Matthew A. Gitzendanner - Publications

Affiliations: 
University of Florida, Gainesville, Gainesville, FL, United States 
Area:
Molecular Biology, Botany Biology, Systematic Biology

52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Mavrodiev EV, Dervinis C, Whitten WM, Gitzendanner MA, Kirst M, Kim S, Kinser TJ, Soltis PS, Soltis DE. A new, simple, highly scalable, and efficient protocol for genomic DNA extraction from diverse plant taxa. Applications in Plant Sciences. 9: e11413. PMID 33854847 DOI: 10.1002/aps3.11413  1
2021 Daniell H, Jin S, Zhu XG, Gitzendanner MA, Soltis DE, Soltis PS. Green giant - a tiny chloroplast genome with mighty power to produce high-value proteins: history and phylogeny. Plant Biotechnology Journal. PMID 33484606 DOI: 10.1111/pbi.13556  1
2020 Melton AE, Chen S, Zhao Y, Fu C, Xiang QJ, Cheng S, Wong GK, Soltis PS, Soltis DE, Gitzendanner MA. Genetic insights into the evolution of genera with the eastern Asia-eastern North America floristic disjunction: a transcriptomics analysis. American Journal of Botany. PMID 33280088 DOI: 10.1002/ajb2.1579  1
2020 Sun M, Folk RA, Gitzendanner MA, Soltis PS, Chen Z, Soltis DE, Guralnick RP. Recent accelerated diversification in rosids occurred outside the tropics. Nature Communications. 11: 3333. PMID 32620894 DOI: 10.1038/S41467-020-17116-5  1
2020 Sun M, Folk RA, Gitzendanner MA, Soltis PS, Chen Z, Soltis DE, Guralnick RP. Estimating rates and patterns of diversification with incomplete sampling: a case study in the rosids. American Journal of Botany. PMID 32519354 DOI: 10.1002/Ajb2.1479  1
2020 Stull GW, Soltis PS, Soltis DE, Gitzendanner MA, Smith SA. Nuclear phylogenomic analyses of asterids conflict with plastome trees and support novel relationships among major lineages. American Journal of Botany. PMID 32406108 DOI: 10.1002/Ajb2.1468  1
2020 Lopes JML, de Carvalho HH, Zorzatto C, Azevedo ALS, Machado MA, Salimena FRG, Grazul RM, Gitzendanner MA, Soltis DE, Soltis PS, Viccini LF. Genetic relationships and polyploid origins in the Lippia alba complex. American Journal of Botany. PMID 32115694 DOI: 10.1002/Ajb2.1443  1
2019 Carpenter EJ, Matasci N, Ayyampalayam S, Wu S, Sun J, Yu J, Jimenez Vieira FR, Bowler C, Dorrell RG, Gitzendanner MA, Li L, Du W, K Ullrich K, Wickett NJ, Barkmann TJ, et al. Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP). Gigascience. 8. PMID 31644802 DOI: 10.1093/Gigascience/Giz126  0.64
2019 Li HT, Yi TS, Gao LM, Ma PF, Zhang T, Yang JB, Gitzendanner MA, Fritsch PW, Cai J, Luo Y, Wang H, van der Bank M, Zhang SD, Wang QF, Wang J, et al. Origin of angiosperms and the puzzle of the Jurassic gap. Nature Plants. PMID 31061536 DOI: 10.1038/S41477-019-0421-0  1
2018 Wang Y, Jiang W, Ye W, Fu C, Gitzendanner MA, Soltis PS, Soltis DE, Qiu Y. Evolutionary insights from comparative transcriptome and transcriptome-wide coalescence analyses in Tetrastigma hemsleyanum. Bmc Plant Biology. 18: 208. PMID 30249188 DOI: 10.1186/S12870-018-1429-8  1
2018 Hodel RG, Chandler LM, Fahrenkrog AM, Kirst M, Gitzendanner MA, Soltis DE, Soltis PS. Linking genome signatures of selection and adaptation in non-model plants: exploring potential and limitations in the angiosperm Amborella. Current Opinion in Plant Biology. 42: 81-89. PMID 29694936 DOI: 10.1016/J.Pbi.2018.04.003  1
2018 Gitzendanner MA, Soltis PS, Wong GK, Ruhfel BR, Soltis DE. Plastid phylogenomic analysis of green plants: A billion years of evolutionary history. American Journal of Botany. PMID 29603143 DOI: 10.1002/Ajb2.1048  1
2017 García N, Folk RA, Meerow AW, Chamala S, Gitzendanner MA, Souza de Oliveira R, Soltis DE, Soltis PS. Deep reticulation and incomplete lineage sorting obscure the diploid phylogeny of rain-lilies and allies (Amaryllidaceae tribe Hippeastreae). Molecular Phylogenetics and Evolution. PMID 28390909 DOI: 10.1016/J.Ympev.2017.04.003  1
2016 Hodel RG, Segovia-Salcedo MC, Landis JB, Crowl AA, Sun M, Liu X, Gitzendanner MA, Douglas NA, Germain-Aubrey CC, Chen S, Soltis DE, Soltis PS. The report of my death was an exaggeration: A review for researchers using microsatellites in the 21st century. Applications in Plant Sciences. 4. PMID 27347456 DOI: 10.3732/Apps.1600025  1
2016 Hodel RG, Gitzendanner MA, Germain-Aubrey CC, Liu X, Crowl AA, Sun M, Landis JB, Segovia-Salcedo MC, Douglas NA, Chen S, Soltis DE, Soltis PS. A new resource for the development of SSR markers: Millions of loci from a thousand plant transcriptomes. Applications in Plant Sciences. 4. PMID 27347455 DOI: 10.3732/Apps.1600024  1
2016 Germain-Aubrey CC, Nelson C, Soltis DE, Soltis PS, Gitzendanner MA. Are microsatellite fragment lengths useful for population-level studies? The case of Polygala lewtonii (Polygalaceae). Applications in Plant Sciences. 4. PMID 26949579 DOI: 10.3732/Apps.1500115  1
2016 Mukherjee A, Williams D, Gitzendanner MA, Overholt WA, Cuda JP. Microsatellite and chloroplast DNA diversity of the invasive aquatic weed Hygrophila polysperma in native and invasive ranges Aquatic Botany. 129: 55-61. DOI: 10.1016/J.Aquabot.2015.12.004  1
2015 Landis JB, O'Toole RD, Ventura KL, Gitzendanner MA, Oppenheimer DG, Soltis DE, Soltis PS. The Phenotypic and Genetic Underpinnings of Flower Size in Polemoniaceae. Frontiers in Plant Science. 6: 1144. PMID 26779209 DOI: 10.3389/Fpls.2015.01144  1
2015 Wolf PG, Sessa EB, Marchant DB, Li FW, Rothfels CJ, Sigel EM, Gitzendanner MA, Visger CJ, Banks JA, Soltis DE, Soltis PS, Pryer KM, Der JP. An Exploration into Fern Genome Space. Genome Biology and Evolution. 7: 2533-44. PMID 26311176 DOI: 10.1093/Gbe/Evv163  1
2015 Servick S, Visger CJ, Gitzendanner MA, Soltis PS, Soltis DE. Population genetic variation, geographic structure, and multiple origins of autopolyploidy in Galax urceolata. American Journal of Botany. 102: 973-82. PMID 26101421 DOI: 10.3732/Ajb.1400554  1
2015 Jordon-Thaden IE, Chanderbali AS, Gitzendanner MA, Soltis DE. Modified CTAB and TRIzol protocols improve RNA extraction from chemically complex Embryophyta. Applications in Plant Sciences. 3. PMID 25995975 DOI: 10.3732/Apps.1400105  1
2015 Deng JB, Drew BT, Mavrodiev EV, Gitzendanner MA, Soltis PS, Soltis DE. Phylogeny, divergence times, and historical biogeography of the angiosperm family Saxifragaceae. Molecular Phylogenetics and Evolution. 83: 86-98. PMID 25479063 DOI: 10.1016/J.Ympev.2014.11.011  1
2014 Matasci N, Hung LH, Yan Z, Carpenter EJ, Wickett NJ, Mirarab S, Nguyen N, Warnow T, Ayyampalayam S, Barker M, Burleigh JG, Gitzendanner MA, Wafula E, Der JP, dePamphilis CW, et al. Data access for the 1,000 Plants (1KP) project. Gigascience. 3: 17. PMID 25625010 DOI: 10.1186/2047-217X-3-17  1
2014 Vergara R, Gitzendanner MA, Soltis DE, Soltis PS. Population genetic structure, genetic diversity, and natural history of the South American species of Nothofagus subgenus Lophozonia (Nothofagaceae) inferred from nuclear microsatellite data. Ecology and Evolution. 4: 2450-71. PMID 25360279 DOI: 10.1002/Ece3.1108  1
2014 Wickett NJ, Mirarab S, Nguyen N, Warnow T, Carpenter E, Matasci N, Ayyampalayam S, Barker MS, Burleigh JG, Gitzendanner MA, Ruhfel BR, Wafula E, Der JP, Graham SW, Mathews S, et al. Phylotranscriptomic analysis of the origin and early diversification of land plants. Proceedings of the National Academy of Sciences of the United States of America. 111: E4859-68. PMID 25355905 DOI: 10.1073/Pnas.1323926111  1
2014 Soltis DE, Segovia-Salcedo MC, Jordon-Thaden I, Majure L, Miles NM, Mavrodiev EV, Mei W, Cortez MB, Soltis PS, Gitzendanner MA. Are polyploids really evolutionary dead-ends (again)? A critical reappraisal of Mayrose et al. (). The New Phytologist. 202: 1105-17. PMID 24754325 DOI: 10.1111/Nph.12756  1
2014 Ruhfel BR, Gitzendanner MA, Soltis PS, Soltis DE, Burleigh JG. From algae to angiosperms-inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes. Bmc Evolutionary Biology. 14: 23. PMID 24533922 DOI: 10.1186/1471-2148-14-23  1
2014 Drew BT, Ruhfel BR, Smith SA, Moore MJ, Briggs BG, Gitzendanner MA, Soltis PS, Soltis DE. Another look at the root of the angiosperms reveals a familiar tale. Systematic Biology. 63: 368-82. PMID 24391149 DOI: 10.1093/Sysbio/Syt108  1
2014 Maia VH, Gitzendanner MA, Soltis PS, Wong GKS, Soltis DE. Angiosperm phylogeny based on 18S/26S rDNA sequence data: Constructing a large data set using next-generation sequence data International Journal of Plant Sciences. 175: 613-650. DOI: 10.1086/676675  1
2014 Germain-Aubrey CC, Soltis PS, Neubig KM, Thurston T, Soltis DE, Gitzendanner MA. Using comparative biogeography to retrace the origins of an ecosystem: The case of four plants endemic to the central Florida scrub International Journal of Plant Sciences. 175: 418-431. DOI: 10.1086/675571  1
2013 Stull GW, Moore MJ, Mandala VS, Douglas NA, Kates HR, Qi X, Brockington SF, Soltis PS, Soltis DE, Gitzendanner MA. A targeted enrichment strategy for massively parallel sequencing of angiosperm plastid genomes. Applications in Plant Sciences. 1. PMID 25202518 DOI: 10.3732/Apps.1200497  1
2013 Soltis DE, Gitzendanner MA, Stull G, Chester M, Chanderbali A, Jordon-Thaden I, Chamala S, Soltis PS, Schnable PS, Brad Barbazuk W. The potential of genomics in plant systematics Taxon. 62: 886-898. DOI: 10.12705/625.13  1
2012 Xiang CL, Gitzendanner MA, Soltis DE, Peng H, Lei LG. Phylogenetic placement of the enigmatic and critically endangered genus Saniculiphyllum (Saxifragaceae) inferred from combined analysis of plastid and nuclear DNA sequences. Molecular Phylogenetics and Evolution. 64: 357-67. PMID 22548837 DOI: 10.1016/J.Ympev.2012.04.010  1
2012 Soltis DE, Mavrodiev EV, Meyers SC, Severns PM, Zhang L, Gitzendanner MA, Ayers T, Chester M, Soltis PS. Additional origins of Ownbey's Tragopogon mirus Botanical Journal of the Linnean Society. 169: 297-311. DOI: 10.1111/J.1095-8339.2012.01244.X  1
2012 Godden GT, Jordon-Thaden IE, Chamala S, Crowl AA, García N, Germain-Aubrey CC, Heaney JM, Latvis M, Qi X, Gitzendanner MA. Making next-generation sequencing work for you: approaches and practical considerations for marker development and phylogenetics Plant Ecology and Diversity. 5: 427-450. DOI: 10.1080/17550874.2012.745909  1
2012 Mavrodiev EV, Gitzendanner M, Calaminus AK, Baldini RM, Soltis PS, Soltis DE. Molecular phylogeny of Tragopogon L. (Asteraceae) based on seven nuclear loci (Adh, GapC, LFY, AP3, PI, ITS, and ETS) Webbia. 67: 111-137. DOI: 10.1080/00837792.2012.10670912  1
2012 Hargrove J, Gitzendanner M, Austin JD. Isolation and characterization of 14 novel polymorphic loci for the Florida mouse (Podomys floridanus) Conservation Genetics Resources. 4: 411-413. DOI: 10.1007/S12686-011-9562-9  1
2012 Gitzendanner MA, Weekley CW, Germain-Aubrey CC, Soltis DE, Soltis PS. Microsatellite evidence for high clonality and limited genetic diversity in Ziziphus celata (Rhamnaceae), an endangered, self-incompatible shrub endemic to the Lake Wales Ridge, Florida, USA Conservation Genetics. 13: 223-234. DOI: 10.1007/S10592-011-0287-9  1
2011 Soltis DE, Smith SA, Cellinese N, Wurdack KJ, Tank DC, Brockington SF, Refulio-Rodriguez NF, Walker JB, Moore MJ, Carlsward BS, Bell CD, Latvis M, Crawley S, Black C, Diouf D, ... ... Gitzendanner MA, et al. Angiosperm phylogeny: 17 genes, 640 taxa. American Journal of Botany. 98: 704-30. PMID 21613169 DOI: 10.3732/Ajb.1000404  1
2011 Germain-Aubrey CC, Soltis PS, Soltis DE, Gitzendanner MA. Microsatellite marker development for the federally listed Prunus geniculata (Rosaceae). American Journal of Botany. 98: e58-60. PMID 21613125 DOI: 10.3732/Ajb.1000435  1
2011 Moore MJ, Hassan N, Gitzendanner MA, Bruenn RA, Croley M, Vandeventer A, Horn JW, Dhingra A, Brockington SF, Latvis M, Ramdial J, Alexandre R, Piedrahita A, Xi Z, Davis CC, et al. Phylogenetic analysis of the plastid inverted repeat for 244 species: Insights into deeper-level Angiosperm relationships from a long, slowly evolving sequence region International Journal of Plant Sciences. 172: 541-558. DOI: 10.1086/658923  1
2010 López-Vinyallonga S, Arakaki M, Garcia-Jacas N, Susanna A, Gitzendanner MA, Soltis DE, Soltis PS. Isolation and characterization of novel microsatellite markers for Arctium minus (Compositae). American Journal of Botany. 97: e4-6. PMID 21622378 DOI: 10.3732/Ajb.0900376  1
2010 Chanderbali AS, Yoo MJ, Zahn LM, Brockington SF, Wall PK, Gitzendanner MA, Albert VA, Leebens-Mack J, Altman NS, Ma H, dePamphilis CW, Soltis DE, Soltis PS. Conservation and canalization of gene expression during angiosperm diversification accompany the origin and evolution of the flower. Proceedings of the National Academy of Sciences of the United States of America. 107: 22570-5. PMID 21149731 DOI: 10.1073/Pnas.1013395108  1
2008 Jian S, Soltis PS, Gitzendanner MA, Moore MJ, Li R, Hendry TA, Qiu YL, Dhingra A, Bell CD, Soltis DE. Resolving an ancient, rapid radiation in Saxifragales. Systematic Biology. 57: 38-57. PMID 18275001 DOI: 10.1080/10635150801888871  1
2007 Oliveira LO, Huck RB, Gitzendanner MA, Judd WS, Soltis DE, Soltis PS. Molecular phylogeny, biogeography, and systematics of Dicerandra (Lamiaceae), a genus endemic to the southeastern United States. American Journal of Botany. 94: 1017-27. PMID 21636471 DOI: 10.3732/Ajb.94.6.1017  1
2007 Althoff DM, Gitzendanner MA, Segraves KA. The utility of amplified fragment length polymorphisms in phylogenetics: a comparison of homology within and between genomes. Systematic Biology. 56: 477-84. PMID 17562471 DOI: 10.1080/10635150701427077  1
2007 Soltis DE, Clayton JW, Davis CC, Gitzendanner MA, Cheek M, Savolainen V, Amorim AM, Soltis PS. Monophyly and relationships of the enigmatic family Peridiscaceae Taxon. 56: 65-73. DOI: 10.2307/25065736  1
2007 Mavrodiev EV, Soltis PS, Gitzendanner MA, Baldini RM, Soltis DE. Polyphyly of Tragopogon porrifolius L. (Asteraceae), a European native with intercontinental disjuncts International Journal of Plant Sciences. 168: 889-904. DOI: 10.1086/518258  1
2007 Soltis DE, Gitzendanner MA, Soltis PS. A 567-taxon data set for angiosperms: The challenges posed by Bayesian analyses of large data sets International Journal of Plant Sciences. 168: 137-157. DOI: 10.1086/509788  1
2005 Meléndez-Ackerman EJ, Speranza P, Kress WJ, Rohena L, Toledo E, Cortés C, Treece D, Gitzendanner M, Soltis P, Soltis D. Microevolutionary processes inferred from AFLP and morphological variation in Heliconia bihai (Heliconiaceae) International Journal of Plant Sciences. 166: 781-794. DOI: 10.1086/431231  1
2005 Mavrodiev EV, Tancig M, Sherwood AM, Gitzendanner MA, Rocca J, Soltis PS, Soltis DE. Phylogeny of Tragopogon L. (Asteraceae) based on internal and external transcribed spacer sequence data International Journal of Plant Sciences. 166: 117-133. DOI: 10.1086/425206  1
2000 Gitzendanner MA, Soltis PS. Patterns of genetic variation in rare and widespread plant congeners. American Journal of Botany. 87: 783-92. PMID 10860909  1
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