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Paul W. Huber - Publications

Affiliations: 
Chemistry and Biochemistry University of Notre Dame, Notre Dame, IN, United States 
Area:
Molecular and Cell Biology, Structural Biology
Website:
http://chemistry.nd.edu/faculty/detail/phuber/

38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zhang Z, Dubiak KM, Huber PW, Dovichi NJ. Miniaturized Filter-Aided Sample Preparation (MICRO-FASP) Method for High Throughput, Ultrasensitive Proteomics Sample Preparation Reveals Proteome Asymmetry in Embryos. Analytical Chemistry. PMID 32125139 DOI: 10.1021/Acs.Analchem.0C00470  0.321
2019 Wang M, Dubiak K, Zhang Z, Huber PW, Chen DDY, Dovichi NJ. MALDI-imaging of early stage Xenopus laevis embryos. Talanta. 204: 138-144. PMID 31357275 DOI: 10.1016/J.Talanta.2019.05.060  0.311
2019 Bertke MM, Dubiak KM, Cronin L, Zeng E, Huber PW. A deficiency in SUMOylation activity disrupts multiple pathways leading to neural tube and heart defects in Xenopus embryos. Bmc Genomics. 20: 386. PMID 31101013 DOI: 10.1186/S12864-019-5773-3  0.739
2017 Peuchen EH, Cox OF, Sun L, Hebert AS, Coon JJ, Champion MM, Dovichi NJ, Huber PW. Phosphorylation Dynamics Dominate the Regulated Proteome during Early Xenopus Development. Scientific Reports. 7: 15647. PMID 29142207 DOI: 10.1038/S41598-017-15936-Y  0.367
2016 Sun L, Dubiak KM, Peuchen EH, Zhang Z, Zhu G, Huber PW, Dovichi NJ. Single cell proteomics using frog (Xenopus laevis) blastomeres isolated from early stage embryos, which form a geometric progression in protein content. Analytical Chemistry. PMID 27314579 DOI: 10.1021/Acs.Analchem.6B01921  0.353
2015 Sun L, Champion MM, Huber PW, Dovichi NJ. Proteomics of Xenopus development. Molecular Human Reproduction. PMID 26396253 DOI: 10.1093/Molehr/Gav052  0.378
2015 Lambert LJ, Miller MJ, Huber PW. Tetrahydrofuranyl and tetrahydropyranyl protection of amino acid side-chains enables synthesis of a hydroxamate-containing aminoacylated tRNA. Organic & Biomolecular Chemistry. 13: 2341-9. PMID 25562392 DOI: 10.1039/C4Ob02212B  0.331
2014 Malik MQ, Bertke MM, Huber PW. Small ubiquitin-like modifier (SUMO)-mediated repression of the Xenopus Oocyte 5 S rRNA genes. The Journal of Biological Chemistry. 289: 35468-81. PMID 25368327 DOI: 10.1074/Jbc.M114.609123  0.709
2014 Sun L, Bertke MM, Champion MM, Zhu G, Huber PW, Dovichi NJ. Quantitative proteomics of Xenopus laevis embryos: expression kinetics of nearly 4000 proteins during early development. Scientific Reports. 4: 4365. PMID 24626130 DOI: 10.1038/Srep04365  0.737
2013 Snedden DD, Bertke MM, Vernon D, Huber PW. RNA localization in Xenopus oocytes uses a core group of trans-acting factors irrespective of destination. Rna (New York, N.Y.). 19: 889-95. PMID 23645708 DOI: 10.1261/Rna.038232.113  0.753
2011 Scripture JB, Huber PW. Binding site for Xenopus ribosomal protein L5 and accompanying structural changes in 5S rRNA. Biochemistry. 50: 3827-39. PMID 21446704 DOI: 10.1021/Bi200286E  0.438
2010 Huber PW, Zhao WM. Detection of protein-RNA complexes in Xenopus oocytes. Methods (San Diego, Calif.). 51: 82-6. PMID 20093187 DOI: 10.1016/J.Ymeth.2010.01.011  0.631
2009 Kroll TT, Swenson LB, Hartland EI, Snedden DD, Goodson HV, Huber PW. Interactions of 40LoVe within the ribonucleoprotein complex that forms on the localization element of Xenopus Vg1 mRNA. Mechanisms of Development. 126: 523-38. PMID 19345262 DOI: 10.1016/J.Mod.2009.03.007  0.702
2008 Gellett AM, Huber PW, Higgins PJ. Synthesis of the unnatural amino acid N-N-(ferrocene-1-acetyl)-l-lysine: a novel organometallic nuclease. Journal of Organometallic Chemistry. 693: 2959-2962. PMID 19255618 DOI: 10.1016/J.Jorganchem.2008.06.012  0.598
2008 Kolev NG, Hartland EI, Huber PW. A manganese-dependent ribozyme in the 3'-untranslated region of Xenopus Vg1 mRNA. Nucleic Acids Research. 36: 5530-9. PMID 18753150 DOI: 10.1093/Nar/Gkn530  0.728
2004 Ghose R, Malik M, Huber PW. Restricted specificity of Xenopus TFIIIA for transcription of somatic 5S rRNA genes. Molecular and Cellular Biology. 24: 2467-77. PMID 14993284 DOI: 10.1128/Mcb.24.6.2467-2477.2004  0.754
2003 DiNitto JP, Huber PW. Mutual induced fit binding of Xenopus ribosomal protein L5 to 5S rRNA. Journal of Molecular Biology. 330: 979-92. PMID 12860121 DOI: 10.1016/S0022-2836(03)00685-5  0.76
2003 Kolev NG, Huber PW. VgRBP71 stimulates cleavage at a polyadenylation signal in Vg1 mRNA, resulting in the removal of a cis-acting element that represses translation. Molecular Cell. 11: 745-55. PMID 12667456 DOI: 10.1016/S1097-2765(03)00071-6  0.736
2002 Kroll TT, Zhao WM, Jiang C, Huber PW. A homolog of FBP2/KSRP binds to localized mRNAs in Xenopus oocytes. Development (Cambridge, England). 129: 5609-19. PMID 12421702 DOI: 10.1242/Dev.00160  0.739
2002 Westmark CJ, Ghose R, Huber PW. Phosphorylation of Xenopus transcription factor IIIA by an oocyte protein kinase CK2. The Biochemical Journal. 362: 375-82. PMID 11853545 DOI: 10.1042/Bj3620375  0.316
2001 DiNitto JP, Huber PW. A role for aromatic amino acids in the binding of Xenopus ribosomal protein L5 to 5S rRNA. Biochemistry. 40: 12645-53. PMID 11601989 DOI: 10.1021/Bi011439M  0.767
2001 Huber PW, Rife JP, Moore PB. The structure of helix III in Xenopus oocyte 5 S rRNA: an RNA stem containing a two-nucleotide bulge. Journal of Molecular Biology. 312: 823-32. PMID 11575935 DOI: 10.1006/Jmbi.2001.4966  0.371
2001 Zhao WM, Jiang C, Kroll TT, Huber PW. A proline-rich protein binds to the localization element of Xenopus Vg1 mRNA and to ligands involved in actin polymerization. The Embo Journal. 20: 2315-25. PMID 11331596 DOI: 10.1093/Emboj/20.9.2315  0.743
1998 Westmark CJ, Ghose R, Huber PW. Inhibition of RNA polymerase III transcription by a ribosome-associated kinase activity. Nucleic Acids Research. 26: 4758-64. PMID 9753746 DOI: 10.1093/Nar/26.20.4758  0.436
1998 Wang S, Huber PW, Cui M, Czarnik AW, Mei HY. Binding of neomycin to the TAR element of HIV-1 RNA induces dissociation of Tat protein by an allosteric mechanism. Biochemistry. 37: 5549-57. PMID 9548939 DOI: 10.1021/Bi972808A  0.381
1996 Rawlings SL, Matt GD, Huber PW. Analysis of the binding of Xenopus transcription factor IIIA to oocyte 5 S rRNA and to the 5 S rRNA gene. The Journal of Biological Chemistry. 271: 868-77. PMID 8557698 DOI: 10.1074/Jbc.271.2.869  0.412
1995 Scripture JB, Huber PW. Analysis of the binding of Xenopus ribosomal protein L5 to oocyte 5 S rRNA. The major determinants of recognition are located in helix III-loop C. The Journal of Biological Chemistry. 270: 27358-65. PMID 7592999 DOI: 10.1074/jbc.270.45.27358  0.349
1992 Chow CS, Hartmann KM, Rawlings SL, Huber PW, Barton JK. Delineation of structural domains in eukaryotic 5S rRNA with a rhodium probe. Biochemistry. 31: 3534-42. PMID 1554733 DOI: 10.1021/Bi00128A030  0.382
1991 Huber PW, Morii T, Mei HY, Barton JK. Structural polymorphism in the major groove of a 5S RNA gene complements the zinc finger domains of transcription factor IIIA. Proceedings of the National Academy of Sciences of the United States of America. 88: 10801-5. PMID 1961749 DOI: 10.1073/Pnas.88.23.10801  0.376
1991 Darsillo P, Huber PW. The use of chemical nucleases to analyze RNA-protein interactions. The TFIIIA-5 S rRNA complex. The Journal of Biological Chemistry. 266: 21075-82. PMID 1939152  0.322
1988 Huber PW, Wool IG. Use of alpha-sarcin to analyze ribosomal RNA-protein interactions. Methods in Enzymology. 164: 468-75. PMID 3071677 DOI: 10.1016/S0076-6879(88)64062-6  0.621
1986 Huber PW, Wool IG. Use of the cytotoxic nuclease alpha-sarcin to identify the binding site on eukaryotic 5 S ribosomal ribonucleic acid for the ribosomal protein L5. The Journal of Biological Chemistry. 261: 3002-5. PMID 3949757  0.557
1986 Huber PW, Wool IG. Identification of the binding site on 5S rRNA for the transcription factor IIIA: proposed structure of a common binding site on 5S rRNA and on the gene. Proceedings of the National Academy of Sciences of the United States of America. 83: 1593-7. PMID 3456603 DOI: 10.1073/Pnas.83.6.1593  0.615
1985 Huber PW, Brandt KG. Kinetic studies of the reduction of yeast glutathione reductase by reduced nicotinamide hypoxanthine dinucleotide phosphate. Archives of Biochemistry and Biophysics. 238: 213-8. PMID 3885856 DOI: 10.1016/0003-9861(85)90158-4  0.659
1984 Huber PW, Wool IG. Nuclease protection analysis of ribonucleoprotein complexes: use of the cytotoxic ribonuclease alpha-sarcin to determine the binding sites for Escherichia coli ribosomal proteins L5, L18, and L25 on 5S rRNA. Proceedings of the National Academy of Sciences of the United States of America. 81: 322-6. PMID 6364140 DOI: 10.1073/Pnas.81.2.322  0.605
1983 Endo Y, Huber PW, Wool IG. The ribonuclease activity of the cytotoxin alpha-sarcin. The characteristics of the enzymatic activity of alpha-sarcin with ribosomes and ribonucleic acids as substrates. The Journal of Biological Chemistry. 258: 2662-7. PMID 6185500  0.459
1982 Ulbrich N, Chan YL, Huber PW, Wool IG. Separate binding sites on rat liver ribosomal protein L6 for 5 S and 5.8 S ribosomal ribonucleic acids and for transfer ribonucleic acids. The Journal of Biological Chemistry. 257: 11353-7. PMID 7118887  0.541
1980 Huber PW, Brandt KG. Kinetic studies of the mechanism of pyridine nucleotide dependent reduction of yeast glutathione reductase. Biochemistry. 19: 4569-75. PMID 7000180 DOI: 10.1021/Bi00561A005  0.673
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