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Anirvan M. Sengupta - Publications

Affiliations: 
Physics and Astronomy Rutgers University, New Brunswick, New Brunswick, NJ, United States 
Area:
Biological Physics
Website:
http://cgisvr.physics.rutgers.edu/cgi-bin/physdb/genpip.pl?SenguptaA
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Nagaraj VH, Greene JM, Sengupta AM, Sontag ED. Translation inhibition and resource balance in the TX-TL cell-free gene expression system. Synthetic Biology (Oxford, England). 2: ysx005. PMID 32995506 DOI: 10.1093/Synbio/Ysx005  0.311
2015 Zepeda-Mendoza CJ, Mukhopadhyay S, Wong ES, Harder N, Splinter E, de Wit E, Eckersley-Maslin MA, Ried T, Eils R, Rohr K, Mills A, de Laat W, Flicek P, Sengupta AM, Spector DL. Quantitative analysis of chromatin interaction changes upon a 4.3 Mb deletion at mouse 4E2. Bmc Genomics. 16: 982. PMID 26589460 DOI: 10.1186/S12864-015-2137-5  0.37
2014 Nagaraj VH, Mukhopadhyay S, Dayarian A, Sengupta AM. Breaking an epigenetic chromatin switch: curious features of hysteresis in Saccharomyces cerevisiae telomeric silencing. Plos One. 9: e113516. PMID 25536038 DOI: 10.1371/Journal.Pone.0113516  0.751
2014 Ramezanali M, Sengupta A. Long Distance Chromatin Interactions Biophysical Journal. 106: 77a-78a. DOI: 10.1016/J.Bpj.2013.11.504  0.308
2013 Mukhopadhyay S, Sengupta AM. The role of multiple marks in epigenetic silencing and the emergence of a stable bivalent chromatin state. Plos Computational Biology. 9: e1003121. PMID 23874171 DOI: 10.1371/Journal.Pcbi.1003121  0.378
2013 Dayarian A, Sengupta AM. Titration and hysteresis in epigenetic chromatin silencing. Physical Biology. 10: 036005. PMID 23588040 DOI: 10.1088/1478-3975/10/3/036005  0.76
2012 Kulaeva OI, Zheng G, Polikanov YS, Colasanti AV, Clauvelin N, Mukhopadhyay S, Sengupta AM, Studitsky VM, Olson WK. Internucleosomal interactions mediated by histone tails allow distant communication in chromatin. The Journal of Biological Chemistry. 287: 20248-57. PMID 22518845 DOI: 10.1074/Jbc.M111.333104  0.342
2011 Mehta P, Schwab DJ, Sengupta AM. Statistical Mechanics of Transcription-Factor Binding Site Discovery Using Hidden Markov Models. Journal of Statistical Physics. 142: 1187-1205. PMID 22851788 DOI: 10.1007/S10955-010-0102-X  0.396
2011 Mukhopadhyay S, Schedl P, Studitsky VM, Sengupta AM. Theoretical analysis of the role of chromatin interactions in long-range action of enhancers and insulators. Proceedings of the National Academy of Sciences of the United States of America. 108: 19919-24. PMID 22123989 DOI: 10.1073/Pnas.1103845108  0.325
2011 Gelfand B, Mead J, Bruning A, Apostolopoulos N, Tadigotla V, Nagaraj V, Sengupta AM, Vershon AK. Regulated antisense transcription controls expression of cell-type-specific genes in yeast. Molecular and Cellular Biology. 31: 1701-9. PMID 21300780 DOI: 10.1128/Mcb.01071-10  0.395
2010 Mukhopadhyay S, Nagaraj VH, Sengupta AM. Locus dependence in epigenetic chromatin silencing. Bio Systems. 102: 49-54. PMID 20655355 DOI: 10.1016/J.Biosystems.2010.07.012  0.331
2010 Dayarian A, Michael TP, Sengupta AM. SOPRA: Scaffolding algorithm for paired reads via statistical optimization. Bmc Bioinformatics. 11: 345. PMID 20576136 DOI: 10.1186/1471-2105-11-345  0.726
2009 Drawid A, Gupta N, Nagaraj VH, Gélinas C, Sengupta AM. OHMM: a Hidden Markov Model accurately predicting the occupancy of a transcription factor with a self-overlapping binding motif. Bmc Bioinformatics. 10: 208. PMID 19583839 DOI: 10.1186/1471-2105-10-208  0.748
2009 David-Rus D, Mukhopadhyay S, Lebowitz JL, Sengupta AM. Inheritance of epigenetic chromatin silencing. Journal of Theoretical Biology. 258: 112-20. PMID 19174167 DOI: 10.1016/J.Jtbi.2008.12.021  0.36
2009 Dayarian A, Chaves M, Sontag ED, Sengupta AM. Shape, size, and robustness: feasible regions in the parameter space of biochemical networks. Plos Computational Biology. 5: e1000256. PMID 19119410 DOI: 10.1371/Journal.Pcbi.1000256  0.73
2009 Chaves M, Sengupta A, Sontag ED. Geometry and topology of parameter space: investigating measures of robustness in regulatory networks. Journal of Mathematical Biology. 59: 315-58. PMID 18987858 DOI: 10.1007/S00285-008-0230-Y  0.32
2008 Nagaraj VH, O'Flanagan RA, Sengupta AM. Better estimation of protein-DNA interaction parameters improve prediction of functional sites. Bmc Biotechnology. 8: 94. PMID 19105805 DOI: 10.1186/1472-6750-8-94  0.758
2008 Gupta N, Delrow J, Drawid A, Sengupta AM, Fan G, Gélinas C. Repression of B-cell linker (BLNK) and B-cell adaptor for phosphoinositide 3-kinase (BCAP) is important for lymphocyte transformation by rel proteins. Cancer Research. 68: 808-14. PMID 18245482 DOI: 10.1158/0008-5472.Can-07-3169  0.729
2007 Sedighi M, Sengupta AM. Epigenetic chromatin silencing: bistability and front propagation. Physical Biology. 4: 246-55. PMID 17991991 DOI: 10.1088/1478-3975/4/4/002  0.672
2006 Djordjevic M, Sengupta AM. Quantitative modeling and data analysis of SELEX experiments. Physical Biology. 3: 13-28. PMID 16582458 DOI: 10.1088/1478-3975/3/1/002  0.362
2006 Phadtare S, Tadigotla V, Shin WH, Sengupta A, Severinov K. Analysis of Escherichia coli global gene expression profiles in response to overexpression and deletion of CspC and CspE. Journal of Bacteriology. 188: 2521-7. PMID 16547039 DOI: 10.1128/Jb.188.7.2521-2527.2006  0.347
2006 Tadigotla VR, O Maoiléidigh D, Sengupta AM, Epshtein V, Ebright RH, Nudler E, Ruckenstein AE. Thermodynamic and kinetic modeling of transcriptional pausing. Proceedings of the National Academy of Sciences of the United States of America. 103: 4439-44. PMID 16537373 DOI: 10.1073/Pnas.0600508103  0.311
2005 O'Flanagan RA, Paillard G, Lavery R, Sengupta AM. Non-additivity in protein-DNA binding. Bioinformatics (Oxford, England). 21: 2254-63. PMID 15746285 DOI: 10.1093/bioinformatics/bti361  0.761
2005 Roma DM, O'Flanagan RA, Ruckenstein AE, Sengupta AM, Mukhopadhyay R. Optimal path to epigenetic switching. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 71: 011902. PMID 15697625 DOI: 10.1103/Physreve.71.011902  0.721
2004 Mathias JR, Hanlon SE, O'Flanagan RA, Sengupta AM, Vershon AK. Repression of the yeast HO gene by the MATalpha2 and MATa1 homeodomain proteins. Nucleic Acids Research. 32: 6469-78. PMID 15598821 DOI: 10.1093/Nar/Gkh985  0.753
2004 Nagaraj VH, O'Flanagan RA, Bruning AR, Mathias JR, Vershon AK, Sengupta AM. Combined analysis of expression data and transcription factor binding sites in the yeast genome. Bmc Genomics. 5: 59. PMID 15331021 DOI: 10.1186/1471-2164-5-59  0.755
2003 Djordjevic M, Sengupta AM, Shraiman BI. A biophysical approach to transcription factor binding site discovery. Genome Research. 13: 2381-90. PMID 14597652 DOI: 10.1101/Gr.1271603  0.45
2002 Sengupta AM, Djordjevic M, Shraiman BI. Specificity and robustness in transcription control networks. Proceedings of the National Academy of Sciences of the United States of America. 99: 2072-7. PMID 11854503 DOI: 10.1073/Pnas.022388499  0.441
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