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Shigehiro Kuraku - Publications

Affiliations: 
1998-2002 Kyoto University (Japan) 
 2002-2007 RIKEN (Japan) 
 2007-2012 University of Konstanz, Konstanz, Germany 
 2012-2022 RIKEN (Japan) 
 2021- National Institute of Genetics (Japan) 
Area:
Molecular evolution, developmental biology, genome informatics
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122 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Nishihara H, Toda Y, Kuramoto T, Kamohara K, Goto A, Hoshino K, Okada S, Kuraku S, Okabe M, Ishimaru Y. A vertebrate-wide catalogue of T1R receptors reveals diversity in taste perception. Nature Ecology & Evolution. PMID 38093021 DOI: 10.1038/s41559-023-02258-8  0.355
2023 Yamaguchi K, Uno Y, Kadota M, Nishimura O, Nozu R, Murakumo K, Matsumoto R, Sato K, Kuraku S. Elasmobranch genome sequencing reveals evolutionary trends of vertebrate karyotypic organization. Genome Research. PMID 37591668 DOI: 10.1101/gr.276840.122  0.736
2023 Hara Y, Kuraku S. The impact of local genomic properties on the evolutionary fate of genes. Elife. 12. PMID 37223962 DOI: 10.7554/eLife.82290  0.781
2023 Yamaguchi K, Koyanagi M, Sato K, Terakita A, Kuraku S. Whale shark rhodopsin adapted to deep-sea lifestyle by a substitution associated with human disease. Proceedings of the National Academy of Sciences of the United States of America. 120: e2220728120. PMID 36943890 DOI: 10.1073/pnas.2220728120  0.621
2023 Linz DM, Hara Y, Deem KD, Kuraku S, Hayashi S, Tomoyasu Y. Transcriptomic exploration of the Coleopteran wings reveals insight into the evolution of novel structures associated with the beetle elytron. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 36617687 DOI: 10.1002/jez.b.23188  0.766
2022 Kuraku S, Kaiya H, Tanaka T, Hyodo S. Evolution of Vertebrate Hormones and Their Receptors: Insights from Non-Osteichthyan Genomes. Annual Review of Animal Biosciences. PMID 36400012 DOI: 10.1146/annurev-animal-050922-071351  0.411
2022 Nishimura O, Rozewicki J, Yamaguchi K, Tatsumi K, Ohishi Y, Ohta T, Yagura M, Niwa T, Tanegashima C, Teramura A, Hirase S, Kawaguchi A, Tan M, D'Aniello S, Castro F, ... ... Kuraku S, et al. Squalomix: shark and ray genome analysis consortium and its data sharing platform. F1000research. 11: 1077. PMID 36262334 DOI: 10.12688/f1000research.123591.1  0.826
2022 Blaxter M, Archibald JM, Childers AK, Coddington JA, Crandall KA, Di Palma F, Durbin R, Edwards SV, Graves JAM, Hackett KJ, Hall N, Jarvis ED, Johnson RN, Karlsson EK, Kress WJ, ... Kuraku S, et al. Why sequence all eukaryotes? Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35042801 DOI: 10.1073/pnas.2115636118  0.31
2021 Das S, Rast JP, Li J, Kadota M, Donald JA, Kuraku S, Hirano M, Cooper MD. Evolution of variable lymphocyte receptor B antibody loci in jawless vertebrates. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34880135 DOI: 10.1073/pnas.2116522118  0.414
2021 Sugahara F, Pascual-Anaya J, Kuraku S, Kuratani S, Murakami Y. Genetic Mechanism for the Cyclostome Cerebellar Neurons Reveals Early Evolution of the Vertebrate Cerebellum. Frontiers in Cell and Developmental Biology. 9: 700860. PMID 34485287 DOI: 10.3389/fcell.2021.700860  0.718
2021 Hoffmann FG, Storz JF, Kuraku S, Vandewege MW, Opazo JC. Whole-genome duplications and the diversification of the Globin-X Genes of vertebrates. Genome Biology and Evolution. PMID 34480557 DOI: 10.1093/gbe/evab205  0.448
2021 Kuraku S. Corrigendum to "Shark and ray genomics for disentangling their morphological diversity and vertebrate evolution" [Developmental Biology 477 (2021) 262-272]. Developmental Biology. 480: 13. PMID 34419650 DOI: 10.1016/j.ydbio.2021.08.003  0.34
2021 Tan M, Redmond AK, Dooley H, Nozu R, Sato K, Kuraku S, Koren S, Phillippy AM, Dove AD, Read T. The whale shark genome reveals patterns of vertebrate gene family evolution. Elife. 10. PMID 34409936 DOI: 10.7554/eLife.65394  0.41
2021 Kuraku S. Shark and ray genomics for disentangling their morphological diversity and vertebrate evolution. Developmental Biology. PMID 34102168 DOI: 10.1016/j.ydbio.2021.06.001  0.466
2021 Fujimoto S, Yamanaka K, Tanegashima C, Nishimura O, Kuraku S, Kuratani S, Irie N. Measuring potential effects of the developmental burden associated with the vertebrate notochord. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 33689235 DOI: 10.1002/jez.b.23032  0.584
2021 Onimaru K, Tatsumi K, Tanegashima C, Kadota M, Nishimura O, Kuraku S. Developmental hourglass and heterochronic shifts in fin and limb development. Elife. 10. PMID 33560225 DOI: 10.7554/eLife.62865  0.769
2020 Xiong P, Hulsey CD, Fruciano C, Wong WY, Nater A, Kautt AF, Simakov O, Pippel M, Kuraku S, Meyer A, Franchini P. The Comparative Genomic Landscape of Adaptive Radiation in Crater Lake Cichlid Fishes. Molecular Ecology. PMID 33305470 DOI: 10.1111/mec.15774  0.825
2020 Uno Y, Nozu R, Kiyatake I, Higashiguchi N, Sodeyama S, Murakumo K, Sato K, Kuraku S. Cell culture-based karyotyping of orectolobiform sharks for chromosome-scale genome analysis. Communications Biology. 3: 652. PMID 33159152 DOI: 10.1038/s42003-020-01373-7  0.695
2020 Yamaguchi K, Koyanagi M, Kuraku S. Visual and non-visual opsin genes of sharks and other non-osteichthyan vertebrates: genomic exploration of underwater photoreception. Journal of Evolutionary Biology. PMID 33135271 DOI: 10.1111/jeb.13730  0.735
2020 Kuraku S, Yamaguchi K, Terakita A, Koyanagi M. Letter to the editor. Visual Neuroscience. 37: E009. PMID 33028447 DOI: 10.1017/S0952523820000073  0.586
2020 Kadota M, Yamaguchi K, Hara Y, Kuraku S. Early vertebrate origin of CTCFL, a CTCF paralog, revealed by proximity-guided shark genome scaffolding. Scientific Reports. 10: 14629. PMID 32884037 DOI: 10.1038/S41598-020-71602-W  0.8
2020 Onimaru K, Nishimura O, Kuraku S. Predicting gene regulatory regions with a convolutional neural network for processing double-strand genome sequence information. Plos One. 15: e0235748. PMID 32701977 DOI: 10.1371/Journal.Pone.0235748  0.8
2020 Kadota M, Nishimura O, Miura H, Tanaka K, Hiratani I, Kuraku S. Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding? Gigascience. 9. PMID 31919520 DOI: 10.1093/Gigascience/Giz158  0.38
2020 Kajikawa E, Horo U, Ide T, Mizuno K, Minegishi K, Hara Y, Ikawa Y, Nishimura H, Uchikawa M, Kiyonari H, Kuraku S, Hamada H. Nodal paralogues underlie distinct mechanisms for visceral left-right asymmetry in reptiles and mammals. Nature Ecology & Evolution. PMID 31907383 DOI: 10.1038/S41559-019-1072-2  0.725
2019 Kishida T, Go Y, Tatsumoto S, Tatsumi K, Kuraku S, Toda M. Loss of olfaction in sea snakes provides new perspectives on the aquatic adaptation of amniotes. Proceedings. Biological Sciences. 286: 20191828. PMID 31506057 DOI: 10.1098/Rspb.2019.1828  0.472
2019 Opazo JC, Kuraku S, Zavala K, Toloza-Villalobos J, Hoffmann FG. Evolution of nodal and nodal-related genes and the putative composition of the heterodimers that trigger the nodal pathway in vertebrates. Evolution & Development. e12292. PMID 31210006 DOI: 10.1111/Ede.12292  0.508
2019 Imaseki I, Wakabayashi M, Hara Y, Watanabe T, Takabe S, Kakumura K, Honda Y, Ueda K, Murakumo K, Matsumoto R, Matsumoto Y, Nakamura M, Takagi W, Kuraku S, Hyodo S. Comprehensive analysis of genes contributing to euryhalinity in the bull shark, ; Na-Cl co-transporter is one of the key renal factors up-regulated in acclimation to low-salinity environment in bull sharks, but not in houndsharks, . The Journal of Experimental Biology. PMID 31138636 DOI: 10.1242/Jeb.201780  0.74
2019 Nishimura O, Hara Y, Kuraku S. Evaluating Genome Assemblies and Gene Models Using gVolante. Methods in Molecular Biology (Clifton, N.J.). 1962: 247-256. PMID 31020565 DOI: 10.1007/978-1-4939-9173-0_15  0.749
2019 Feiner N, Motone F, Meyer A, Kuraku S. Asymmetric paralog evolution between the "cryptic" gene Bmp16 and its well-studied sister genes Bmp2 and Bmp4. Scientific Reports. 9: 3136. PMID 30816280 DOI: 10.1038/S41598-019-40055-1  0.819
2019 Kawaguchi M, Sugiyama K, Matsubara K, Lin CY, Kuraku S, Hashimoto S, Suwa Y, Yong LW, Takino K, Higashida S, Kawamura D, Yu JK, Seki Y. Co-option of the PRDM14-CBFA2T complex from motor neurons to pluripotent cells during vertebrate evolution. Development (Cambridge, England). PMID 30630825 DOI: 10.1242/Dev.168633  0.334
2018 Hara Y, Yamaguchi K, Onimaru K, Kadota M, Koyanagi M, Keeley SD, Tatsumi K, Tanaka K, Motone F, Kageyama Y, Nozu R, Adachi N, Nishimura O, Nakagawa R, Tanegashima C, ... ... Kuraku S, et al. Shark genomes provide insights into elasmobranch evolution and the origin of vertebrates. Nature Ecology & Evolution. 2: 1761-1771. PMID 30297745 DOI: 10.1038/S41559-018-0673-5  0.818
2018 Tanegashima C, Nishimura O, Motone F, Tatsumi K, Kadota M, Kuraku S. Embryonic transcriptome sequencing of the ocellate spot skate Okamejei kenojei. Scientific Data. 5: 180200. PMID 30295675 DOI: 10.1038/Sdata.2018.200  0.416
2018 Onimaru K, Tatsumi K, Shibagaki K, Kuraku S. A de novo transcriptome assembly of the zebra bullhead shark, Heterodontus zebra. Scientific Data. 5: 180197. PMID 30295671 DOI: 10.1038/Sdata.2018.197  0.78
2018 Nabeshima R, Nishimura O, Maeda T, Shimizu N, Ide T, Yashiro K, Sakai Y, Meno C, Kadota M, Shiratori H, Kuraku S, Hamada H. Loss of Fam60a, a Sin3a subunit, results in embryonic lethality and is associated with aberrant methylation at a subset of gene promoters. Elife. 7. PMID 30070635 DOI: 10.7554/Elife.36435  0.396
2018 Hara Y, Takeuchi M, Kageyama Y, Tatsumi K, Hibi M, Kiyonari H, Kuraku S. Madagascar ground gecko genome analysis characterizes asymmetric fates of duplicated genes. Bmc Biology. 16: 40. PMID 29661185 DOI: 10.1186/S12915-018-0509-4  0.783
2018 Onimaru K, Kuraku S. Inference of the ancestral vertebrate phenotype through vestiges of the whole-genome duplications. Briefings in Functional Genomics. PMID 29566222 DOI: 10.1093/Bfgp/Ely008  0.802
2018 Onimaru K, Motone F, Kiyatake I, Nishida K, Kuraku S. A staging table for the embryonic development of the brownbanded bamboo shark (Chiloscyllium punctatum). Developmental Dynamics : An Official Publication of the American Association of Anatomists. PMID 29396887 DOI: 10.1002/Dvdy.24623  0.794
2018 Nabeshima R, Nishimura O, Maeda T, Shimizu N, Ide T, Yashiro K, Sakai Y, Meno C, Kadota M, Shiratori H, Kuraku S, Hamada H. Author response: Loss of Fam60a, a Sin3a subunit, results in embryonic lethality and is associated with aberrant methylation at a subset of gene promoters Elife. DOI: 10.7554/Elife.36435.059  0.32
2017 Okamoto E, Kusakabe R, Kuraku S, Hyodo S, Robert-Moreno A, Onimaru K, Sharpe J, Kuratani S, Tanaka M. Publisher Correction: Migratory appendicular muscles precursor cells in the common ancestor to all vertebrates. Nature Ecology & Evolution. PMID 29042579 DOI: 10.1038/S41559-017-0374-5  0.758
2017 Nishimura O, Hara Y, Kuraku S. gVolante for standardizing completeness assessment of genome and transcriptome assemblies. Bioinformatics (Oxford, England). PMID 29036533 DOI: 10.1093/Bioinformatics/Btx445  0.737
2017 Okamoto E, Kusakabe R, Kuraku S, Hyodo S, Robert-Moreno A, Onimaru K, Sharpe J, Kuratani S, Tanaka M. Migratory appendicular muscles precursor cells in the common ancestor to all vertebrates. Nature Ecology & Evolution. PMID 28970537 DOI: 10.1038/S41559-017-0330-4  0.762
2017 Kadota M, Hara Y, Tanaka K, Takagi W, Tanegashima C, Nishimura O, Kuraku S. CTCF binding landscape in jawless fish with reference to Hox cluster evolution. Scientific Reports. 7: 4957. PMID 28694486 DOI: 10.1038/S41598-017-04506-X  0.732
2016 Ishijima J, Uno Y, Nunome M, Nishida C, Kuraku S, Matsuda Y. Molecular cytogenetic characterization of chromosome site-specific repetitive sequences in the Arctic lamprey (Lethenteron camtschaticum, Petromyzontidae). Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 28025319 DOI: 10.1093/Dnares/Dsw053  0.728
2016 Takeuchi M, Yamaguchi S, Sakakibara M, Hayashi T, Matsuda K, Hara Y, Tanegashima C, Shimizu T, Kuraku S, Hibi M. Gene expression profiling of granule cells and Purkinje cells in the zebrafish cerebellum. The Journal of Comparative Neurology. PMID 27615194 DOI: 10.1002/Cne.24114  0.748
2016 Gutierrez-Mazariegos J, Nadendla EK, Studer RA, Alvarez S, de Lera AR, Kuraku S, Bourguet W, Schubert M, Laudet V. Evolutionary diversification of retinoic acid receptor ligand-binding pocket structure by molecular tinkering. Royal Society Open Science. 3: 150484. PMID 27069642 DOI: 10.1098/Rsos.150484  0.403
2016 Sugahara F, Pascual-Anaya J, Oisi Y, Kuraku S, Aota S, Adachi N, Takagi W, Hirai T, Sato N, Murakami Y, Kuratani S. Evidence from cyclostomes for complex regionalization of the ancestral vertebrate brain. Nature. 531: 97-100. PMID 26878236 DOI: 10.1038/Nature16518  0.778
2016 Kuraku S, Feiner N, Keeley SD, Hara Y. Incorporating tree-thinking and evolutionary time scale into developmental biology. Development, Growth & Differentiation. 58: 131-42. PMID 26818824 DOI: 10.1111/Dgd.12258  0.819
2016 Moriyama Y, Ito F, Takeda H, Yano T, Okabe M, Kuraku S, Keeley FW, Koshiba-Takeuchi K. Evolution of the fish heart by sub/neofunctionalization of an elastin gene. Nature Communications. 7: 10397. PMID 26783159 DOI: 10.1038/Ncomms10397  0.405
2016 Gutierrez-Mazariegos J, Nadendla EK, Studer RA, Alvarez S, de Lera AR, Kuraku S, Bourguet W, Schubert M, Laudet V. Evolutionary diversification of retinoic acid receptor ligand-binding pocket structure by molecular tinkering Royal Society Open Science. 3. DOI: 10.1098/rsos.150484  0.305
2016 Sugahara F, Pascual-Anaya J, Oisi Y, Kuraku S, Aota SI, Adachi N, Takagi W, Hirai T, Sato N, Murakami Y, Kuratani S. Evidence from cyclostomes for complex regionalization of the ancestral vertebrate brain Nature. 531: 97-100. DOI: 10.1038/nature16518  0.675
2015 Hara Y, Tatsumi K, Yoshida M, Kajikawa E, Kiyonari H, Kuraku S. Optimizing and benchmarking de novo transcriptome sequencing: from library preparation to assembly evaluation. Bmc Genomics. 16: 977. PMID 26581708 DOI: 10.1186/S12864-015-2007-1  0.742
2015 Ogino Y, Kuraku S, Ishibashi H, Miyakawa H, Sumiya E, Miyagawa S, Matsubara H, Yamada G, Baker ME, Iguchi T. Neofunctionalization of Androgen Receptor by Gain-of-function Mutations in Teleost Fish Lineage. Molecular Biology and Evolution. PMID 26507457 DOI: 10.1093/Molbev/Msv218  0.417
2015 Koyanagi M, Wada S, Kawano-Yamashita E, Hara Y, Kuraku S, Kosaka S, Kawakami K, Tamotsu S, Tsukamoto H, Shichida Y, Terakita A. Diversification of non-visual photopigment parapinopsin in spectral sensitivity for diverse pineal functions. Bmc Biology. 13: 73. PMID 26370232 DOI: 10.1186/S12915-015-0174-9  0.777
2015 Yamaguchi Y, Takagi W, Kuraku S, Moriyama S, Bell JD, Seale AP, Lerner DT, Grau EG, Hyodo S. Discovery of conventional prolactin from the holocephalan elephant fish, Callorhinchus milii. General and Comparative Endocrinology. PMID 26320855 DOI: 10.1016/J.Ygcen.2015.08.020  0.38
2015 Onimaru K, Kuraku S, Takagi W, Hyodo S, Sharpe J, Tanaka M. A shift in anterior-posterior positional information underlies the fin-to-limb evolution. Elife. 4. PMID 26283004 DOI: 10.7554/Elife.07048  0.761
2015 Campo-Paysaa F, Jandzik D, Takio-Ogawa Y, Cattell MV, Neef HC, Langeland JA, Kuratani S, Medeiros DM, Mazan S, Kuraku S, Laudet V, Schubert M. Evolution of retinoic acid receptors in chordates: insights from three lamprey species, Lampetra fluviatilis, Petromyzon marinus, and Lethenteron japonicum. Evodevo. 6: 18. PMID 25984292 DOI: 10.1186/S13227-015-0016-4  0.542
2015 Tatsumi K, Nishimura O, Itomi K, Tanegashima C, Kuraku S. Optimization and cost-saving in tagmentation-based mate-pair library preparation and sequencing. Biotechniques. 58: 253-7. PMID 25967904 DOI: 10.2144/000114288  0.314
2015 Noro M, Sugahara F, Kuraku S. Reevaluating Emx gene phylogeny: homopolymeric amino acid tracts as a potential factor obscuring orthology signals in cyclostome genes. Bmc Evolutionary Biology. 15: 78. PMID 25935411 DOI: 10.1186/S12862-015-0351-Z  0.551
2015 Campo-Paysaa F, Jandzik D, Takio-Ogawa Y, Cattell MV, Neef HC, Langeland JA, Kuratani S, Medeiros DM, Mazan S, Kuraku S, Laudet V, Schubert M. Evolution of retinoic acid receptors in chordates: Insights from three lamprey species, Lampetra fluviatilis, Petromyzon marinus, and Lethenteron japonicum Evodevo. DOI: 10.1186/s13227-015-0016-4  0.476
2014 Pascual-Anaya J, Hirasawa T, Sato I, Kuraku S, Kuratani S. Comparative analysis of pleurodiran and cryptodiran turtle embryos depicts the molecular ground pattern of the turtle carapacial ridge. The International Journal of Developmental Biology. 58: 743-50. PMID 26154315 DOI: 10.1387/Ijdb.140296Jp  0.579
2014 Godard BG, Coolen M, Le Panse S, Gombault A, Ferreiro-Galve S, Laguerre L, Lagadec R, Wincker P, Poulain J, Da Silva C, Kuraku S, Carre W, Boutet A, Mazan S. Mechanisms of endoderm formation in a cartilaginous fish reveal ancestral and homoplastic traits in jawed vertebrates. Biology Open. 3: 1098-107. PMID 25361580 DOI: 10.1242/Bio.20148037  0.346
2014 Feiner N, Meyer A, Kuraku S. Evolution of the vertebrate Pax4/6 class of genes with focus on its novel member, the Pax10 gene. Genome Biology and Evolution. 6: 1635-51. PMID 24951566 DOI: 10.1093/Gbe/Evu135  0.821
2013 Feiner N, Murakami Y, Breithut L, Mazan S, Meyer A, Kuraku S. Saltatory evolution of the ectodermal neural cortex gene family at the vertebrate origin. Genome Biology and Evolution. 5: 1485-502. PMID 23843192 DOI: 10.1093/Gbe/Evt104  0.822
2013 Renz AJ, Meyer A, Kuraku S. Revealing less derived nature of cartilaginous fish genomes with their evolutionary time scale inferred with nuclear genes. Plos One. 8: e66400. PMID 23825540 DOI: 10.1371/Journal.Pone.0066400  0.603
2013 Kuraku S, Zmasek CM, Nishimura O, Katoh K. aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity. Nucleic Acids Research. 41: W22-8. PMID 23677614 DOI: 10.1093/Nar/Gkt389  0.412
2013 Wang Z, Pascual-Anaya J, Zadissa A, Li W, Niimura Y, Huang Z, Li C, White S, Xiong Z, Fang D, Wang B, Ming Y, Chen Y, Zheng Y, Kuraku S, et al. The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan. Nature Genetics. 45: 701-6. PMID 23624526 DOI: 10.1038/Ng.2615  0.671
2013 Amemiya CT, Alföldi J, Lee AP, Fan S, Philippe H, Maccallum I, Braasch I, Manousaki T, Schneider I, Rohner N, Organ C, Chalopin D, Smith JJ, Robinson M, Dorrington RA, ... ... Kuraku S, et al. The African coelacanth genome provides insights into tetrapod evolution. Nature. 496: 311-6. PMID 23598338 DOI: 10.1038/Nature12027  0.838
2013 Smith JJ, Kuraku S, Holt C, Sauka-Spengler T, Jiang N, Campbell MS, Yandell MD, Manousaki T, Meyer A, Bloom OE, Morgan JR, Buxbaum JD, Sachidanandam R, Sims C, Garruss AS, et al. Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution. Nature Genetics. 45: 415-21, 421e1-2. PMID 23435085 DOI: 10.1038/Ng.2568  0.815
2013 Fujimoto S, Oisi Y, Kuraku S, Ota KG, Kuratani S. Non-parsimonious evolution of hagfish Dlx genes. Bmc Evolutionary Biology. 13: 15. PMID 23331926 DOI: 10.1186/1471-2148-13-15  0.676
2013 Kuraku S. Impact of asymmetric gene repertoire between cyclostomes and gnathostomes. Seminars in Cell & Developmental Biology. 24: 119-27. PMID 23291292 DOI: 10.1016/J.Semcdb.2012.12.009  0.553
2013 Takechi M, Adachi N, Hirai T, Kuratani S, Kuraku S. The Dlx genes as clues to vertebrate genomics and craniofacial evolution. Seminars in Cell & Developmental Biology. 24: 110-8. PMID 23291259 DOI: 10.1016/J.Semcdb.2012.12.010  0.805
2013 Oisi Y, Ota KG, Kuraku S, Fujimoto S, Kuratani S. Craniofacial development of hagfishes and the evolution of vertebrates. Nature. 493: 175-80. PMID 23254938 DOI: 10.1038/Nature11794  0.613
2013 Xu B, Sundström G, Kuraku S, Lundell I, Larhammar D. Cloning and pharmacological characterization of the neuropeptide Y receptor Y5 in the sea lamprey, Petromyzon marinus. Peptides. 39: 64-70. PMID 23178200 DOI: 10.1016/J.Peptides.2012.11.007  0.3
2012 Matsubara K, Kuraku S, Tarui H, Nishimura O, Nishida C, Agata K, Kumazawa Y, Matsuda Y. Intra-genomic GC heterogeneity in sauropsids: evolutionary insights from cDNA mapping and GC(3) profiling in snake. Bmc Genomics. 13: 604. PMID 23140509 DOI: 10.1186/1471-2164-13-604  0.462
2012 Stuerner E, Kuraku S, Hochstrasser M, Kreft SG. Split-Doa10: a naturally split polytopic eukaryotic membrane protein generated by fission of a nuclear gene. Plos One. 7: e45194. PMID 23071509 DOI: 10.1371/Journal.Pone.0045194  0.323
2012 Freter S, Muta Y, O'Neill P, Vassilev VS, Kuraku S, Ladher RK. Pax2 modulates proliferation during specification of the otic and epibranchial placodes. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 241: 1716-28. PMID 22972769 DOI: 10.1002/Dvdy.23856  0.335
2012 Kuraku S, Qiu H, Meyer A. Horizontal transfers of Tc1 elements between teleost fishes and their vertebrate parasites, lampreys. Genome Biology and Evolution. 4: 929-36. PMID 22887124 DOI: 10.1093/Gbe/Evs069  0.757
2012 Kuraku S, Meyer A. Detection and phylogenetic assessment of conserved synteny derived from whole genome duplications. Methods in Molecular Biology (Clifton, N.J.). 855: 385-95. PMID 22407717 DOI: 10.1007/978-1-61779-582-4_14  0.588
2012 Nagashima H, Kuraku S, Uchida K, Kawashima-Ohya Y, Narita Y, Kuratani S. Body plan of turtles: an anatomical, developmental and evolutionary perspective. Anatomical Science International. 87: 1-13. PMID 22131042 DOI: 10.1007/S12565-011-0121-Y  0.585
2011 Manousaki T, Feiner N, Begemann G, Meyer A, Kuraku S. Co-orthology of Pax4 and Pax6 to the fly eyeless gene: molecular phylogenetic, comparative genomic, and embryological analyses. Evolution & Development. 13: 448-59. PMID 23016906 DOI: 10.1111/J.1525-142X.2011.00502.X  0.838
2011 Kuraku S, Kuratani S. Genome-wide detection of gene extinction in early mammalian evolution. Genome Biology and Evolution. 3: 1449-62. PMID 22094861 DOI: 10.1093/Gbe/Evr120  0.699
2011 Feiner N, Ericsson R, Meyer A, Kuraku S. Revisiting the origin of the vertebrate Hox14 by including its relict sarcopterygian members. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 316: 515-25. PMID 21815265 DOI: 10.1002/Jez.B.21426  0.783
2011 Kuraku S. Hox gene clusters of early vertebrates: do they serve as reliable markers for genome evolution? Genomics, Proteomics & Bioinformatics. 9: 97-103. PMID 21802046 DOI: 10.1016/S1672-0229(11)60012-0  0.383
2011 Dessimoz C, Zoller S, Manousaki T, Qiu H, Meyer A, Kuraku S. Comparative genomics approach to detecting split-coding regions in a low-coverage genome: Lessons from the chimaera Callorhinchus milii (Holocephali, Chondrichthyes) Briefings in Bioinformatics. 12: 474-484. PMID 21712341 DOI: 10.1093/Bib/Bbr038  0.818
2011 Qiu H, Hildebrand F, Kuraku S, Meyer A. Unresolved orthology and peculiar coding sequence properties of lamprey genes: the KCNA gene family as test case. Bmc Genomics. 12: 325. PMID 21699680 DOI: 10.1186/1471-2164-12-325  0.822
2011 Sugahara F, Aota S, Kuraku S, Murakami Y, Takio-Ogawa Y, Hirano S, Kuratani S. Involvement of Hedgehog and FGF signalling in the lamprey telencephalon: evolution of regionalization and dorsoventral patterning of the vertebrate forebrain. Development (Cambridge, England). 138: 1217-26. PMID 21343370 DOI: 10.1242/Dev.059360  0.739
2011 Kuratani S, Kuraku S, Nagashima H. Evolutionary developmental perspective for the origin of turtles: the folding theory for the shell based on the developmental nature of the carapacial ridge. Evolution & Development. 13: 1-14. PMID 21210938 DOI: 10.1111/J.1525-142X.2010.00451.X  0.578
2011 Renz AJ, Gunter HM, Fischer JM, Qiu H, Meyer A, Kuraku S. Ancestral and derived attributes of the dlx gene repertoire, cluster structure and expression patterns in an African cichlid fish. Evodevo. 2: 1. PMID 21205289 DOI: 10.1186/2041-9139-2-1  0.769
2011 Kusakabe R, Kuraku S, Kuratani S. Expression and interaction of muscle-related genes in the lamprey imply the evolutionary scenario for vertebrate skeletal muscle, in association with the acquisition of the neck and fins. Developmental Biology. 350: 217-27. PMID 21035440 DOI: 10.1016/J.Ydbio.2010.10.029  0.575
2011 Kuraku S, Meyer A. Whole Genome Duplications and the Radiation of Vertebrates Evolution After Gene Duplication. 299-311. DOI: 10.1002/9780470619902.ch16  0.442
2010 Kuraku S. Palaeophylogenomics of the vertebrate ancestor--impact of hidden paralogy on hagfish and lamprey gene phylogeny. Integrative and Comparative Biology. 50: 124-9. PMID 21558193 DOI: 10.1093/Icb/Icq044  0.529
2010 Elmer KR, Fan S, Gunter HM, Jones JC, Boekhoff S, Kuraku S, Meyer A. Rapid evolution and selection inferred from the transcriptomes of sympatric crater lake cichlid fishes. Molecular Ecology. 19: 197-211. PMID 20331780 DOI: 10.1111/J.1365-294X.2009.04488.X  0.787
2010 Kuraku S, Takio Y, Sugahara F, Takechi M, Kuratani S. Evolution of oropharyngeal patterning mechanisms involving Dlx and endothelins in vertebrates. Developmental Biology. 341: 315-23. PMID 20171204 DOI: 10.1016/J.Ydbio.2010.02.013  0.664
2010 Kokubo N, Matsuura M, Onimaru K, Tiecke E, Kuraku S, Kuratani S, Tanaka M. Mechanisms of heart development in the Japanese lamprey, Lethenteron japonicum. Evolution & Development. 12: 34-44. PMID 20156281 DOI: 10.1111/J.1525-142X.2009.00389.X  0.769
2010 Kusakabe R, Kuraku S, Kuratani S. Evolution of vertebrate skeletal myogenesis: Insights from the cyclostome lamprey Developmental Biology. 344: 532-533. DOI: 10.1016/J.Ydbio.2010.05.401  0.591
2009 Feiner N, Begemann G, Renz AJ, Meyer A, Kuraku S. The origin of bmp16, a novel Bmp2/4 relative, retained in teleost fish genomes. Bmc Evolutionary Biology. 9: 277. PMID 19951429 DOI: 10.1186/1471-2148-9-277  0.825
2009 Ogino Y, Katoh H, Kuraku S, Yamada G. Evolutionary history and functional characterization of androgen receptor genes in jawed vertebrates. Endocrinology. 150: 5415-27. PMID 19819965 DOI: 10.1210/En.2009-0523  0.465
2009 Kuraku S, Meyer A. The evolution and maintenance of Hox gene clusters in vertebrates and the teleost-specific genome duplication. The International Journal of Developmental Biology. 53: 765-73. PMID 19557682 DOI: 10.1387/Ijdb.072533Km  0.565
2009 Kuraku S, Meyer A, Kuratani S. Timing of genome duplications relative to the origin of the vertebrates: did cyclostomes diverge before or after? Molecular Biology and Evolution. 26: 47-59. PMID 18842688 DOI: 10.1093/Molbev/Msn222  0.745
2009 Kusakabe R, Kuraku S, Kuratani S, Inoue K. 15-P007 Evolution of vertebrate myogenesis, with special reference to the morphological variety of skeletal muscles Mechanisms of Development. 126: S249. DOI: 10.1016/J.Mod.2009.06.651  0.522
2008 Kuraku S. Insights into cyclostome phylogenomics: pre-2R or post-2R. Zoological Science. 25: 960-8. PMID 19267631 DOI: 10.2108/Zsj.25.960  0.497
2008 Kuraku S, Meyer A. Genomic analysis of cichlid fish 'natural mutants'. Current Opinion in Genetics & Development. 18: 551-8. PMID 19095433 DOI: 10.1016/J.Gde.2008.11.002  0.553
2008 Matsuura M, Nishihara H, Onimaru K, Kokubo N, Kuraku S, Kusakabe R, Okada N, Kuratani S, Tanaka M. Identification of four Engrailed genes in the Japanese lamprey, Lethenteron japonicum. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 237: 1581-9. PMID 18488997 DOI: 10.1002/Dvdy.21552  0.819
2008 Kuraku S, Takio Y, Tamura K, Aono H, Meyer A, Kuratani S. Noncanonical role of Hox14 revealed by its expression patterns in lamprey and shark. Proceedings of the National Academy of Sciences of the United States of America. 105: 6679-83. PMID 18448683 DOI: 10.1073/Pnas.0710947105  0.699
2007 Tiecke E, Matsuura M, Kokubo N, Kuraku S, Kusakabe R, Kuratani S, Tanaka M. Identification and developmental expression of two Tbx1/10-related genes in the agnathan Lethenteron japonicum. Development Genes and Evolution. 217: 691-7. PMID 17874129 DOI: 10.1007/S00427-007-0181-0  0.57
2007 Takio Y, Kuraku S, Murakami Y, Pasqualetti M, Rijli FM, Narita Y, Kuratani S, Kusakabe R. Hox gene expression patterns in Lethenteron japonicum embryos--insights into the evolution of the vertebrate Hox code. Developmental Biology. 308: 606-20. PMID 17560975 DOI: 10.1016/J.Ydbio.2007.05.009  0.791
2007 Nagashima H, Kuraku S, Uchida K, Ohya YK, Narita Y, Kuratani S. On the carapacial ridge in turtle embryos: its developmental origin, function and the chelonian body plan. Development (Cambridge, England). 134: 2219-26. PMID 17507399 DOI: 10.1242/Dev.002618  0.57
2007 Ota KG, Kuraku S, Kuratani S. Hagfish embryology with reference to the evolution of the neural crest. Nature. 446: 672-5. PMID 17377535 DOI: 10.1038/Nature05633  0.614
2006 Kuraku S, Kuratani S. Time scale for cyclostome evolution inferred with a phylogenetic diagnosis of hagfish and lamprey cDNA sequences. Zoological Science. 23: 1053-64. PMID 17261918 DOI: 10.2108/Zsj.23.1053  0.614
2006 Ohya YK, Usuda R, Kuraku S, Nagashima H, Kuratani S. Unique features of Myf-5 in turtles: nucleotide deletion, alternative splicing, and unusual expression pattern. Evolution & Development. 8: 415-23. PMID 16925677 DOI: 10.1111/J.1525-142X.2006.00115.X  0.612
2006 Kajiwara M, Kuraku S, Kurokawa T, Kato K, Toda S, Hirose H, Takahashi S, Shibata Y, Iguchi T, Matsumoto T, Miyata T, Miura T, Takahashi Y. Tissue preferential expression of estrogen receptor gene in the marine snail, Thais clavigera. General and Comparative Endocrinology. 148: 315-26. PMID 16782100 DOI: 10.1016/J.Ygcen.2006.03.016  0.587
2006 Kuraku S, Ishijima J, Nishida-Umehara C, Agata K, Kuratani S, Matsuda Y. cDNA-based gene mapping and GC3 profiling in the soft-shelled turtle suggest a chromosomal size-dependent GC bias shared by sauropsids. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 14: 187-202. PMID 16544192 DOI: 10.1007/S10577-006-1035-8  0.649
2005 Funayama N, Nakatsukasa M, Kuraku S, Takechi K, Dohi M, Iwabe N, Miyata T, Agata K. Isolation of Ef silicatein and Ef lectin as molecular markers for sclerocytes and cells involved in innate immunity in the freshwater sponge Ephydatia fluviatilis. Zoological Science. 22: 1113-22. PMID 16286723 DOI: 10.2108/Zsj.22.1113  0.767
2005 Ohya YK, Kuraku S, Kuratani S. Hox code in embryos of Chinese soft-shelled turtle Pelodiscus sinensis correlates with the evolutionary innovation in the turtle. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 304: 107-18. PMID 15643629 DOI: 10.1002/Jez.B.21027  0.604
2005 Kuraku S, Usuda R, Kuratani S. Comprehensive survey of carapacial ridge-specific genes in turtle implies co-option of some regulatory genes in carapace evolution. Evolution & Development. 7: 3-17. PMID 15642085 DOI: 10.1111/J.1525-142X.2005.05002.X  0.644
2005 Nagashima H, Uchida K, Yamamoto K, Kuraku S, Usuda R, Kuratani S. Turtle-chicken chimera: an experimental approach to understanding evolutionary innovation in the turtle. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 232: 149-61. PMID 15580555 DOI: 10.1002/Dvdy.20235  0.57
2004 Takio Y, Pasqualetti M, Kuraku S, Hirano S, Rijli FM, Kuratani S. Evolutionary biology: lamprey Hox genes and the evolution of jaws. Nature. 429: 1 p following 262. PMID 15154395 DOI: 10.1038/Nature02616  0.636
2004 Kikugawa K, Katoh K, Kuraku S, Sakurai H, Ishida O, Iwabe N, Miyata T. Basal jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes. Bmc Biology. 2: 3. PMID 15070407 DOI: 10.1186/1741-7007-2-3  0.79
2003 Uchida K, Murakami Y, Kuraku S, Hirano S, Kuratani S. Development of the adenohypophysis in the lamprey: evolution of epigenetic patterning programs in organogenesis. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 300: 32-47. PMID 14984033 DOI: 10.1002/Jez.B.44  0.779
2002 Kuratani S, Kuraku S, Murakami Y. Lamprey as an evo-devo model: lessons from comparative embryology and molecular phylogenetics. Genesis (New York, N.Y. : 2000). 34: 175-83. PMID 12395382 DOI: 10.1002/Gene.10142  0.78
2000 Kuraku S, Hoshiyama D, Katoh K, Suga H, Miyata T. Monophyly of lampreys and hagfishes supported by nuclear DNA-coded genes. Journal of Molecular Evolution. 49: 729-35. PMID 10594174 DOI: 10.1007/Pl00006595  0.392
1999 Suga H, Hoshiyama D, Kuraku S, Katoh K, Kubokawa K, Miyata T. Protein tyrosine kinase cDNAs from amphioxus, hagfish, and lamprey: isoform duplications around the divergence of cyclostomes and gnathostomes. Journal of Molecular Evolution. 49: 601-8. PMID 10552041 DOI: 10.1007/Pl00006581  0.448
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