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Guruprasad Ananda - Publications

Affiliations: 
2006-2012 Pennsylvania State University, State College, PA, United States 
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Milind N, Preuss C, Haber A, Ananda G, Mukherjee S, John C, Shapley S, Logsdon BA, Crane PK, Carter GW. Transcriptomic stratification of late-onset Alzheimer's cases reveals novel genetic modifiers of disease pathology. Plos Genetics. 16: e1008775. PMID 32492070 DOI: 10.1371/Journal.Pgen.1008775  0.446
2019 Selvam P, Hsiao MC, Omerza G, Bergeron D, Rowe S, Uvalic J, Soucy M, Peracchio M, Burns S, Meyers B, Prego M, Nie Q, Ananda G, Chandok H, Kelly K, et al. Mutation Yield of a Custom 212-Gene Next-Generation Sequencing Panel for Solid Tumors: Clinical Experience of the First 260 Cases Tested Using the JAX ActionSeq™ Assay. Molecular Diagnosis & Therapy. PMID 31754995 DOI: 10.1007/S40291-019-00435-9  0.427
2019 Woo XY, Srivastava A, Graber JH, Yadav V, Sarsani VK, Simons A, Beane G, Grubb S, Ananda G, Liu R, Stafford G, Chuang JH, Airhart SD, Karuturi RKM, George J, et al. Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): challenges and guidelines. Bmc Medical Genomics. 12: 92. PMID 31262303 DOI: 10.1186/S12920-019-0551-2  0.531
2019 Sarsani VK, Raghupathy N, Fiddes IT, Armstrong J, Thibaud-Nissen F, Zinder O, Bolisetty M, Howe K, Hinerfeld D, Ruan X, Rowe L, Barter M, Ananda G, Paten B, Weinstock GM, et al. The Genome of C57BL/6J "Eve", the Mother of the Laboratory Mouse Genome Reference Strain. G3 (Bethesda, Md.). PMID 30996023 DOI: 10.1534/G3.119.400071  0.504
2019 Sisson BA, Uvalic J, Kelly K, Selvam P, Hesse AN, Ananda G, Chandok H, Bergeron D, Holinka L, Reddi HV. Technical and Regulatory Considerations for Taking Liquid Biopsy to the Clinic: Validation of the JAX PlasmaMonitor Assay. Biomarker Insights. 14: 1177271919826545. PMID 30745794 DOI: 10.1177/1177271919826545  0.333
2019 Woo XY, Srivastava A, Graber JH, Yadav V, Sarsani VK, Simons A, Beane G, Grubb S, Ananda G, Stafford G, Chuang JH, Airhart SD, Karuturi RK, George J, Bult CJ. Abstract 1075: Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): Challenges and guidelines Cancer Research. 79: 1075-1075. DOI: 10.1158/1538-7445.Am2019-1075  0.513
2018 Baker CL, Walker M, Arat S, Ananda G, Petkova P, Powers NR, Tian H, Spruce C, Ji B, Rausch D, Choi K, Petkov PM, Carter GW, Paigen K. Tissue-Specific Regulation of the Mouse Epigenome. Genetics. PMID 30593494 DOI: 10.1534/Genetics.118.301697  0.324
2018 Wang X, Philip VM, Ananda G, White CC, Malhotra A, Michalski PJ, Karuturi KRM, Chintalapudi SR, Acklin C, Sasner M, Bennett DA, De Jager PL, Howell GR, Carter GW. A Bayesian Framework for Generalized Linear Mixed Modeling Identifies New Candidate Loci for Late-Onset Alzheimer's Disease. Genetics. PMID 29507048 DOI: 10.1534/Genetics.117.300673  0.515
2018 Kelly KJ, Uvalic J, Bergeron D, Burns S, Soucy M, Ananda G, Hesse A, Selvam PP, Reddi HV. Abstract 3428: Development and validation of the plasma monitor test system Cancer Research. 78: 3428-3428. DOI: 10.1158/1538-7445.Am2018-3428  0.356
2017 Helm S, Spotlow V, Ras A, Kelly K, Ananda G, Patterson S, Reddi HV. Abstract 757: Development and validation of the ActionSeqTMtest system Cancer Research. 77: 757-757. DOI: 10.1158/1538-7445.Am2017-757  0.374
2017 Woo XY, Yadav V, Simons A, Srivastava A, Ananda G, Sarsani VK, Liu R, Stafford G, Graber J, Karuturi K, Airhart S, George J, Bult C. Abstract 3842: Comprehensive genomic analysis demonstrates concordance of PDX models and patient tumor cohorts Cancer Research. 77: 3842-3842. DOI: 10.1158/1538-7445.Am2017-3842  0.446
2017 Wang X, Preuss C, Philip V, Ananda G, Acklin C, Karuturi KM, Sasner M, Howell G, Carter GW. Novel Candidate Loci For Late-Onset Alzheimer’S Disease From Bayesian Mixed Modeling Of Whole-Genome And Whole-Exome Sequencing Alzheimers & Dementia. 13: 1490. DOI: 10.1016/J.Jalz.2017.07.574  0.561
2016 Dillon JL, Mockus SM, Ananda G, Spotlow V, Wells WA, Tsongalis GJ, Marotti JD. Somatic gene mutation analysis of triple negative breast cancers. Breast (Edinburgh, Scotland). PMID 27397723 DOI: 10.1016/J.Breast.2016.06.018  0.367
2016 Tafe LJ, Muller KE, Ananda G, Mitchell T, Spotlow V, Patterson SE, Tsongalis GJ, Mockus SM. Molecular Genetic Analysis of Ovarian Brenner Tumors and Associated Mucinous Epithelial Neoplasms: High Variant Concordance and Identification of Mutually Exclusive RAS Driver Mutations and MYC Amplification. The American Journal of Pathology. PMID 26797085 DOI: 10.1016/J.Ajpath.2015.11.008  0.373
2016 Ras A, Helm S, Kelly K, Spotlow V, Ananda G, Tsongalis G. Abstract 3634: Simultaneous isolation of genomic DNA and total RNA using the Qiagen AllPrep® method Cancer Research. 76: 3634-3634. DOI: 10.1158/1538-7445.Am2016-3634  0.41
2016 Helm S, Ras A, Spotlow V, Kelly K, Mockus S, Statz C, Ananda G, Malcolm J, Tsongalis GJ. Abstract 3630: Validation of the Archer FusionPlex solid tumor panel in the JAX cancer treatment profileTM Cancer Research. 76: 3630-3630. DOI: 10.1158/1538-7445.Am2016-3630  0.325
2015 Fairfield H, Srivastava A, Ananda G, Liu R, Kircher M, Lakshminarayana A, Harris BS, Karst SY, Dionne LA, Kane CC, Curtain M, Berry ML, Ward-Bailey PF, Greenstein I, Byers C, et al. Exome sequencing reveals pathogenic mutations in 91 strains of mice with Mendelian disorders. Genome Research. 25: 948-57. PMID 25917818 DOI: 10.1101/Gr.186882.114  0.516
2015 Fungtammasan A, Ananda G, Hile SE, Su MS, Sun C, Harris R, Medvedev P, Eckert K, Makova KD. Accurate typing of short tandem repeats from genome-wide sequencing data and its applications. Genome Research. 25: 736-49. PMID 25823460 DOI: 10.1101/Gr.185892.114  0.739
2015 Ananda G, Mockus S, Lundquist M, Spotlow V, Simons A, Mitchell T, Stafford G, Philip V, Stearns T, Srivastava A, Barter M, Rowe L, Malcolm J, Bult C, Karuturi RK, et al. Development and validation of the JAX Cancer Treatment Profile™ for detection of clinically actionable mutations in solid tumors. Experimental and Molecular Pathology. 98: 106-12. PMID 25562415 DOI: 10.1016/J.Yexmp.2014.12.009  0.339
2015 Patterson SE, Potter CS, Spotlow V, Mitchell T, Liu R, Ananda G, Tsongalis GJ, Tafe LJ, Mockus SM. Potential driver mutations in ovarian Brenner tumors. Journal of Clinical Oncology. 33: e22087-e22087. DOI: 10.1200/Jco.2015.33.15_Suppl.E22087  0.371
2015 Potter CS, Mockus SM, Patterson SE, Spotlow V, Mitchell T, Liu R, Ananda G, York EB, Tsongalis GJ, Tafe LJ. Somatic mutation profiling in ovarian Brenner and associated mucinous tumors. Journal of Clinical Oncology. 33: e16585-e16585. DOI: 10.1200/Jco.2015.33.15_Suppl.E16585  0.448
2015 Patterson SE, Potter CS, Stafford GA, Woo XY, Spotlow V, Mitchell T, Liu R, Ananda G, Tsongalis GJ, Mockus SM. Solid tumor profiling via next-generation sequencing to identify tumor-specific actionable variants. Journal of Clinical Oncology. 33: 1539-1539. DOI: 10.1200/Jco.2015.33.15_Suppl.1539  0.451
2015 Mockus SM, Potter CS, Stafford GA, Ananda G, Hinerfeld D, Tsongalis GJ. Abstract 73: Targeting KDR mutations in lung adenocarcinoma Cancer Research. 75: 73-73. DOI: 10.1158/1538-7445.Am2015-73  0.34
2014 Ananda G, Takemon Y, Hinerfeld D, Korstanje R. Whole-genome sequence of the C57L/J mouse inbred strain. G3 (Bethesda, Md.). 4: 1689-92. PMID 25053706 DOI: 10.1534/G3.114.012997  0.494
2014 Ananda G, Hile SE, Breski A, Wang Y, Kelkar Y, Makova KD, Eckert KA. Microsatellite interruptions stabilize primate genomes and exist as population-specific single nucleotide polymorphisms within individual human genomes. Plos Genetics. 10: e1004498. PMID 25033203 DOI: 10.1371/Journal.Pgen.1004498  0.74
2013 Kuruppumullage Don P, Ananda G, Chiaromonte F, Makova KD. Segmenting the human genome based on states of neutral genetic divergence. Proceedings of the National Academy of Sciences of the United States of America. 110: 14699-704. PMID 23959903 DOI: 10.1073/Pnas.1221792110  0.717
2013 Montgomery SB, Goode DL, Kvikstad E, Albers CA, Zhang ZD, Mu XJ, Ananda G, Howie B, Karczewski KJ, Smith KS, Anaya V, Richardson R, Davis J, MacArthur DG, et al. The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes. Genome Research. 23: 749-61. PMID 23478400 DOI: 10.1101/Gr.148718.112  0.734
2013 Baptiste BA, Ananda G, Strubczewski N, Lutzkanin A, Khoo SJ, Srikanth A, Kim N, Makova KD, Krasilnikova MM, Eckert KA. Mature microsatellites: mechanisms underlying dinucleotide microsatellite mutational biases in human cells. G3 (Bethesda, Md.). 3: 451-63. PMID 23450065 DOI: 10.1534/G3.112.005173  0.686
2013 Ananda G, Walsh E, Jacob KD, Krasilnikova M, Eckert KA, Chiaromonte F, Makova KD. Distinct mutational behaviors differentiate short tandem repeats from microsatellites in the human genome. Genome Biology and Evolution. 5: 606-20. PMID 23241442 DOI: 10.1093/Gbe/Evs116  0.713
2011 Ananda G, Chiaromonte F, Makova KD. A genome-wide view of mutation rate co-variation using multivariate analyses. Genome Biology. 12: R27. PMID 21426544 DOI: 10.1186/Gb-2011-12-3-R27  0.713
2010 Blankenberg D, Von Kuster G, Coraor N, Ananda G, Lazarus R, Mangan M, Nekrutenko A, Taylor J. Galaxy: a web-based genome analysis tool for experimentalists. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit 19.10.1-21. PMID 20069535 DOI: 10.1002/0471142727.Mb1910S89  0.431
2009 Kosakovsky Pond S, Wadhawan S, Chiaromonte F, Ananda G, Chung WY, Taylor J, Nekrutenko A. Windshield splatter analysis with the Galaxy metagenomic pipeline. Genome Research. 19: 2144-53. PMID 19819906 DOI: 10.1101/Gr.094508.109  0.324
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