| Year |
Citation |
Score |
| 2018 |
Grimes M, Hall B, Foltz L, Levy T, Rikova K, Gaiser J, Cook W, Smirnova E, Wheeler T, Clark NR, Lachmann A, Zhang B, Hornbeck P, Ma'ayan A, Comb M. Integration of protein phosphorylation, acetylation, and methylation data sets to outline lung cancer signaling networks. Science Signaling. 11. PMID 29789295 DOI: 10.1126/Scisignal.Aaq1087 |
0.531 |
|
| 2018 |
Hodos R, Zhang P, Lee HC, Duan Q, Wang Z, Clark NR, Ma'ayan A, Wang F, Kidd B, Hu J, Sontag D, Dudley J. Cell-specific prediction and application of drug-induced gene expression profiles. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 23: 32-43. PMID 29218867 |
0.763 |
|
| 2016 |
Duan Q, Reid SP, Clark NR, Wang Z, Fernandez NF, Rouillard AD, Readhead B, Tritsch SR, Hodos R, Hafner M, Niepel M, Sorger PK, Dudley JT, Bavari S, Panchal RG, et al. L1000CDS(2): LINCS L1000 characteristic direction signatures search engine. Npj Systems Biology and Applications. 2. PMID 28413689 DOI: 10.1038/npjsba.2016.15 |
0.759 |
|
| 2016 |
Wang Z, Monteiro CD, Jagodnik KM, Fernandez NF, Gundersen GW, Rouillard AD, Jenkins SL, Feldmann AS, Hu KS, McDermott MG, Duan Q, Clark NR, Jones MR, Kou Y, Goff T, et al. Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd. Nature Communications. 7: 12846. PMID 27667448 DOI: 10.7490/F1000Research.1113422.1 |
0.783 |
|
| 2016 |
Morgan DJ, Poolman TM, Williamson AJ, Wang Z, Clark NR, Ma'ayan A, Whetton AD, Brass A, Matthews LC, Ray DW. Glucocorticoid receptor isoforms direct distinct mitochondrial programs to regulate ATP production. Scientific Reports. 6: 26419. PMID 27226058 DOI: 10.1038/Srep26419 |
0.647 |
|
| 2016 |
Wang Z, Clark NR, Ma'ayan A. Drug-induced adverse events prediction with the LINCS L1000 data. Bioinformatics (Oxford, England). PMID 27153606 DOI: 10.1093/Bioinformatics/Btw168 |
0.688 |
|
| 2015 |
Clark NR, Szymkiewicz M, Wang Z, Monteiro CD, Jones MR, Ma'ayan A. Principal Angle Enrichment Analysis (PAEA): Dimensionally Reduced Multivariate Gene Set Enrichment Analysis Tool. Proceedings. Ieee International Conference On Bioinformatics and Biomedicine. 2015: 256-262. PMID 26848405 DOI: 10.1109/BIBM.2015.7359689 |
0.716 |
|
| 2015 |
Wang Z, Clark NR, Ma'ayan A. Dynamics of the discovery process of protein-protein interactions from low content studies. Bmc Systems Biology. 9: 26. PMID 26048415 DOI: 10.1186/S12918-015-0173-Z |
0.679 |
|
| 2014 |
Ma'ayan A, Rouillard AD, Clark NR, Wang Z, Duan Q, Kou Y. Lean Big Data integration in systems biology and systems pharmacology. Trends in Pharmacological Sciences. 35: 450-60. PMID 25109570 DOI: 10.1016/J.Tips.2014.07.001 |
0.772 |
|
| 2014 |
Hays T, Ma'ayan A, Clark NR, Tan CM, Teixeira A, Teixeira A, Choi JW, Burdis N, Jung SY, Bajaj AO, O'Malley BW, He JC, Hyink DP, Klotman PE. Proteomics analysis of the non-muscle myosin heavy chain IIa-enriched actin-myosin complex reveals multiple functions within the podocyte. Plos One. 9: e100660. PMID 24949636 DOI: 10.1371/Journal.Pone.0100660 |
0.569 |
|
| 2014 |
Clark NR, Hu KS, Feldmann AS, Kou Y, Chen EY, Duan Q, Ma'ayan A. The characteristic direction: A geometrical approach to identify differentially expressed genes Bmc Bioinformatics. 15. PMID 24650281 DOI: 10.1186/1471-2105-15-79 |
0.775 |
|
| 2013 |
Duan Q, Kou Y, Clark NR, Gordonov S, Ma'ayan A. Metasignatures identify two major subtypes of breast cancer. Cpt: Pharmacometrics & Systems Pharmacology. 2: e35. PMID 23836026 DOI: 10.1038/psp.2013.11 |
0.557 |
|
| 2013 |
Pereira CF, Chang B, Qiu J, Niu X, Papatsenko D, Hendry CE, Clark NR, Nomura-Kitabayashi A, Kovacic JC, Ma'ayan A, Schaniel C, Lemischka IR, Moore K. Induction of a hemogenic program in mouse fibroblasts. Cell Stem Cell. 13: 205-18. PMID 23770078 DOI: 10.1016/J.Stem.2013.05.024 |
0.559 |
|
| 2013 |
Tan CM, Chen EY, Dannenfelser R, Clark NR, Ma'ayan A. Network2Canvas: network visualization on a canvas with enrichment analysis. Bioinformatics (Oxford, England). 29: 1872-8. PMID 23749960 DOI: 10.1093/Bioinformatics/Btt319 |
0.6 |
|
| 2013 |
Chen EY, Tan CM, Kou Y, Duan Q, Wang Z, Meirelles GV, Clark NR, Ma'ayan A. Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool. Bmc Bioinformatics. 14: 128. PMID 23586463 DOI: 10.1186/1471-2105-14-128 |
0.78 |
|
| 2013 |
Zhong Y, Chen EY, Liu R, Chuang PY, Mallipattu SK, Tan CM, Clark NR, Deng Y, Klotman PE, Ma'ayan A, He JC. Renoprotective effect of combined inhibition of angiotensin-converting enzyme and histone deacetylase. Journal of the American Society of Nephrology : Jasn. 24: 801-11. PMID 23559582 DOI: 10.1681/Asn.2012060590 |
0.616 |
|
| 2013 |
Kou Y, Chen EY, Clark NR, Duan Q, Tan CM, Ma'ayan A. ChEA2: Gene-set libraries from ChIP-X experiments to decode the transcription regulome Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8127: 416-430. DOI: 10.1007/978-3-642-40511-2_30 |
0.774 |
|
| 2012 |
Clark NR, Dannenfelser R, Tan CM, Komosinski ME, Ma'ayan A. Sets2Networks: network inference from repeated observations of sets. Bmc Systems Biology. 6: 89. PMID 22824380 DOI: 10.1186/1752-0509-6-89 |
0.561 |
|
| 2012 |
Dannenfelser R, Clark NR, Ma'ayan A. Genes2FANs: connecting genes through functional association networks. Bmc Bioinformatics. 13: 156. PMID 22748121 DOI: 10.1186/1471-2105-13-156 |
0.672 |
|
| 2011 |
Mazloom AR, Dannenfelser R, Clark NR, Grigoryan AV, Linder KM, Cardozo TJ, Bond JC, Boran AD, Iyengar R, Malovannaya A, Lanz RB, Ma'ayan A. Recovering protein-protein and domain-domain interactions from aggregation of IP-MS proteomics of coregulator complexes. Plos Computational Biology. 7: e1002319. PMID 22219718 DOI: 10.1371/Journal.Pcbi.1002319 |
0.729 |
|
| 2011 |
Clark NR, Ma'ayan A. Introduction to statistical methods for analyzing large data sets: gene-set enrichment analysis. Science Signaling. 4: tr4. PMID 21917718 DOI: 10.1126/Scisignal.2001966 |
0.653 |
|
| 2011 |
Clark NR, Ma'ayan A. Introduction to statistical methods to analyze large data sets: principal components analysis. Science Signaling. 4: tr3. PMID 21917717 DOI: 10.1126/Scisignal.2001967 |
0.549 |
|
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