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Kenneth Verheggen - Publications

Affiliations: 
Ghent University, Ghent, Vlaanderen, Belgium 
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17 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Volders PJ, Anckaert J, Verheggen K, Nuytens J, Martens L, Mestdagh P, Vandesompele J. LNCipedia 5: towards a reference set of human long non-coding RNAs. Nucleic Acids Research. PMID 30371849 DOI: 10.1093/Nar/Gky1031  0.719
2018 Tardaguila M, de la Fuente L, Marti C, Pereira C, Pardo-Palacios FJ, Del Risco H, Ferrell M, Mellado M, Macchietto M, Verheggen K, Edelmann M, Ezkurdia I, Vazquez J, Tress M, Mortazavi A, et al. Corrigendum: SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification. Genome Research. 28: 1096. PMID 29967126 DOI: 10.1101/Gr.239137.118  0.508
2018 Tardaguila M, de la Fuente L, Marti C, Pereira C, Pardo-Palacios FJ, Del Risco H, Ferrell M, Mellado M, Macchietto M, Verheggen K, Edelmann M, Ezkurdia I, Vazquez J, Tress M, Mortazavi A, et al. SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification. Genome Research. PMID 29440222 DOI: 10.1101/Gr.222976.117  0.558
2017 Verheggen K, Raeder H, Berven FS, Martens L, Barsnes H, Vaudel M. Anatomy and evolution of database search engines-a central component of mass spectrometry based proteomic workflows. Mass Spectrometry Reviews. PMID 28902424 DOI: 10.1002/Mas.21543  0.756
2017 Verheggen K, Volders PJ, Mestdagh P, Menschaert G, Van Damme P, Gevaert K, Martens L, Vandesompele J. Noncoding after All: Biases in Proteomics Data Do Not Explain Observed Absence of lncRNA Translation Products. Journal of Proteome Research. 16: 2508-2515. PMID 28534634 DOI: 10.1021/Acs.Jproteome.7B00085  0.736
2017 Gupta S, Verheggen K, Tavernier J, Martens L. An unbiased protein association study on the public human proteome reveals biological connections between co-occurring protein pairs. Journal of Proteome Research. PMID 28480704 DOI: 10.1021/Acs.Jproteome.6B01066  0.74
2016 Verheggen K, Martens L, Berven FS, Barsnes H, Vaudel M. Database Search Engines: Paradigms, Challenges and Solutions. Advances in Experimental Medicine and Biology. 919: 147-156. PMID 27975215 DOI: 10.1007/978-3-319-41448-5_6  0.756
2016 Argentini A, Goeminne LJ, Verheggen K, Hulstaert N, Staes A, Clement L, Martens L. moFF: a robust and automated approach to extract peptide ion intensities. Nature Methods. 13: 964-966. PMID 27898063 DOI: 10.1038/Nmeth.4075  0.716
2016 Verheggen K, Maddelein D, Hulstaert N, Martens L, Barsnes H, Vaudel M. Pladipus Enables Universal Distributed Computing in Proteomics Bioinformatics. Journal of Proteome Research. 15: 707-12. PMID 26510693 DOI: 10.1021/Acs.Jproteome.5B00850  0.692
2016 Vaudel M, Verheggen K, Csordas A, Raeder H, Berven FS, Martens L, Vizcaíno JA, Barsnes H. Exploring the potential of public proteomics data. Proteomics. 16: 214-25. PMID 26449181 DOI: 10.1002/Pmic.201500295  0.767
2016 Argentini A, Goeminne LJE, Verheggen K, Hulstaert N, Staes A, Clement L, Martens L. Using moFF to Extract Peptide Ion Intensities from LC-MS experiments Protocol Exchange. DOI: 10.1038/Protex.2016.085  0.717
2015 Volders PJ, Verheggen K, Menschaert G, Vandepoele K, Martens L, Vandesompele J, Mestdagh P. An update on LNCipedia: a database for annotated human lncRNA sequences. Nucleic Acids Research. 43: 4363-4. PMID 25829178 DOI: 10.1093/nar/gkv295  0.472
2015 Volders PJ, Verheggen K, Menschaert G, Vandepoele K, Martens L, Vandesompele J, Mestdagh P. An update on LNCipedia: a database for annotated human lncRNA sequences. Nucleic Acids Research. 43: D174-80. PMID 25378313 DOI: 10.1093/Nar/Gku1060  0.723
2015 Verheggen K, Martens L. Ten years of public proteomics data: How things have evolved, and where the next ten years should lead us Eupa Open Proteomics. 8: 28-35. DOI: 10.1016/J.Euprot.2015.07.014  0.53
2014 Kolker E, Özdemir V, Martens L, Hancock W, Anderson G, Anderson N, Aynacioglu S, Baranova A, Campagna SR, Chen R, Choiniere J, Dearth SP, Feng WC, Ferguson L, Fox G, ... ... Verheggen K, et al. Toward more transparent and reproducible omics studies through a common metadata checklist and data publications. Omics : a Journal of Integrative Biology. 18: 10-4. PMID 24456465 DOI: 10.1089/Omi.2013.0149  0.763
2014 Verheggen K, Barsnes H, Martens L. Distributed computing and data storage in proteomics: many hands make light work, and a stronger memory. Proteomics. 14: 367-77. PMID 24285552 DOI: 10.1002/Pmic.201300288  0.7
2013 Kolker E, Özdemir V, Martens L, Hancock W, Anderson G, Anderson N, Aynacioglu S, Baranova A, Campagna SR, Chen R, Choiniere J, Dearth SP, Feng WC, Ferguson L, Fox G, ... ... Verheggen K, et al. Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications. Big Data. 1: 196-201. PMID 27447251 DOI: 10.1089/big.2013.0039  0.764
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