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David Richard Benson - Publications

Affiliations: 
University of Kansas, Lawrence, KS, United States 
Area:
Heme proteins
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Benson DR, Deng B, Kashipathy MM, Lovell S, Battaile KP, Cooper A, Gao P, Fenton AW, Zhu H. The N-terminal intrinsically disordered region of Ncb5or docks with the cytochrome b core to form a helical motif that is of ancient origin. Proteins. PMID 38041394 DOI: 10.1002/prot.26647  0.342
2019 Benson DR, Lovell S, Mehzabeen N, Galeva N, Cooper A, Gao P, Battaile KP, Zhu H. Crystal structures of the naturally fused CS and cytochrome b reductase (bR) domains of Ncb5or reveal an expanded CS fold, extensive CS-bR interactions and productive binding of the NAD(P) nicotinamide ring. Acta Crystallographica. Section D, Structural Biology. 75: 628-638. PMID 31282472 DOI: 10.2210/Pdb6Mv1/Pdb  0.426
2013 Benson DR, Rivera M. Heme uptake and metabolism in bacteria. Metal Ions in Life Sciences. 12: 279-332. PMID 23595676 DOI: 10.1007/978-94-007-5561-1_9  0.346
2011 Parthasarathy S, Altuve A, Terzyan S, Zhang X, Kuczera K, Rivera M, Benson DR. Accommodating a nonconservative internal mutation by water-mediated hydrogen bonding between β-sheet strands: a comparison of human and rat type B (mitochondrial) cytochrome b5. Biochemistry. 50: 5544-54. PMID 21574570 DOI: 10.1021/Bi2004729  0.424
2010 Deng B, Parthasarathy S, Wang W, Gibney BR, Battaile KP, Lovell S, Benson DR, Zhu H. Study of the individual cytochrome b5 and cytochrome b5 reductase domains of Ncb5or reveals a unique heme pocket and a possible role of the CS domain. The Journal of Biological Chemistry. 285: 30181-91. PMID 20630863 DOI: 10.1074/Jbc.M110.120329  0.451
2007 Wang L, Cowley AB, Benson DR. Enhancing the thermal stability of mitochondrial cytochrome b5 by introducing a structural motif characteristic of the less stable microsomal isoform. Protein Engineering, Design & Selection : Peds. 20: 511-20. PMID 17962223 DOI: 10.1093/Protein/Gzm053  0.78
2007 Wang L, Cowley AB, Terzyan S, Zhang X, Benson DR. Comparison of cytochromes b5 from insects and vertebrates. Proteins. 67: 293-304. PMID 17299762 DOI: 10.1002/Prot.21250  0.789
2007 Cowley AB, Benson DR. Weak-field anions displace the histidine ligand in a synthetic heme peptide but not in N-acetylmicroperoxidase-8: possible role of heme geometry differences. Inorganic Chemistry. 46: 48-59. PMID 17198412 DOI: 10.1021/Ic060682C  0.761
2006 Cowley AB, Kennedy ML, Silchenko S, Lukat-Rodgers GS, Rodgers KR, Benson DR. Insight into heme protein redox potential control and functional aspects of six-coordinate ligand-sensing heme proteins from studies of synthetic heme peptides. Inorganic Chemistry. 45: 9985-10001. PMID 17140194 DOI: 10.1021/Ic052205K  0.772
2006 Wang L, Sun N, Terzyan S, Zhang X, Benson DR. A histidine/tryptophan pi-stacking interaction stabilizes the heme-independent folding core of microsomal apocytochrome b5 relative to that of mitochondrial apocytochrome b5. Biochemistry. 45: 13750-9. PMID 17105194 DOI: 10.1021/Bi0615689  0.547
2006 Cheng Q, Benson DR, Rivera M, Kuczera K. Influence of point mutations on the flexibility of cytochrome b5: molecular dynamics simulations of holoproteins. Biopolymers. 83: 297-312. PMID 16807901 DOI: 10.1002/Bip.20563  0.491
2005 Cowley AB, Sun N, Rivera M, Benson DR. Divergence in nonspecific hydrophobic packing interactions in the apo state, and its possible role in functional specialization of mitochondrial and microsomal cytochrome b5. Biochemistry. 44: 14606-15. PMID 16262260 DOI: 10.1021/Bi051337M  0.784
2005 Sun N, Wang A, Cowley AB, Altuve A, Rivera M, Benson DR. Enhancing the stability of microsomal cytochrome b5: a rational approach informed by comparative studies with the outer mitochondrial membrane isoform. Protein Engineering, Design & Selection : Peds. 18: 571-9. PMID 16246823 DOI: 10.1093/Protein/Gzi067  0.792
2005 Simeonov M, Altuve A, Massiah MA, Wang A, Eastman MA, Benson DR, Rivera M. Mitochondrial and microsomal ferric b5 cytochromes exhibit divergent conformational plasticity in the context of a common fold. Biochemistry. 44: 9308-19. PMID 15981997 DOI: 10.1021/Bi050564L  0.495
2004 Cowley AB, Rivera M, Benson DR. Stabilizing roles of residual structure in the empty heme binding pockets and unfolded states of microsomal and mitochondrial apocytochrome b5. Protein Science : a Publication of the Protein Society. 13: 2316-29. PMID 15295112 DOI: 10.1110/Ps.04817704  0.787
2004 Cowley AB, Lukat-Rodgers GS, Rodgers KR, Benson DR. A possible role for the covalent heme-protein linkage in cytochrome c revealed via comparison of N-acetylmicroperoxidase-8 and a synthetic, monohistidine-coordinated heme peptide. Biochemistry. 43: 1656-66. PMID 14769043 DOI: 10.1021/Bi035531P  0.762
2004 Altuve A, Wang L, Benson DR, Rivera M. Mammalian mitochondrial and microsomal cytochromes b(5) exhibit divergent structural and biophysical characteristics. Biochemical and Biophysical Research Communications. 314: 602-9. PMID 14733950 DOI: 10.1016/J.Bbrc.2003.12.138  0.519
2003 Lushington GH, Cowley AB, Silchenko S, Lukat-Rodgers GS, Rodgers KR, Benson DR. Comparison of thioethers and sulfoxides as axial ligands for N-acetylmicroperoxidase-8: implications for oxidation of methionine-80 in cytochrome c. Inorganic Chemistry. 42: 7550-9. PMID 14606851 DOI: 10.1021/Ic034689V  0.753
2003 Wang L, Bieber Urbauer RJ, Urbauer JL, Benson DR. House fly cytochrome b5 exhibits kinetically trapped hemin and selectivity in hemin binding. Biochemical and Biophysical Research Communications. 305: 840-5. PMID 12767907 DOI: 10.1016/S0006-291X(03)00842-8  0.494
2002 Cowley AB, Altuve A, Kuchment O, Terzyan S, Zhang X, Rivera M, Benson DR. Toward engineering the stability and hemin-binding properties of microsomal cytochromes b5 into rat outer mitochondrial membrane cytochrome b5: examining the influence of residues 25 and 71. Biochemistry. 41: 11566-81. PMID 12269800 DOI: 10.1021/Bi026005L  0.758
2001 Altuve A, Silchenko S, Lee KH, Kuczera K, Terzyan S, Zhang X, Benson DR, Rivera M. Probing the differences between rat liver outer mitochondrial membrane cytochrome b5 and microsomal cytochromes b5. Biochemistry. 40: 9469-83. PMID 11583146 DOI: 10.1021/Bi010636I  0.485
2001 Kennedy ML, Silchenko S, Houndonougbo N, Gibney BR, Dutton PL, Rodgers KR, Benson DR. Model hemoprotein reduction potentials: the effects of histidine-to-iron coordination equilibrium. Journal of the American Chemical Society. 123: 4635-6. PMID 11457264 DOI: 10.1021/ja0156441  0.622
2000 Silchenko S, Sippel ML, Kuchment O, Benson DR, Mauk AG, Altuve A, Rivera M. Hemin is kinetically trapped in cytochrome b(5) from rat outer mitochondrial membrane. Biochemical and Biophysical Research Communications. 273: 467-72. PMID 10873629 DOI: 10.1006/Bbrc.2000.2968  0.492
2000 Lee K, Kennedy ML, Buchalova M, Benson DR. Thermodynamics of Carbon Monoxide Binding by Helical Hemoprotein Models: the Effect of a Competing Intramolecular Ligand Tetrahedron. 56: 9725-9731. DOI: 10.1016/S0040-4020(00)00879-6  0.708
1999 Liu D, Williamson DA, Kennedy ML, Williams TD, Morton MM, Benson DR. Aromatic side chain-porphyrin interactions in designed hemoproteins Journal of the American Chemical Society. 121: 11798-11812. DOI: 10.1021/Ja990606R  0.693
1997 Arnold PA, Benson DR, Brink DJ, Hendrich MP, Jas GS, Kennedy ML, Petasis DT, Wang M. Helix Induction and Springboard Strain in Peptide-Sandwiched Mesohemes1 Inorganic Chemistry. 36: 5306-5315. DOI: 10.1021/Ic960444P  0.642
1997 Wang M, Kennedy ML, Hart BR, Benson DR. The bis-p-nitrophenyl ester of iron(III) mesoporphyrin II acetate: Preparation and incorporation into a model hemoprotein Chemical Communications. 883-884.  0.606
1993 Chung HH, Benson DR, Schultz PG. Probing the role of lysine 16 in ras p21 protein with unnatural amino acids Journal of the American Chemical Society. 115: 6414-6415. DOI: 10.1021/Ja00067A068  0.411
1993 Benson DR, Valentekovich R, Tam S, Diederich F. Catalytic Cyclophanes. Part VIII. Cytochrome P-450 activity of a porphyrin-bridged cyclophane Helvetica Chimica Acta. 76: 2034-2060. DOI: 10.1002/Hlca.19930760519  0.434
1992 Rozsnyai LF, Benson DR, Fodor SPA, Schultz PG. Photolithographic Immobilization of Biopolymers on Solid Supports Angewandte Chemie International Edition in English. 31: 759-761. DOI: 10.1002/Anie.199207591  0.304
1991 Benson DR, Valentekovich R, Knobler CB, Diederich F. Porphyrin-cyclophanes: Inclusion complexation and x-ray crystal structure of a zinc octamethyldiphenylporphyrin Tetrahedron. 47: 2401-2422. DOI: 10.1016/S0040-4020(01)81777-4  0.308
1990 Benson DR, Valentekovich R, Diederich F. Catalytic Cyclophanes: A Porphyrin-Bridged Cyclophane as a Model for Cytochrome P-450 Enzymes Angewandte Chemie International Edition in English. 29: 191-193. DOI: 10.1002/anie.199001911  0.331
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