534/g3.115.017533  1
2015 Yan J, Lipka AE, Schmelz EA, Buckler ES, Jander G. Accumulation of 5-hydroxynorvaline in maize (Zea mays) leaves is induced by insect feeding and abiotic stress. Journal of Experimental Botany. 66: 593-602. PMID 25271262 DOI: 10.1093/jxb/eru385  1
2014 Zila CT, Ogut F, Romay MC, Gardner CA, Buckler ES, Holland JB. Genome-wide association study of Fusarium ear rot disease in the U.S.A. maize inbred line collection. Bmc Plant Biology. 14: 372. PMID 25547028 DOI: 10.1186/s12870-014-0372-6  1
2014 Wallace JG, Bradbury PJ, Zhang N, Gibon Y, Stitt M, Buckler ES. Association mapping across numerous traits reveals patterns of functional variation in maize. Plos Genetics. 10: e1004845. PMID 25474422 DOI: 10.1371/journal.pgen.1004845  1
2014 Lipka AE, Lu F, Cherney JH, Buckler ES, Casler MD, Costich DE. Accelerating the switchgrass (Panicum virgatum L.) breeding cycle using genomic selection approaches. Plos One. 9: e112227. PMID 25390940 DOI: 10.1371/journal.pone.0112227  1
2014 Li M, Liu X, Bradbury P, Yu J, Zhang YM, Todhunter RJ, Buckler ES, Zhang Z. Enrichment of statistical power for genome-wide association studies. Bmc Biology. 12: 73. PMID 25322753 DOI: 10.1186/s12915-014-0073-5  1
2014 Owens BF, Lipka AE, Magallanes-Lundback M, Tiede T, Diepenbrock CH, Kandianis CB, Kim E, Cepela J, Mateos-Hernandez M, Buell CR, Buckler ES, DellaPenna D, Gore MA, Rocheford T. A foundation for provitamin A biofortification of maize: genome-wide association and genomic prediction models of carotenoid levels. Genetics. 198: 1699-716. PMID 25258377 DOI: 10.1534/genetics.114.169979  1
2014 Wang Q, Tian F, Pan Y, Buckler ES, Zhang Z. A SUPER powerful method for genome wide association study. Plos One. 9: e107684. PMID 25247812 DOI: 10.1371/journal.pone.0107684  1
2014 Hirsch CN, Flint-Garcia SA, Beissinger TM, Eichten SR, Deshpande S, Barry K, McMullen MD, Holland JB, Buckler ES, Springer N, Buell CR, de Leon N, Kaeppler SM. Insights into the effects of long-term artificial selection on seed size in maize. Genetics. 198: 409-21. PMID 25037958 DOI: 10.1534/genetics.114.167155  1
2014 Glaubitz JC, Casstevens TM, Lu F, Harriman J, Elshire RJ, Sun Q, Buckler ES. TASSEL-GBS: a high capacity genotyping by sequencing analysis pipeline. Plos One. 9: e90346. PMID 24587335 DOI: 10.1371/journal.pone.0090346  1
2014 Peiffer JA, Romay MC, Gore MA, Flint-Garcia SA, Zhang Z, Millard MJ, Gardner CA, McMullen MD, Holland JB, Bradbury PJ, Buckler ES. The genetic architecture of maize height. Genetics. 196: 1337-56. PMID 24514905 DOI: 10.1534/genetics.113.159152  1
2014 Chitwood DH, Ranjan A, Martinez CC, Headland LR, Thiem T, Kumar R, Covington MF, Hatcher T, Naylor DT, Zimmerman S, Downs N, Raymundo N, Buckler ES, Maloof JN, Aradhya M, et al. A modern ampelography: a genetic basis for leaf shape and venation patterning in grape. Plant Physiology. 164: 259-72. PMID 24285849 DOI: 10.1104/pp.113.229708  1
2014 Wallace JG, Larsson SJ, Buckler ES. Entering the second century of maize quantitative genetics. Heredity. 112: 30-8. PMID 23462502 DOI: 10.1038/hdy.2013.6  1
2013 Miller AJ, Matasci N, Schwaninger H, Aradhya MK, Prins B, Zhong GY, Simon C, Buckler ES, Myles S. Vitis phylogenomics: hybridization intensities from a SNP array outperform genotype calls. Plos One. 8: e78680. PMID 24236035 DOI: 10.1371/journal.pone.0078680  1
2013 Morris GP, Rhodes DH, Brenton Z, Ramu P, Thayil VM, Deshpande S, Hash CT, Acharya C, Mitchell SE, Buckler ES, Yu J, Kresovich S. Dissecting genome-wide association signals for loss-of-function phenotypes in sorghum flavonoid pigmentation traits. G3 (Bethesda, Md.). 3: 2085-94. PMID 24048646 DOI: 10.1534/g3.113.008417  1
2013 Meihls LN, Handrick V, Glauser G, Barbier H, Kaur H, Haribal MM, Lipka AE, Gershenzon J, Buckler ES, Erb M, Köllner TG, Jander G. Natural variation in maize aphid resistance is associated with 2,4-dihydroxy-7-methoxy-1,4-benzoxazin-3-one glucoside methyltransferase activity. The Plant Cell. 25: 2341-55. PMID 23898034 DOI: 10.1105/tpc.113.112409  1
2013 Peiffer JA, Flint-Garcia SA, De Leon N, McMullen MD, Kaeppler SM, Buckler ES. The genetic architecture of maize stalk strength. Plos One. 8: e67066. PMID 23840585 DOI: 10.1371/journal.pone.0067066  1
2013 Romay MC, Millard MJ, Glaubitz JC, Peiffer JA, Swarts KL, Casstevens TM, Elshire RJ, Acharya CB, Mitchell SE, Flint-Garcia SA, McMullen MD, Holland JB, Buckler ES, Gardner CA. Comprehensive genotyping of the USA national maize inbred seed bank. Genome Biology. 14: R55. PMID 23759205 DOI: 10.1186/gb-2013-14-6-r55  1
2013 Lipka AE, Gore MA, Magallanes-Lundback M, Mesberg A, Lin H, Tiede T, Chen C, Buell CR, Buckler ES, Rocheford T, DellaPenna D. Genome-wide association study and pathway-level analysis of tocochromanol levels in maize grain. G3 (Bethesda, Md.). 3: 1287-99. PMID 23733887 DOI: 10.1534/g3.113.006148  1
2013 Peiffer JA, Spor A, Koren O, Jin Z, Tringe SG, Dangl JL, Buckler ES, Ley RE. Diversity and heritability of the maize rhizosphere microbiome under field conditions. Proceedings of the National Academy of Sciences of the United States of America. 110: 6548-53. PMID 23576752 DOI: 10.1073/pnas.1302837110  1
2013 Maron LG, Guimarães CT, Kirst M, Albert PS, Birchler JA, Bradbury PJ, Buckler ES, Coluccio AE, Danilova TV, Kudrna D, Magalhaes JV, Piñeros MA, Schatz MC, Wing RA, Kochian LV. Aluminum tolerance in maize is associated with higher MATE1 gene copy number. Proceedings of the National Academy of Sciences of the United States of America. 110: 5241-6. PMID 23479633 DOI: 10.1073/pnas.1220766110  1
2013 Larsson SJ, Lipka AE, Buckler ES. Lessons from Dwarf8 on the strengths and weaknesses of structured association mapping. Plos Genetics. 9: e1003246. PMID 23437002 DOI: 10.1371/journal.pgen.1003246  1
2013 Lu F, Lipka AE, Glaubitz J, Elshire R, Cherney JH, Casler MD, Buckler ES, Costich DE. Switchgrass genomic diversity, ploidy, and evolution: novel insights from a network-based SNP discovery protocol. Plos Genetics. 9: e1003215. PMID 23349638 DOI: 10.1371/journal.pgen.1003215  1
2013 Morris GP, Ramu P, Deshpande SP, Hash CT, Shah T, Upadhyaya HD, Riera-Lizarazu O, Brown PJ, Acharya CB, Mitchell SE, Harriman J, Glaubitz JC, Buckler ES, Kresovich S. Population genomic and genome-wide association studies of agroclimatic traits in sorghum. Proceedings of the National Academy of Sciences of the United States of America. 110: 453-8. PMID 23267105 DOI: 10.1073/pnas.1215985110  1
2012 Varshney RK, Ribaut JM, Buckler ES, Tuberosa R, Rafalski JA, Langridge P. Can genomics boost productivity of orphan crops? Nature Biotechnology. 30: 1172-6. PMID 23222781 DOI: 10.1038/nbt.2440  1
2012 Ersoz ES, Wright MH, Pangilinan JL, Sheehan MJ, Tobias C, Casler MD, Buckler ES, Costich DE. SNP discovery with EST and NextGen sequencing in switchgrass (Panicum virgatum L.). Plos One. 7: e44112. PMID 23049744 DOI: 10.1371/journal.pone.0044112  1
2012 Lipka AE, Tian F, Wang Q, Peiffer J, Li M, Bradbury PJ, Gore MA, Buckler ES, Zhang Z. GAPIT: genome association and prediction integrated tool. Bioinformatics (Oxford, England). 28: 2397-9. PMID 22796960 DOI: 10.1093/bioinformatics/bts444  1
2012 Hung HY, Shannon LM, Tian F, Bradbury PJ, Chen C, Flint-Garcia SA, McMullen MD, Ware D, Buckler ES, Doebley JF, Holland JB. ZmCCT and the genetic basis of day-length adaptation underlying the postdomestication spread of maize. Proceedings of the National Academy of Sciences of the United States of America. 109: E1913-21. PMID 22711828 DOI: 10.1073/pnas.1203189109  1
2012 Li X, Zhu C, Yeh CT, Wu W, Takacs EM, Petsch KA, Tian F, Bai G, Buckler ES, Muehlbauer GJ, Timmermans MC, Scanlon MJ, Schnable PS, Yu J. Genic and nongenic contributions to natural variation of quantitative traits in maize. Genome Research. 22: 2436-44. PMID 22701078 DOI: 10.1101/gr.140277.112  1
2012 Hufford MB, Xu X, van Heerwaarden J, Pyhäjärvi T, Chia JM, Cartwright RA, Elshire RJ, Glaubitz JC, Guill KE, Kaeppler SM, Lai J, Morrell PL, Shannon LM, Song C, Springer NM, ... ... Buckler ES, et al. Comparative population genomics of maize domestication and improvement. Nature Genetics. 44: 808-11. PMID 22660546 DOI: 10.1038/ng.2309  1
2012 Chia JM, Song C, Bradbury PJ, Costich D, de Leon N, Doebley J, Elshire RJ, Gaut B, Geller L, Glaubitz JC, Gore M, Guill KE, Holland J, Hufford MB, Lai J, ... ... Buckler ES, et al. Maize HapMap2 identifies extant variation from a genome in flux. Nature Genetics. 44: 803-7. PMID 22660545 DOI: 10.1038/ng.2313  1
2012 Cook JP, McMullen MD, Holland JB, Tian F, Bradbury P, Ross-Ibarra J, Buckler ES, Flint-Garcia SA. Genetic architecture of maize kernel composition in the nested association mapping and inbred association panels. Plant Physiology. 158: 824-34. PMID 22135431 DOI: 10.1104/pp.111.185033  1
2011 Morrell PL, Buckler ES, Ross-Ibarra J. Crop genomics: advances and applications. Nature Reviews. Genetics. 13: 85-96. PMID 22207165 DOI: 10.1038/nrg3097  1
2011 Ganal MW, Durstewitz G, Polley A, Bérard A, Buckler ES, Charcosset A, Clarke JD, Graner EM, Hansen M, Joets J, Le Paslier MC, McMullen MD, Montalent P, Rose M, Schön CC, et al. A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome. Plos One. 6: e28334. PMID 22174790 DOI: 10.1371/journal.pone.0028334  1
2011 Brown PJ, Upadyayula N, Mahone GS, Tian F, Bradbury PJ, Myles S, Holland JB, Flint-Garcia S, McMullen MD, Buckler ES, Rocheford TR. Distinct genetic architectures for male and female inflorescence traits of maize. Plos Genetics. 7: e1002383. PMID 22125498 DOI: 10.1371/journal.pgen.1002383  1
2011 Elshire RJ, Glaubitz JC, Sun Q, Poland JA, Kawamoto K, Buckler ES, Mitchell SE. A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. Plos One. 6: e19379. PMID 21573248 DOI: 10.1371/journal.pone.0019379  1
2011 Poland JA, Bradbury PJ, Buckler ES, Nelson RJ. Genome-wide nested association mapping of quantitative resistance to northern leaf blight in maize. Proceedings of the National Academy of Sciences of the United States of America. 108: 6893-8. PMID 21482771 DOI: 10.1073/pnas.1010894108  1
2011 Li H, Bradbury P, Ersoz E, Buckler ES, Wang J. Joint QTL linkage mapping for multiple-cross mating design sharing one common parent. Plos One. 6: e17573. PMID 21423655 DOI: 10.1371/journal.pone.0017573  1
2011 Myles S, Boyko AR, Owens CL, Brown PJ, Grassi F, Aradhya MK, Prins B, Reynolds A, Chia JM, Ware D, Bustamante CD, Buckler ES. Genetic structure and domestication history of the grape. Proceedings of the National Academy of Sciences of the United States of America. 108: 3530-5. PMID 21245334 DOI: 10.1073/pnas.1009363108  1
2011 Hamblin MT, Buckler ES, Jannink JL. Population genetics of genomics-based crop improvement methods. Trends in Genetics : Tig. 27: 98-106. PMID 21227531 DOI: 10.1016/j.tig.2010.12.003  1
2011 Kump KL, Bradbury PJ, Wisser RJ, Buckler ES, Belcher AR, Oropeza-Rosas MA, Zwonitzer JC, Kresovich S, McMullen MD, Ware D, Balint-Kurti PJ, Holland JB. Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population. Nature Genetics. 43: 163-8. PMID 21217757 DOI: 10.1038/ng.747  1
2011 Tian F, Bradbury PJ, Brown PJ, Hung H, Sun Q, Flint-Garcia S, Rocheford TR, McMullen MD, Holland JB, Buckler ES. Genome-wide association study of leaf architecture in the maize nested association mapping population. Nature Genetics. 43: 159-62. PMID 21217756 DOI: 10.1038/ng.746  1
2011 Setter TL, Yan J, Warburton M, Ribaut JM, Xu Y, Sawkins M, Buckler ES, Zhang Z, Gore MA. Genetic association mapping identifies single nucleotide polymorphisms in genes that affect abscisic acid levels in maize floral tissues during drought. Journal of Experimental Botany. 62: 701-16. PMID 21084430 DOI: 10.1093/jxb/erq308  1
2010 Huang X, Wei X, Sang T, Zhao Q, Feng Q, Zhao Y, Li C, Zhu C, Lu T, Zhang Z, Li M, Fan D, Guo Y, Wang A, Wang L, ... ... Buckler ES, et al. Genome-wide association studies of 14 agronomic traits in rice landraces. Nature Genetics. 42: 961-7. PMID 20972439 DOI: 10.1038/ng.695  1
2010 Krill AM, Kirst M, Kochian LV, Buckler ES, Hoekenga OA. Association and linkage analysis of aluminum tolerance genes in maize. Plos One. 5: e9958. PMID 20376361 DOI: 10.1371/journal.pone.0009958  1
2010 Zhang N, Gur A, Gibon Y, Sulpice R, Flint-Garcia S, McMullen MD, Stitt M, Buckler ES. Genetic analysis of central carbon metabolism unveils an amino acid substitution that alters maize NAD-dependent isocitrate dehydrogenase activity. Plos One. 5: e9991. PMID 20376324 DOI: 10.1371/journal.pone.0009991  1
2010 Yan J, Kandianis CB, Harjes CE, Bai L, Kim EH, Yang X, Skinner DJ, Fu Z, Mitchell S, Li Q, Fernandez MG, Zaharieva M, Babu R, Fu Y, Palacios N, ... ... Buckler ES, et al. Rare genetic variation at Zea mays crtRB1 increases beta-carotene in maize grain. Nature Genetics. 42: 322-7. PMID 20305664 DOI: 10.1038/ng.551  1
2010 Zhang Z, Ersoz E, Lai CQ, Todhunter RJ, Tiwari HK, Gore MA, Bradbury PJ, Yu J, Arnett DK, Ordovas JM, Buckler ES. Mixed linear model approach adapted for genome-wide association studies. Nature Genetics. 42: 355-60. PMID 20208535 DOI: 10.1038/ng.546  1
2009 Yan J, Shah T, Warburton ML, Buckler ES, McMullen MD, Crouch J. Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markers. Plos One. 4: e8451. PMID 20041112 DOI: 10.1371/journal.pone.0008451  1
2009 Gore MA, Chia JM, Elshire RJ, Sun Q, Ersoz ES, Hurwitz BL, Peiffer JA, McMullen MD, Grills GS, Ross-Ibarra J, Ware DH, Buckler ES. A first-generation haplotype map of maize. Science (New York, N.Y.). 326: 1115-7. PMID 19965431 DOI: 10.1126/science.1177837  1
2009 Zhang Z, Buckler ES, Casstevens TM, Bradbury PJ. Software engineering the mixed model for genome-wide association studies on large samples. Briefings in Bioinformatics. 10: 664-75. PMID 19933212 DOI: 10.1093/bib/bbp050  1
2009 Flint-Garcia SA, Buckler ES, Tiffin P, Ersoz E, Springer NM. Heterosis is prevalent for multiple traits in diverse maize germplasm. Plos One. 4: e7433. PMID 19823591 DOI: 10.1371/journal.pone.0007433  1
2009 McMullen MD, Kresovich S, Villeda HS, Bradbury P, Li H, Sun Q, Flint-Garcia S, Thornsberry J, Acharya C, Bottoms C, Brown P, Browne C, Eller M, Guill K, Harjes C, ... ... Buckler ES, et al. Genetic properties of the maize nested association mapping population. Science (New York, N.Y.). 325: 737-40. PMID 19661427 DOI: 10.1126/science.1174320  1
2009 Buckler ES, Holland JB, Bradbury PJ, Acharya CB, Brown PJ, Browne C, Ersoz E, Flint-Garcia S, Garcia A, Glaubitz JC, Goodman MM, Harjes C, Guill K, Kroon DE, Larsson S, et al. The genetic architecture of maize flowering time. Science (New York, N.Y.). 325: 714-8. PMID 19661422 DOI: 10.1126/science.1174276  1
2009 Myles S, Peiffer J, Brown PJ, Ersoz ES, Zhang Z, Costich DE, Buckler ES. Association mapping: critical considerations shift from genotyping to experimental design. The Plant Cell. 21: 2194-202. PMID 19654263 DOI: 10.1105/tpc.109.068437  1
2009 Tian F, Stevens NM, Buckler ES. Tracking footprints of maize domestication and evidence for a massive selective sweep on chromosome 10. Proceedings of the National Academy of Sciences of the United States of America. 106: 9979-86. PMID 19528660 DOI: 10.1073/pnas.0901122106  1
2009 Bernardo AN, Bradbury PJ, Ma H, Hu S, Bowden RL, Buckler ES, Bai G. Discovery and mapping of single feature polymorphisms in wheat using Affymetrix arrays. Bmc Genomics. 10: 251. PMID 19480702 DOI: 10.1186/1471-2164-10-251  1
2009 Pressoir G, Brown PJ, Zhu W, Upadyayula N, Rocheford T, Buckler ES, Kresovich S. Natural variation in maize architecture is mediated by allelic differences at the PINOID co-ortholog barren inflorescence2. The Plant Journal : For Cell and Molecular Biology. 58: 618-28. PMID 19154226 DOI: 10.1111/j.1365-313X.2009.03802.x  1
2008 Weber AL, Briggs WH, Rucker J, Baltazar BM, de Jesús Sánchez-Gonzalez J, Feng P, Buckler ES, Doebley J. The genetic architecture of complex traits in teosinte (Zea mays ssp. parviglumis): new evidence from association mapping. Genetics. 180: 1221-32. PMID 18791250 DOI: 10.1534/genetics.108.090134  1
2008 Stich B, Möhring J, Piepho HP, Heckenberger M, Buckler ES, Melchinger AE. Comparison of mixed-model approaches for association mapping. Genetics. 178: 1745-54. PMID 18245847 DOI: 10.1534/genetics.107.079707  1
2008 Yu J, Holland JB, McMullen MD, Buckler ES. Genetic design and statistical power of nested association mapping in maize. Genetics. 178: 539-51. PMID 18202393 DOI: 10.1534/genetics.107.074245  1
2008 Harjes CE, Rocheford TR, Bai L, Brutnell TP, Kandianis CB, Sowinski SG, Stapleton AE, Vallabhaneni R, Williams M, Wurtzel ET, Yan J, Buckler ES. Natural genetic variation in lycopene epsilon cyclase tapped for maize biofortification. Science (New York, N.Y.). 319: 330-3. PMID 18202289 DOI: 10.1126/science.1150255  1
2008 Canaran P, Buckler ES, Glaubitz JC, Stein L, Sun Q, Zhao W, Ware D. Panzea: an update on new content and features. Nucleic Acids Research. 36: D1041-3. PMID 18029361 DOI: 10.1093/nar/gkm1022  1
2008 Liang C, Jaiswal P, Hebbard C, Avraham S, Buckler ES, Casstevens T, Hurwitz B, McCouch S, Ni J, Pujar A, Ravenscroft D, Ren L, Spooner W, Tecle I, Thomason J, et al. Gramene: a growing plant comparative genomics resource. Nucleic Acids Research. 36: D947-53. PMID 17984077 DOI: 10.1093/nar/gkm968  1
2007 Hamblin MT, Warburton ML, Buckler ES. Empirical comparison of Simple Sequence Repeats and single nucleotide polymorphisms in assessment of maize diversity and relatedness. Plos One. 2: e1367. PMID 18159250 DOI: 10.1371/journal.pone.0001367  1
2007 Bradbury PJ, Zhang Z, Kroon DE, Casstevens TM, Ramdoss Y, Buckler ES. TASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics (Oxford, England). 23: 2633-5. PMID 17586829 DOI: 10.1093/bioinformatics/btm308  1
2007 Stich B, Yu J, Melchinger AE, Piepho HP, Utz HF, Maurer HP, Buckler ES. Power to detect higher-order epistatic interactions in a metabolic pathway using a new mapping strategy. Genetics. 176: 563-70. PMID 17194777 DOI: 10.1534/genetics.106.067033  1
2006 Kirst M, Caldo R, Casati P, Tanimoto G, Walbot V, Wise RP, Buckler ES. Genetic diversity contribution to errors in short oligonucleotide microarray analysis. Plant Biotechnology Journal. 4: 489-98. PMID 17309725 DOI: 10.1111/j.1467-7652.2006.00198.x  1
2006 Yu J, Buckler ES. Genetic association mapping and genome organization of maize. Current Opinion in Biotechnology. 17: 155-60. PMID 16504497 DOI: 10.1016/j.copbio.2006.02.003  1
2006 Buckler ES, Gaut BS, McMullen MD. Molecular and functional diversity of maize. Current Opinion in Plant Biology. 9: 172-6. PMID 16459128 DOI: 10.1016/j.pbi.2006.01.013  1
2006 Jaiswal P, Ni J, Yap I, Ware D, Spooner W, Youens-Clark K, Ren L, Liang C, Zhao W, Ratnapu K, Faga B, Canaran P, Fogleman M, Hebbard C, Avraham S, ... ... Buckler ES, et al. Gramene: a bird's eye view of cereal genomes. Nucleic Acids Research. 34: D717-23. PMID 16381966 DOI: 10.1093/nar/gkj154  1
2006 Yu J, Pressoir G, Briggs WH, Vroh Bi I, Yamasaki M, Doebley JF, McMullen MD, Gaut BS, Nielsen DM, Holland JB, Kresovich S, Buckler ES. A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nature Genetics. 38: 203-8. PMID 16380716 DOI: 10.1038/ng1702  1
2005 Flint-Garcia SA, Thuillet AC, Yu J, Pressoir G, Romero SM, Mitchell SE, Doebley J, Kresovich S, Goodman MM, Buckler ES. Maize association population: a high-resolution platform for quantitative trait locus dissection. The Plant Journal : For Cell and Molecular Biology. 44: 1054-64. PMID 16359397 DOI: 10.1111/j.1365-313X.2005.02591.x  1
2005 Vollbrecht E, Springer PS, Goh L, Buckler ES, Martienssen R. Architecture of floral branch systems in maize and related grasses. Nature. 436: 1119-26. PMID 16041362 DOI: 10.1038/nature03892  1
2005 Fukunaga K, Hill J, Vigouroux Y, Matsuoka Y, Sanchez G J, Liu K, Buckler ES, Doebley J. Genetic diversity and population structure of teosinte. Genetics. 169: 2241-54. PMID 15687282 DOI: 10.1534/genetics.104.031393  1
2004 Wilson LM, Whitt SR, Ibáñez AM, Rocheford TR, Goodman MM, Buckler ES. Dissection of maize kernel composition and starch production by candidate gene association. The Plant Cell. 16: 2719-33. PMID 15377761 DOI: 10.1105/tpc.104.025700  1
2004 Casstevens TM, Buckler ES. GDPC: connecting researchers with multiple integrated data sources. Bioinformatics (Oxford, England). 20: 2839-40. PMID 15105279 DOI: 10.1093/bioinformatics/bth277  1
2002 Whitt SR, Wilson LM, Tenaillon MI, Gaut BS, Buckler ES. Genetic diversity and selection in the maize starch pathway. Proceedings of the National Academy of Sciences of the United States of America. 99: 12959-62. PMID 12244216 DOI: 10.1073/pnas.202476999  1
2002 Buckler ES, Thornsberry JM. Plant molecular diversity and applications to genomics. Current Opinion in Plant Biology. 5: 107-11. PMID 11856604  0.4
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