Youngsook Lee - Related publications

University of Wisconsin, Madison, Madison, WI 
Molecular Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2019 Bertero A, Fields PA, Ramani V, Bonora G, Yardimci GG, Reinecke H, Pabon L, Noble WS, Shendure J, Murry CE. Dynamics of genome reorganization during human cardiogenesis reveal an RBM20-dependent splicing factory. Nature Communications. 10: 1538. PMID 30948719 DOI: 10.1038/s41467-019-09483-5   
2019 Lazcano I, Rodríguez-Ortiz R, Villalobos P, Martínez-Torres A, Solís-Saínz JC, Orozco A. Knock-Down of Specific Thyroid Hormone Receptor Isoforms Impairs Body Plan Development in Zebrafish. Frontiers in Endocrinology. 10: 156. PMID 30930855 DOI: 10.3389/fendo.2019.00156   
2019 Lv J, Ma Q, Dasgupta C, Xu Z, Zhang L. Antenatal Hypoxia and Programming of Glucocorticoid Receptor Expression in the Adult Rat Heart. Frontiers in Physiology. 10: 323. PMID 31001129 DOI: 10.3389/fphys.2019.00323   
2019 Huang X, Wei C, Li F, Jia L, Zeng P, Li J, Tan J, Sun T, Jiang S, Wang J, Tang X, Zhao Q, Liu B, Rong L, Li C, et al. PCGF6 regulates stem cell pluripotency as a transcription activator via super-enhancer dependent chromatin interactions. Protein & Cell. PMID 31041782 DOI: 10.1007/s13238-019-0629-9   
2019 Zhang Z, Zhang AD, Kim LJ, Nam YJ. Ensuring expression of four core cardiogenic transcription factors enhances cardiac reprogramming. Scientific Reports. 9: 6362. PMID 31019236 DOI: 10.1038/s41598-019-42945-w   
2019 Zhang K, Wang M, Zhao Y, Wang W. Taiji: System-level identification of key transcription factors reveals transcriptional waves in mouse embryonic development. Science Advances. 5: eaav3262. PMID 30944857 DOI: 10.1126/sciadv.aav3262   
2019 Zhang Z, Zhang Q, Lal H, Nam YJ. Generation of Nppa-tagBFP reporter knock-in mouse line for studying cardiac chamber specification. Genesis (New York, N.Y. : 2000). e23294. PMID 30920727 DOI: 10.1002/dvg.23294   
2019 Shah K, Cao W, Ellison CE. Adenine Methylation in Is Associated with the Tissue-Specific Expression of Developmental and Regulatory Genes. G3 (Bethesda, Md.). PMID 30988038 DOI: 10.1534/g3.119.400023   
2019 Foley TE, Hess B, Savory JGA, Ringuette R, Lohnes D. Role of Cdx factors in early mesodermal fate decisions. Development (Cambridge, England). 146. PMID 30936115 DOI: 10.1242/dev.170498   
2019 Gonen N, Lovell-Badge R. The regulation of Sox9 expression in the gonad. Current Topics in Developmental Biology. 134: 223-252. PMID 30999977 DOI: 10.1016/bs.ctdb.2019.01.004   
2019 Greenberg MVC, Teissandier A, Walter M, Noordermeer D, Bourc'his D. Dynamic enhancer partitioning instructs activation of a growth-related gene during exit from naïve pluripotency. Elife. 8. PMID 30990414 DOI: 10.7554/eLife.44057   
2019 Fardon M, Dehaini H, Kamar A, Bitar F, Majdalani M, El-Rassi I, Nemer G, Arabi M. A Novel Somatic Variant in HEY2 Unveils an Alternative Splicing Isoform Linked to Ventricular Septal Defect. Pediatric Cardiology. PMID 30955100 DOI: 10.1007/s00246-019-02099-y   
2019 Vander Schaaf NA, Oghamian S, Park JA, Kang L, Laird PW, Lee KH. In vivo Application of the REMOTE-control System for the Manipulation of Endogenous Gene Expression. Journal of Visualized Experiments : Jove. PMID 30985765 DOI: 10.3791/59235   
2019 Roos-Weil D, Decaudin C, Armand M, Della-Valle V, Diop MK, Ghamlouch H, Ropars V, Herate C, Lara D, Durot E, Haddad R, Mylonas E, Damm F, Pflumio F, Stoilova B, et al. A recurrent activating missense mutation in Waldenström macroglobulinemia affects the DNA binding of the ETS transcription factor SPI1 and enhances proliferation. Cancer Discovery. PMID 31018969 DOI: 10.1158/2159-8290.CD-18-0873   
2019 He X, Tan C, Li Z, Zhao C, Shi J, Zhou R, Wang X, Jiang G, Cai G, Liu D, Wu Z. Characterization and comparative analyses of transcriptomes of cloned and fertilized porcine pre-implantation embryos. Biology Open. PMID 30952695 DOI: 10.1242/bio.039917   
2019 Pontis J, Planet E, Offner S, Turelli P, Duc J, Coudray A, Theunissen TW, Jaenisch R, Trono D. Hominoid-Specific Transposable Elements and KZFPs Facilitate Human Embryonic Genome Activation and Control Transcription in Naive Human ESCs. Cell Stem Cell. PMID 31006620 DOI: 10.1016/j.stem.2019.03.012   
2019 Jiao B, Zhao X, Lu W, Guo L, Luo K. The R2R3 MYB transcription factor MYB189 negatively regulates secondary cell wall biosynthesis in Populus. Tree Physiology. PMID 30968143 DOI: 10.1093/treephys/tpz040   
2019 Todd CD, Deniz Ö, Taylor D, Branco MR. Functional evaluation of transposable elements as enhancers in mouse embryonic and trophoblast stem cells. Elife. 8. PMID 31012843 DOI: 10.7554/eLife.44344   
2019 McCorkindale AL, Wahle P, Werner S, Jungreis I, Menzel P, Shukla CJ, Abreu RLP, Irizarry RA, Meyer IM, Kellis M, Zinzen RP. A gene expression atlas of embryonic neurogenesis in reveals complex spatiotemporal regulation of lncRNAs. Development (Cambridge, England). 146. PMID 30923056 DOI: 10.1242/dev.175265   
2019 Huang T, González YR, Qu D, Huang E, Safarpour F, Wang E, Joselin A, Im DS, Callaghan SM, Boonying W, Julian L, Dunwoodie SL, Slack RS, Park DS. The pro-death role of Cited2 in stroke is regulated by E2F1/4 transcription factors. The Journal of Biological Chemistry. PMID 30967472 DOI: 10.1074/jbc.RA119.007941   
2019 Nava M, Dutta P, Farias-Eisner R, Vadgama JV, Wu Y. Utilization of NGS technologies to investigate transcriptomic and epigenomic mechanisms in trastuzumab resistance. Scientific Reports. 9: 5141. PMID 30914750 DOI: 10.1038/s41598-019-41672-6   
2019 Maslon MM, Braunschweig U, Aitken S, Mann AR, Kilanowski F, Hunter CJ, Blencowe BJ, Kornblihtt AR, Adams IR, Cáceres JF. A slow transcription rate causes embryonic lethality and perturbs kinetic coupling of neuronal genes. The Embo Journal. PMID 30988016 DOI: 10.15252/embj.2018101244   
2019 Molina MD, Gache C, Lepage T. Expression of exogenous mRNAs to study gene function in echinoderm embryos. Methods in Cell Biology. 151: 239-282. PMID 30948011 DOI: 10.1016/bs.mcb.2018.10.011   
2019 Bradaschia-Correa V, Leclerc K, Josephson AM, Lee S, Palma L, Litwa HP, Neibart SS, Huo JC, Leucht P. Hox gene expression determines cell fate of adult periosteal stem/progenitor cells. Scientific Reports. 9: 5043. PMID 30911091 DOI: 10.1038/s41598-019-41639-7   
2019 Edling CE, Fazmin IT, Chadda KR, Ahmad S, Valli H, Grace AA, Huang CL, Jeevaratnam K. Ageing in mice modelling mitochondrial dysfunction induces differential expression of a range of genes regulating ventricular electrophysiology. Bioscience Reports. PMID 30914453 DOI: 10.1042/BSR20190127   
2019 Ryu J, Kim H, Yang D, Lee AJ, Jung I. A new class of constitutively active super-enhancers is associated with fast recovery of 3D chromatin loops. Bmc Bioinformatics. 20: 127. PMID 30925856 DOI: 10.1186/s12859-019-2646-3   
2019 Steinauer N, Guo C, Huang C, Wong M, Tu Y, Freter CE, Zhang J. Myeloid translocation gene CBFA2T3 directs a relapse gene program and determines patient-specific outcomes in AML. Blood Advances. 3: 1379-1393. PMID 31040112 DOI: 10.1182/bloodadvances.2018028514   
2019 Nham GTH, Zhang X, Asou Y, Shinomura T. Expression of type II collagen and aggrecan genes is regulated through distinct epigenetic modifications of their multiple enhancer elements. Gene. PMID 30981839 DOI: 10.1016/j.gene.2019.04.034   
2019 Brown A, Winter J, Gapinske M, Tague N, Woods WS, Perez-Pinera P. Multiplexed and tunable transcriptional activation by promoter insertion using nuclease-assisted vector integration. Nucleic Acids Research. PMID 30931472 DOI: 10.1093/nar/gkz210   
2019 Convertini P, Todisco S, De Santis F, Pappalardo I, Iacobazzi D, Castiglione Morelli MA, Fondufe-Mittendorf YN, Martelli G, Palmieri F, Infantino V. Transcriptional Regulation Factors of the Human Mitochondrial Aspartate/Glutamate Carrier Gene, Isoform 2 (): USF1 as Basal Factor and FOXA2 as Activator in Liver Cells. International Journal of Molecular Sciences. 20. PMID 30995827 DOI: 10.3390/ijms20081888   
2019 Xia H, Dufour CR, Giguère V. ERRα as a Bridge Between Transcription and Function: Role in Liver Metabolism and Disease. Frontiers in Endocrinology. 10: 206. PMID 31024446 DOI: 10.3389/fendo.2019.00206   
2019 Catizone AN, Good CR, Alexander KA, Berger SL, Sammons MA. Comparison of genotoxic versus nongenotoxic stabilization of p53 provides insight into parallel stress-responsive transcriptional networks. Cell Cycle (Georgetown, Tex.). 1-15. PMID 30966857 DOI: 10.1080/15384101.2019.1593643   
2019 Feng H, Gu ZY, Li Q, Liu QH, Yang XY, Zhang JJ. Identification of significant genes with poor prognosis in ovarian cancer via bioinformatical analysis. Journal of Ovarian Research. 12: 35. PMID 31010415 DOI: 10.1186/s13048-019-0508-2   
2019 Gomez-Gonzalez PJ, Andreu N, Phelan JE, de Sessions PF, Glynn JR, Crampin AC, Campino S, Butcher PD, Hibberd ML, Clark TG. An integrated whole genome analysis of Mycobacterium tuberculosis reveals insights into relationship between its genome, transcriptome and methylome. Scientific Reports. 9: 5204. PMID 30914757 DOI: 10.1038/s41598-019-41692-2   
2019 Azizi Z, Mirtavoos-Mahyari H, Karimi R, Noroozi Z, Motevaseli E. Long non-coding RNAs: Diverse roles in various disorders. Human Antibodies. PMID 30909207 DOI: 10.3233/HAB-190374   
2019 Luo H, Sobh A, Vulpe CD, Brewer E, Dovat S, Qiu Y, Huang S. HOX Loci Focused CRISPR/sgRNA Library Screening Identifying Critical CTCF Boundaries. Journal of Visualized Experiments : Jove. PMID 30985763 DOI: 10.3791/59382   
2019 Atlasi Y, Megchelenbrink W, Peng T, Habibi E, Joshi O, Wang SY, Wang C, Logie C, Poser I, Marks H, Stunnenberg HG. Epigenetic modulation of a hardwired 3D chromatin landscape in two naive states of pluripotency. Nature Cell Biology. PMID 31036938 DOI: 10.1038/s41556-019-0310-9   
2019 Ghazale H, Ripoll C, Leventoux N, Jacob L, Azar S, Mamaeva D, Glasson Y, Calvo CF, Thomas JL, Meneceur S, Lallemand Y, Rigau V, Perrin FE, Noristani HN, Rocamonde B, et al. RNA Profiling of the Human and Mouse Spinal Cord Stem Cell Niches Reveals an Embryonic-like Regionalization with MSX1 Roof-Plate-Derived Cells. Stem Cell Reports. PMID 31031189 DOI: 10.1016/j.stemcr.2019.04.001   
2019 Li C, Chen Y, Xie L, Zhang R. Transcription factor Pf-Rel regulates expression of matrix protein genes Prismalin-14 and MSI60 in the pearl oyster Pinctada fucata. Acta Biochimica Et Biophysica Sinica. PMID 30989236 DOI: 10.1093/abbs/gmz031   
2019 Monczor F, Chatzopoulou A, Zappia CD, Houtman R, Meijer OC, Fitzsimons CP. A Model of Glucocorticoid Receptor Interaction With Coregulators Predicts Transcriptional Regulation of Target Genes. Frontiers in Pharmacology. 10: 214. PMID 30930776 DOI: 10.3389/fphar.2019.00214   
2019 Mirisis AA, Carew TJ. The ELAV family of RNA-binding proteins in synaptic plasticity and long-term memory. Neurobiology of Learning and Memory. PMID 30998973 DOI: 10.1016/j.nlm.2019.04.007   
2019 Cui W, Li X, Hull L, Xiao M. GATA-type transcription factors play a vital role in radiation sensitivity of Cryptococcus neoformans by regulating the gene expression of specific amino acid permeases. Scientific Reports. 9: 6385. PMID 31015536 DOI: 10.1038/s41598-019-42778-7   
2019 Jiang S, Koolmeister C, Misic J, Siira S, Kühl I, Ramos ES, Miranda M, Jiang M, Posse V, Lytovchenko O, Atanassov I, Schober FA, Wibom R, Hultenby K, Milenkovic D, et al. TEFM regulates both transcription elongation and RNA processing in mitochondria. Embo Reports. PMID 31036713 DOI: 10.15252/embr.201948101   
2019 Górska AM, Gouveia P, Borba AR, Zimmermann A, Serra TS, Lourenço TF, Oliveira MM, Peterhänsel C, Saibo NJM. ZmbHLH80 and ZmbHLH90 transcription factors act antagonistically and contribute to regulate PEPC1 cell-specific gene expression in maize. The Plant Journal : For Cell and Molecular Biology. PMID 30900785 DOI: 10.1111/tpj.14323   
2019 Li K, Hu F, Xiong W, Wei Q, Liu FF. Network-based transcriptomic analysis reveals novel melatonin-sensitive genes in cardiovascular system. Endocrine. PMID 30989468 DOI: 10.1007/s12020-019-01925-w   
2019 Roberts B, Hendershott MC, Arakaki J, Gerbin KA, Malik H, Nelson A, Gehring J, Hookway C, Ludmann SA, Yang R, Haupt A, Grancharova T, Valencia V, Fuqua MA, Tucker A, et al. Fluorescent Gene Tagging of Transcriptionally Silent Genes in hiPSCs. Stem Cell Reports. PMID 30956114 DOI: 10.1016/j.stemcr.2019.03.001   
2019 Mack SC, Singh I, Wang X, Hirsch R, Wu Q, Villagomez R, Bernatchez JA, Zhu Z, Gimple RC, Kim LJY, Morton A, Lai S, Qiu Z, Prager BC, Bertrand KC, et al. Chromatin landscapes reveal developmentally encoded transcriptional states that define human glioblastoma. The Journal of Experimental Medicine. PMID 30948495 DOI: 10.1084/jem.20190196   
2019 Mukhopadhyay P, Seelan RS, Greene RM, Pisano MM. Impact of Prenatal Arsenate Exposure on Gene Expression in a Pure Population of Migratory Cranial Neural Crest Cells. Reproductive Toxicology (Elmsford, N.Y.). PMID 30953684 DOI: 10.1016/j.reprotox.2019.04.001   
2019 Wang L, Lu W, Ran L, Dou L, Yao S, Hu J, Fan D, Li C, Luo K. R2R3-MYB transcription factor MYB6 promotes anthocyanin and proanthocyanidin biosynthesis but inhibits secondary cell wall formation in Populus tomentosa. The Plant Journal : For Cell and Molecular Biology. PMID 31021017 DOI: 10.1111/tpj.14364   
2019 Choi WI, Yoon JH, Song JY, Jeon BN, Park JM, Koh DI, Ahn YH, Kim KS, Lee IK, Hur MW. Zbtb7c is a critical gluconeogenic transcription factor that induces glucose-6-phosphatase and phosphoenylpyruvate carboxykinase 1 genes expression during mice fasting. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. PMID 30959128 DOI: 10.1016/j.bbagrm.2019.04.001