| Year |
Citation |
Score |
| 2024 |
Prabhu H, Bhosale H, Sane A, Dhadwal R, Ramakrishnan V, Valadi J. Protein feature engineering framework for AMPylation site prediction. Scientific Reports. 14: 8695. PMID 38622194 DOI: 10.1038/s41598-024-58450-8 |
0.259 |
|
| 2024 |
Preethy H A, Venkatakrishnan YB, Ramakrishnan V, Krishnan UM. A network pharmacological approach for the identification of potential therapeutic targets of - a complex traditional Siddha formulation. Journal of Biomolecular Structure & Dynamics. 1-24. PMID 38459935 DOI: 10.1080/07391102.2024.2322612 |
0.254 |
|
| 2023 |
Diaz A, Ramakrishnan V. Effect of osmolytes on the EcoRI endonuclease: Insights into hydration and protein dynamics from molecular dynamics simulations. Computational Biology and Chemistry. 105: 107883. PMID 37210944 DOI: 10.1016/j.compbiolchem.2023.107883 |
0.372 |
|
| 2022 |
Diaz A, G S, Balaji S, Ramakrishnan J, Thamotharan S, Ramakrishnan V. Comprehensive screening of marine metabolites against class B1 metallo-β-lactamases of using two-pronged approach. Journal of Biomolecular Structure & Dynamics. 1-14. PMID 36541935 DOI: 10.1080/07391102.2022.2159532 |
0.265 |
|
| 2022 |
Diaz A, Jothiraman HB, Ramakrishnan V. Effect of glycerol on free DNA: A molecular dynamics simulation study. Journal of Molecular Graphics & Modelling. 114: 108169. PMID 35378434 DOI: 10.1016/j.jmgm.2022.108169 |
0.368 |
|
| 2022 |
Lahorkar A, Bhosale H, Sane A, Ramakrishnan V, Valadi JK. Identification of Phase Separating Proteins with Distributed Reduced Alphabet Representations of Sequences. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 35139023 DOI: 10.1109/TCBB.2022.3149310 |
0.292 |
|
| 2021 |
Preethy HA, Rajendran K, Mishra A, Karthikeyan A, Chellappan DR, Ramakrishnan V, Krishnan UM. Towards understanding the mechanism of action of a polyherbal formulation using a multi-pronged strategy. Computers in Biology and Medicine. 104999. PMID 34862035 DOI: 10.1016/j.compbiomed.2021.104999 |
0.277 |
|
| 2021 |
Bhosale H, Ramakrishnan V, Jayaraman VK. Support vector machine-based prediction of pore-forming toxins (PFT) using distributed representation of reduced alphabets. Journal of Bioinformatics and Computational Biology. 19: 2150028. PMID 34693886 DOI: 10.1142/S0219720021500281 |
0.292 |
|
| 2021 |
Cheepurupalli L, Diaz A, Gopal AC, Rathore SS, Ramakrishnan V, Ramakrishnan J. and screening of new Delhi metallo-β-lactamase-1 inhibitors from endophytic spp. Journal of Biomolecular Structure & Dynamics. 1-13. PMID 34657563 DOI: 10.1080/07391102.2021.1990132 |
0.231 |
|
| 2020 |
Rajendran K, Chellappan DR, Sankaranarayanan S, Ramakrishnan V, Krishnan UM. Investigations on a polyherbal formulation for treatment of cognitive impairment in a cholinergic dysfunctional rodent model. Neurochemistry International. 141: 104890. PMID 33122033 DOI: 10.1016/j.neuint.2020.104890 |
0.283 |
|
| 2017 |
Ramachandrakurup S, Ramakrishnan V. Effect of NaeI-L43K mutation on protein dynamics and DNA conformation: Insights from molecular dynamics simulations. Journal of Molecular Graphics & Modelling. 76: 456-465. PMID 28787652 DOI: 10.1016/J.Jmgm.2017.07.029 |
0.452 |
|
| 2016 |
Ramachandrakurup S, Ammapalli S, Ramakrishnan V. Investigating the effect of charged amino acids on DNA conformation in EcoRI-DNA complex: a molecular dynamics simulation study. Journal of Biomolecular Structure & Dynamics. 1-15. PMID 27935429 DOI: 10.1080/07391102.2016.1261741 |
0.415 |
|
| 2016 |
Ramya L, Ramakrishnan V. Interaction of Tenebrio Molitor Antifreeze Protein with Ice Crystal: Insights from Molecular Dynamics Simulations. Molecular Informatics. 35: 268-77. PMID 27492241 DOI: 10.1002/Minf.201600034 |
0.365 |
|
| 2016 |
Ranganarayanan P, Thanigesan N, Ananth V, Jayaraman VK, Ramakrishnan V. Identification of Glucose-Binding Pockets in Human Serum Albumin Using Support Vector Machine and Molecular Dynamics Simulations. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 13: 148-57. PMID 26886739 DOI: 10.1109/Tcbb.2015.2415806 |
0.376 |
|
| 2014 |
Selvaraj S, Ramanathan R, Vasudevaraja V, Rajan KS, Krishnaswamy S, Pemiah B, Sethuraman S, Ramakrishnan V, Krishnan UM. Transcriptional regulation of the pregnane-X receptor by the Ayurvedic formulation Chandraprabha Vati Rsc Advances. 4: 64967-64976. DOI: 10.1039/C4Ra13553A |
0.331 |
|
| 2012 |
Ramakrishnan V, Rajagopalan R. Dynamics and thermodynamics of water around EcoRI bound to a minimally mutated DNA chain. Physical Chemistry Chemical Physics : Pccp. 14: 12277-84. PMID 22872098 DOI: 10.1039/C2Cp41638G |
0.419 |
|
| 2012 |
Ramakrishnan V, Jagannathan S, Shaikh AR, Rajagopalan R. Dynamic and structural changes in the minimally restructuring EcoRI Bound to a minimally mutated DNA chain. Journal of Biomolecular Structure & Dynamics. 29: 743-56. PMID 22208276 DOI: 10.1080/073911012010525020 |
0.437 |
|
| 2011 |
Shah D, Tan AL, Ramakrishnan V, Jiang J, Rajagopalan R. Effects of polydisperse crowders on aggregation reactions: a molecular thermodynamic analysis. The Journal of Chemical Physics. 134: 064704. PMID 21322718 DOI: 10.1063/1.3549906 |
0.501 |
|
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