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Jaanus Remme - Publications

Affiliations: 
University of Tartu, Estonia 
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Year Citation  Score
2023 Reier K, Liiv A, Remme J. Ribosome Protein Composition Mediates Translation during the Stationary Phase. International Journal of Molecular Sciences. 24. PMID 36834540 DOI: 10.3390/ijms24043128  0.308
2022 Liljeruhm J, Leppik M, Bao L, Truu T, Calvo-Noriega M, Freyer NS, Liiv A, Wang J, Blanco RC, Ero R, Remme J, Forster AC. Plasticity and conditional essentiality of modification enzymes for domain V of Escherichia coli 23S ribosomal RNA. Rna (New York, N.Y.). PMID 35260421 DOI: 10.1261/rna.079096.121  0.339
2021 Kisly I, Kattel C, Remme J, Tamm T. Luciferase-based reporter system for in vitro evaluation of elongation rate and processivity of ribosomes. Nucleic Acids Research. PMID 33684199 DOI: 10.1093/nar/gkab121  0.329
2020 Lilleorg S, Reier K, Volõnkin P, Remme J, Liiv A. Phenotypic effects of paralogous ribosomal proteins bL31A and bL31B in E. coli. Scientific Reports. 10: 11682. PMID 32669635 DOI: 10.1038/S41598-020-68582-2  0.478
2020 Huang S, Aleksashin NA, Loveland AB, Klepacki D, Reier K, Kefi A, Szal T, Remme J, Jaeger L, Vázquez-Laslop N, Korostelev AA, Mankin AS. Ribosome engineering reveals the importance of 5S rRNA autonomy for ribosome assembly. Nature Communications. 11: 2900. PMID 32518240 DOI: 10.1038/S41467-020-16694-8  0.43
2019 Tamm T, Kisly I, Remme J. Functional Interactions of Ribosomal Intersubunit Bridges in . Genetics. PMID 31649153 DOI: 10.1534/Genetics.119.302777  0.464
2019 Aleksashin NA, Leppik M, Hockenberry AJ, Klepacki D, Vázquez-Laslop N, Jewett MC, Remme J, Mankin AS. Assembly and functionality of the ribosome with tethered subunits. Nature Communications. 10: 930. PMID 30804338 DOI: 10.1038/S41467-019-08892-W  0.387
2019 Ainelo A, Porosk R, Kilk K, Rosendahl S, Remme J, Hõrak R. Responds to the Toxin GraT by Inducing Ribosome Biogenesis Factors and Repressing TCA Cycle Enzymes. Toxins. 11. PMID 30744127 DOI: 10.3390/Toxins11020103  0.42
2019 Tamm T, Kisly I, Remme J. Supplemental Material for Tamm, Kisly, and Remme, 2019 Genetics. DOI: 10.25386/Genetics.9995402.V1  0.357
2018 Kisly I, Remme J, Tamm T. Ribosomal protein eL24, involved in two intersubunit bridges, stimulates translation initiation and elongation. Nucleic Acids Research. PMID 30407570 DOI: 10.1093/Nar/Gky1083  0.5
2018 Lilleorg S, Reier K, Pulk A, Liiv A, Tammsalu T, Peil L, Cate JD, Remme J. Bacterial ribosome heterogeneity: Changes in ribosomal protein composition during transition into stationary growth phase. Biochimie. 156: 169-180. PMID 30359641 DOI: 10.2210/Pdb6I7V/Pdb  0.472
2017 O'Connor M, Leppik M, Remme J. Pseudouridine-Free Escherichia coli Ribosomes. Journal of Bacteriology. PMID 29180357 DOI: 10.1128/Jb.00540-17  0.492
2017 Leppik M, Liiv A, Remme J. Random pseuoduridylation in vivo reveals critical region of Escherichia coli 23S rRNA for ribosome assembly. Nucleic Acids Research. 45: 6098-6108. PMID 28334881 DOI: 10.1093/Nar/Gkx160  0.539
2017 Lilleorg S, Reier K, Remme J, Liiv A. The Intersubunit Bridge B1b of the Bacterial Ribosome Facilitates Initiation of Protein Synthesis and Maintenance of Translational Fidelity. Journal of Molecular Biology. 429: 1067-1080. PMID 28238762 DOI: 10.1016/J.Jmb.2017.02.015  0.531
2017 Mets T, Lippus M, Schryer D, Liiv A, Kasari V, Paier A, Maiväli Ü, Remme J, Tenson T, Kaldalu N. Toxins MazF and MqsR cleave Escherichia coli rRNA precursors at multiple sites. Rna Biology. 14: 124-135. PMID 27858580 DOI: 10.1080/15476286.2016.1259784  0.501
2016 Kisly I, Gulay SP, Mäeorg U, Dinman JD, Remme J, Tamm T. The functional role of eL19 and eB12 intersubunit bridge in the eukaryotic ribosome. Journal of Molecular Biology. PMID 27038511 DOI: 10.1016/J.Jmb.2016.03.023  0.636
2016 Ainelo A, Tamman H, Leppik M, Remme J, Hõrak R. The toxin GraT inhibits ribosome biogenesis. Molecular Microbiology. 100: 719-34. PMID 26833678 DOI: 10.1111/Mmi.13344  0.454
2014 Starosta AL, Lassak J, Peil L, Atkinson GC, Woolstenhulme CJ, Virumäe K, Buskirk A, Tenson T, Remme J, Jung K, Wilson DN. A conserved proline triplet in Val-tRNA synthetase and the origin of elongation factor P. Cell Reports. 9: 476-83. PMID 25310979 DOI: 10.1016/J.Celrep.2014.09.008  0.387
2014 Starosta AL, Lassak J, Peil L, Atkinson GC, Virumäe K, Tenson T, Remme J, Jung K, Wilson DN. Translational stalling at polyproline stretches is modulated by the sequence context upstream of the stall site. Nucleic Acids Research. 42: 10711-9. PMID 25143529 DOI: 10.1093/Nar/Gku768  0.402
2014 Piir K, Tamm T, Kisly I, Tammsalu T, Remme J. Stepwise splitting of ribosomal proteins from yeast ribosomes by LiCl. Plos One. 9: e101561. PMID 24991888 DOI: 10.1371/Journal.Pone.0101561  0.437
2013 Peil L, Starosta AL, Lassak J, Atkinson GC, Virumäe K, Spitzer M, Tenson T, Jung K, Remme J, Wilson DN. Distinct XPPX sequence motifs induce ribosome stalling, which is rescued by the translation elongation factor EF-P. Proceedings of the National Academy of Sciences of the United States of America. 110: 15265-70. PMID 24003132 DOI: 10.1073/Pnas.1310642110  0.4
2013 Samhita L, Virumäe K, Remme J, Varshney U. Initiation with Elongator tRNAs Journal of Bacteriology. 195: 4202-4209. PMID 23852868 DOI: 10.1128/Jb.00637-13  0.453
2012 Peil L, Starosta AL, Virumäe K, Atkinson GC, Tenson T, Remme J, Wilson DN. Lys34 of translation elongation factor EF-P is hydroxylated by YfcM. Nature Chemical Biology. 8: 695-7. PMID 22706199 DOI: 10.1038/Nchembio.1001  0.347
2012 Leppik M, Ero R, Liiv A, Kipper K, Remme J. Different sensitivity of H69 modification enzymes RluD and RlmH to mutations in Escherichia coli 23S rRNA. Biochimie. 94: 1080-9. PMID 22586702 DOI: 10.1016/J.Biochi.2012.02.023  0.408
2011 Remme J. How to avoid undesirable interactions during ribosome assembly? Molecular Microbiology. 82: 269-71. PMID 21923767 DOI: 10.1111/J.1365-2958.2011.07838.X  0.484
2011 Siibak T, Peil L, Dönhöfer A, Tats A, Remm M, Wilson DN, Tenson T, Remme J. Antibiotic-induced ribosomal assembly defects result from changes in the synthesis of ribosomal proteins. Molecular Microbiology. 80: 54-67. PMID 21320180 DOI: 10.1111/J.1365-2958.2011.07555.X  0.469
2011 Kipper K, Sild S, Hetényi C, Remme J, Liiv A. Pseudouridylation of 23S rRNA helix 69 promotes peptide release by release factor RF2 but not by release factor RF1. Biochimie. 93: 834-44. PMID 21281690 DOI: 10.1016/J.Biochi.2010.12.018  0.349
2010 Ero R, Leppik M, Liiv A, Remme J. Specificity and kinetics of 23S rRNA modification enzymes RlmH and RluD. Rna (New York, N.Y.). 16: 2075-84. PMID 20817755 DOI: 10.1261/Rna.2234310  0.366
2010 Siibak T, Remme J. Subribosomal particle analysis reveals the stages of bacterial ribosome assembly at which rRNA nucleotides are modified. Rna (New York, N.Y.). 16: 2023-32. PMID 20719918 DOI: 10.1261/Rna.2160010  0.508
2010 Pulk A, Liiv A, Peil L, Maiväli U, Nierhaus K, Remme J. Ribosome reactivation by replacement of damaged proteins. Molecular Microbiology. 75: 801-14. PMID 19968789 DOI: 10.1111/J.1365-2958.2009.07002.X  0.473
2009 Siibak T, Peil L, Xiong L, Mankin A, Remme J, Tenson T. Erythromycin- and chloramphenicol-induced ribosomal assembly defects are secondary effects of protein synthesis inhibition. Antimicrobial Agents and Chemotherapy. 53: 563-71. PMID 19029332 DOI: 10.1128/Aac.00870-08  0.47
2009 Kipper K, Hetényi C, Sild S, Remme J, Liiv A. Ribosomal intersubunit bridge B2a is involved in factor-dependent translation initiation and translational processivity. Journal of Molecular Biology. 385: 405-22. PMID 19007789 DOI: 10.1016/J.Jmb.2008.10.065  0.498
2008 Ero R, Peil L, Liiv A, Remme J. Identification of pseudouridine methyltransferase in Escherichia coli. Rna (New York, N.Y.). 14: 2223-33. PMID 18755836 DOI: 10.1261/Rna.1186608  0.441
2008 Peil L, Virumäe K, Remme J. Ribosome assembly in Escherichia coli strains lacking the RNA helicase DeaD/CsdA or DbpA. The Febs Journal. 275: 3772-82. PMID 18565105 DOI: 10.1111/J.1742-4658.2008.06523.X  0.486
2007 Leppik M, Peil L, Kipper K, Liiv A, Remme J. Substrate specificity of the pseudouridine synthase RluD in Escherichia coli. The Febs Journal. 274: 5759-66. PMID 17937767 DOI: 10.1111/J.1742-4658.2007.06101.X  0.49
2006 Iskakova MB, Szaflarski W, Dreyfus M, Remme J, Nierhaus KH. Troubleshooting coupled in vitro transcription-translation system derived from Escherichia coli cells: synthesis of high-yield fully active proteins. Nucleic Acids Research. 34: e135. PMID 17038334 DOI: 10.1093/Nar/Gkl462  0.393
2006 Pulk A, Maiväli U, Remme J. Identification of nucleotides in E. coli 16S rRNA essential for ribosome subunit association. Rna (New York, N.Y.). 12: 790-6. PMID 16556933 DOI: 10.1261/Rna.2275906  0.398
2005 Liiv A, Karitkina D, Maiväli U, Remme J. Analysis of the function of E. coli 23S rRNA helix-loop 69 by mutagenesis. Bmc Molecular Biology. 6: 18. PMID 16053518 DOI: 10.1186/1471-2199-6-18  0.496
2005 Xu J, Golshani A, Aoki H, Remme J, Chosay J, Shinabarger DL, Ganoza MC. Protected nucleotide G2608 in 23S rRNA confers resistance to oxazolidinones in E. coli. Biochemical and Biophysical Research Communications. 328: 471-6. PMID 15694371 DOI: 10.1016/J.Bbrc.2004.12.189  0.381
2004 Ougland R, Zhang CM, Liiv A, Johansen RF, Seeberg E, Hou YM, Remme J, Falnes PØ. AlkB restores the biological function of mRNA and tRNA inactivated by chemical methylation. Molecular Cell. 16: 107-16. PMID 15469826 DOI: 10.1016/J.Molcel.2004.09.002  0.395
2004 Liiv A, Remme J. Importance of transient structures during post-transcriptional refolding of the pre-23S rRNA and ribosomal large subunit assembly. Journal of Molecular Biology. 342: 725-41. PMID 15342233 DOI: 10.1016/J.Jmb.2004.07.082  0.467
2004 Maiväli U, Remme J. Definition of bases in 23S rRNA essential for ribosomal subunit association. Rna (New York, N.Y.). 10: 600-4. PMID 15037769 DOI: 10.1261/Rna.5220504  0.427
2003 Allas U, Liiv A, Remme J. Functional interaction between RNase III and the Escherichia coli ribosome. Bmc Molecular Biology. 4: 8. PMID 12814522 DOI: 10.1186/1471-2199-4-8  0.418
2002 Maiväli U, Pulk A, Loogväli EL, Remme J. Accessibility of phosphates in domain I of 23 S rRNA in the ribosomal 50 S subunit as detected by R(P) phosphorothioates. Biochimica Et Biophysica Acta. 1579: 1-7. PMID 12401213 DOI: 10.1016/S0167-4781(02)00415-3  0.473
2002 Virumae K, Saarma U, Horowitz J, Remme J. Functional importance of the 3'-terminal adenosine of tRNA in ribosomal translation. The Journal of Biological Chemistry. 277: 24128-34. PMID 11967262 DOI: 10.1074/Jbc.M200393200  0.419
2001 Ofengand J, Malhotra A, Remme J, Gutgsell NS, Del Campo M, Jean-Charles S, Peil L, Kaya Y. Pseudouridines and pseudouridine synthases of the ribosome. Cold Spring Harbor Symposia On Quantitative Biology. 66: 147-59. PMID 12762017 DOI: 10.1101/Sqb.2001.66.147  0.506
1998 Liiv A, Tenson T, Margus T, Remme J. Multiple functions of the transcribed spacers in ribosomal RNA operons. Biological Chemistry. 379: 783-93. PMID 9705142 DOI: 10.1515/Bchm.1998.379.7.783  0.469
1998 Liiv A, Remme J. Base-pairing of 23 S rRNA ends is essential for ribosomal large subunit assembly. Journal of Molecular Biology. 276: 537-45. PMID 9551095 DOI: 10.1006/Jmbi.1997.1532  0.441
1997 Saarma U, Remme J, Ehrenberg M, Bilgin N. An A to U transversion at position 1067 of 23 S rRNA from Escherichia coli impairs EF-Tu and EF-G function. Journal of Molecular Biology. 272: 327-35. PMID 9325093 DOI: 10.1006/Jmbi.1997.1254  0.397
1996 Spahn CM, Remme J, Schäfer MA, Nierhaus KH. Mutational analysis of two highly conserved UGG sequences of 23 S rRNA from Escherichia coli. The Journal of Biological Chemistry. 271: 32849-56. PMID 8955123 DOI: 10.1074/Jbc.271.51.32849  0.45
1996 Liiv A, Tenson T, Remme J. Analysis of the ribosome large subunit assembly and 23 S rRNA stability in vivo. Journal of Molecular Biology. 263: 396-410. PMID 8918596 DOI: 10.1006/Jmbi.1996.0584  0.497
1992 Saarma U, Remme J. Novel mutants of 23S RNA: characterization of functional properties. Nucleic Acids Research. 20: 3147-52. PMID 1377819 DOI: 10.1093/Nar/20.12.3147  0.386
1989 Remme J, Margus T, Villems R, Nierhaus KH. The third ribosomal tRNA-binding site, the E site, is occupied in native polysomes. Febs Journal. 183: 281-284. PMID 2667995 DOI: 10.1111/J.1432-1033.1989.Tb14925.X  0.371
Low-probability matches (unlikely to be authored by this person)
1985 Rèmme J, Villems R. On the physico-chemical rationale of the genetic code Febs Letters. 189: 159-162. DOI: 10.1016/0014-5793(85)81015-2  0.296
2022 Jürgenstein K, Tagel M, Ilves H, Leppik M, Kivisaar M, Remme J. Variance in translational fidelity of different bacterial species is affected by pseudouridines in the tRNA anticodon stem-loop. Rna Biology. 19: 1050-1058. PMID 36093925 DOI: 10.1080/15476286.2022.2121447  0.275
2022 Reier K, Lahtvee PJ, Liiv A, Remme J. A Conundrum of r-Protein Stability: Unbalanced Stoichiometry of r-Proteins during Stationary Phase in Escherichia coli. Mbio. e0187322. PMID 35980033 DOI: 10.1128/mbio.01873-22  0.273
2020 Datta M, Pillai M, Modak MJ, Liiv A, Khaja FT, Hussain T, Remme J, Varshney U. A mutation in the ribosomal protein uS12 reveals novel functions of its universally conserved PNSA loop. Molecular Microbiology. PMID 33368752 DOI: 10.1111/mmi.14675  0.245
2020 Tagel M, Ilves H, Leppik M, Jürgenstein K, Remme J, Kivisaar M. Pseudouridines of tRNA Anticodon Stem-Loop Have Unexpected Role in Mutagenesis in sp. Microorganisms. 9. PMID 33374637 DOI: 10.3390/microorganisms9010025  0.18
2024 Ero R, Leppik M, Reier K, Liiv A, Remme J. Ribosomal RNA modification enzymes stimulate large ribosome subunit assembly in E. coli. Nucleic Acids Research. PMID 38554109 DOI: 10.1093/nar/gkae222  0.12
2001 Maiväli Ü, Saarma U, Remme J. Molecular Biology. 35: 569-574. DOI: 10.1023/A:1010575010601  0.12
1989 de Wit RFE, Remme JJ. A report on the efficacy of regional intravenous sympathetic blocks (RIS-blocks) with guanethidine (Ismelin) in long-standing and complicated leg ulcers Archives of Dermatological Research. 281: 206-208. PMID 2774650 DOI: 10.1007/BF00456395  0.054
1980 Remme J, Habbema J, Hermans J. A simulative comparison of linear, quadratic and kernel discrimination Journal of Statistical Computation and Simulation. 11: 87-106. DOI: 10.1080/00949658008810396  0.01
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