| Year |
Citation |
Score |
| 2022 |
Ando A, Kirkbride RC, Qiao H, Chen ZJ. Endosperm and maternal-specific expression of EIN2 affects endosperm cellularization and seed size in Arabidopsis. Genetics. PMID 36282525 DOI: 10.1093/genetics/iyac161 |
0.381 |
|
| 2022 |
Cao S, Wang L, Han T, Ye W, Liu Y, Sun Y, Moose SP, Song Q, Chen ZJ. Small RNAs mediate transgenerational inheritance of genome-wide trans-acting epialleles in maize. Genome Biology. 23: 53. PMID 35139883 DOI: 10.1186/s13059-022-02614-0 |
0.314 |
|
| 2021 |
Jiang X, Song Q, Ye W, Chen ZJ. Concerted genomic and epigenomic changes accompany stabilization of Arabidopsis allopolyploids. Nature Ecology & Evolution. PMID 34413505 DOI: 10.1038/s41559-021-01523-y |
0.371 |
|
| 2021 |
Wang L, Jia G, Jiang X, Cao S, Chen ZJ, Song Q. Altered chromatin architecture and gene expression during polyploidization and domestication of soybean. The Plant Cell. PMID 33730165 DOI: 10.1093/plcell/koab081 |
0.426 |
|
| 2020 |
Wang F, Han T, Song Q, Ye W, Song X, Chu J, Li J, Chen ZJ. Rice Circadian Clock Regulates Tiller Growth and Panicle Development Through Strigolactone Signaling and Sugar Sensing. The Plant Cell. PMID 32796126 DOI: 10.1105/Tpc.20.00289 |
0.373 |
|
| 2020 |
Luo J, Chai J, Wen Y, Tao M, Lin G, Liu X, Ren L, Chen Z, Wu S, Li S, Wang Y, Qin Q, Wang S, Gao Y, Huang F, ... ... Chen ZJ, et al. From asymmetrical to balanced genomic diversification during rediploidization: Subgenomic evolution in allotetraploid fish. Science Advances. 6: eaaz7677. PMID 32766441 DOI: 10.1126/Sciadv.Aaz7677 |
0.423 |
|
| 2020 |
Song Q, Ando A, Jiang N, Ikeda Y, Chen ZJ. Single-cell RNA-seq analysis reveals ploidy-dependent and cell-specific transcriptome changes in Arabidopsis female gametophytes. Genome Biology. 21: 178. PMID 32698836 DOI: 10.1186/S13059-020-02094-0 |
0.371 |
|
| 2020 |
Chen ZJ, Sreedasyam A, Ando A, Song Q, De Santiago LM, Hulse-Kemp AM, Ding M, Ye W, Kirkbride RC, Jenkins J, Plott C, Lovell J, Lin YM, Vaughn R, Liu B, et al. Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement. Nature Genetics. PMID 32313247 DOI: 10.1038/S41588-020-0614-5 |
0.474 |
|
| 2020 |
Yin D, Ji C, Song Q, Zhang W, Zhang X, Zhao K, Chen CY, Wang C, He G, Liang Z, Ma X, Li Z, Tang Y, Wang Y, Li K, ... ... Chen ZJ, et al. Comparison of with Diploid and Cultivated Tetraploid Genomes Reveals Asymmetric Subgenome Evolution and Improvement of Peanut. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). 7: 1901672. PMID 32099754 DOI: 10.1002/Advs.201901672 |
0.357 |
|
| 2019 |
Song Q, Huang TY, Yu HH, Ando A, Mas P, Ha M, Chen ZJ. Diurnal regulation of SDG2 and JMJ14 by circadian clock oscillators orchestrates histone modification rhythms in Arabidopsis. Genome Biology. 20: 170. PMID 31429787 DOI: 10.1186/S13059-019-1777-1 |
0.364 |
|
| 2019 |
Chen ZJ, Mas P. Interactive roles of chromatin regulation and circadian clock function in plants. Genome Biology. 20: 62. PMID 30902105 DOI: 10.1186/S13059-019-1672-9 |
0.388 |
|
| 2019 |
Kirkbride RC, Lu J, Zhang C, Mosher RA, Baulcombe DC, Chen ZJ. Maternal small RNAs mediate spatial-temporal regulation of gene expression, imprinting, and seed development in . Proceedings of the National Academy of Sciences of the United States of America. PMID 30692258 DOI: 10.1073/Pnas.1807621116 |
0.496 |
|
| 2018 |
Zhao X, Jiang Y, Li J, Huq E, Chen ZJ, Xu D, Deng XW. COP1 SUPPRESSOR 4 promotes seedling photomorphogenesis by repressing and expression in . Proceedings of the National Academy of Sciences of the United States of America. PMID 30352855 DOI: 10.1073/Pnas.1813171115 |
0.376 |
|
| 2018 |
Lin F, Jiang Y, Li J, Yan T, Fan L, Liang JS, Chen ZJ, Xu D, Deng XW. BBX28 negatively regulates photomorphogenesis by repressing HY5 activity and itself undergoes COP1-mediated degradation in Arabidopsis. The Plant Cell. PMID 30099385 DOI: 10.1105/Tpc.18.00226 |
0.41 |
|
| 2018 |
Song Q, Ando A, Xu D, Fang L, Zhang T, Huq E, Qiao H, Deng XW, Chen ZJ. Diurnal down-regulation of ethylene biosynthesis mediates biomass heterosis. Proceedings of the National Academy of Sciences of the United States of America. PMID 29735680 DOI: 10.1073/Pnas.1722068115 |
0.421 |
|
| 2018 |
Ding M, Chen ZJ. Epigenetic perspectives on the evolution and domestication of polyploid plant and crops. Current Opinion in Plant Biology. 42: 37-48. PMID 29502038 DOI: 10.1016/J.Pbi.2018.02.003 |
0.384 |
|
| 2017 |
Wang L, Yuan J, Ma Y, Jiao W, Ye W, Yang DL, Yi C, Chen ZJ. Rice Interploidy Crosses Disrupt Epigenetic Regulation, Gene Expression, and Seed Development. Molecular Plant. PMID 29269023 DOI: 10.1016/J.Molp.2017.12.006 |
0.493 |
|
| 2017 |
Jiao W, Yuan J, Jiang S, Liu Y, Wang L, Liu M, Zheng D, Ye W, Wang X, Chen ZJ. Asymmetrical changes of gene expression, small RNAs and chromatin in two resynthesized wheat allotetraploids. The Plant Journal : For Cell and Molecular Biology. PMID 29265531 DOI: 10.1111/Tpj.13805 |
0.544 |
|
| 2017 |
Tong J, Zhao W, Lv H, Li WP, Chen ZJ, Zhang C. Transcriptomic profiling in human decidua of severe preeclampsia detected by RNA sequencing. Journal of Cellular Biochemistry. PMID 28618048 DOI: 10.1002/jcb.26221 |
0.363 |
|
| 2017 |
Song Q, Zhang T, Stelly DM, Chen ZJ. Epigenomic and functional analyses reveal roles of epialleles in the loss of photoperiod sensitivity during domestication of allotetraploid cottons. Genome Biology. 18: 99. PMID 28558752 DOI: 10.1186/S13059-017-1229-8 |
0.422 |
|
| 2017 |
Ng DW, Chen HH, Chen ZJ. Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids. Scientific Reports. 7: 45087. PMID 28345627 DOI: 10.1038/Srep45087 |
0.367 |
|
| 2017 |
Yuan J, Chen S, Jiao W, Wang L, Wang L, Ye W, Lu J, Hong D, You S, Cheng Z, Yang DL, Chen ZJ. Both maternally and paternally imprinted genes regulate seed development in rice. The New Phytologist. PMID 28295376 DOI: 10.1111/Nph.14510 |
0.546 |
|
| 2017 |
Fang L, Gong H, Hu Y, Liu C, Zhou B, Huang T, Wang Y, Chen S, Fang DD, Du X, Chen H, Chen J, Wang S, Wang Q, Wan Q, ... ... Chen ZJ, et al. Genomic insights into divergence and dual domestication of cultivated allotetraploid cottons. Genome Biology. 18: 33. PMID 28219438 DOI: 10.1186/S13059-017-1167-5 |
0.319 |
|
| 2016 |
Zheng D, Ye W, Song Q, Han F, Zhang T, Chen ZJ. Histone modifications define expression bias of homoeologous genomes in allotetraploid cotton. Plant Physiology. PMID 27637746 DOI: 10.1104/Pp.16.01210 |
0.469 |
|
| 2016 |
Ko DK, Rohozinski D, Song Q, Taylor SH, Juenger TE, Harmon FG, Chen ZJ. Temporal Shift of Circadian-Mediated Gene Expression and Carbon Fixation Contributes to Biomass Heterosis in Maize Hybrids. Plos Genetics. 12: e1006197. PMID 27467757 DOI: 10.1371/Journal.Pgen.1006197 |
0.448 |
|
| 2015 |
Song Q, Guan X, Chen ZJ. Dynamic Roles for Small RNAs and DNA Methylation during Ovule and Fiber Development in Allotetraploid Cotton. Plos Genetics. 11: e1005724. PMID 26710171 DOI: 10.1371/Journal.Pgen.1005724 |
0.407 |
|
| 2015 |
Kirkbride RC, Yu HH, Nah G, Zhang C, Shi X, Chen ZJ. An epigenetic role for disrupted paternal gene expression in postzygotic seed abortion in Arabidopsis interspecific hybrids. Molecular Plant. PMID 26409189 DOI: 10.1016/J.Molp.2015.09.009 |
0.494 |
|
| 2015 |
Miller M, Song Q, Shi X, Juenger TE, Chen ZJ. Natural variation in timing of stress-responsive gene expression predicts heterosis in intraspecific hybrids of Arabidopsis. Nature Communications. 6: 7453. PMID 26154604 DOI: 10.1038/Ncomms8453 |
0.418 |
|
| 2015 |
Gao MJ, Li X, Huang J, Gropp GM, Gjetvaj B, Lindsay DL, Wei S, Coutu C, Chen Z, Wan XC, Hannoufa A, Lydiate DJ, Gruber MY, Chen ZJ, Hegedus DD. SCARECROW-LIKE15 interacts with HISTONE DEACETYLASE19 and is essential for repressing the seed maturation programme. Nature Communications. 6: 7243. PMID 26129778 DOI: 10.1038/Ncomms8243 |
0.45 |
|
| 2015 |
Tuttle JR, Nah G, Duke MV, Alexander DC, Guan X, Song Q, Chen ZJ, Scheffler BE, Haigler CH. Metabolomic and transcriptomic insights into how cotton fiber transitions to secondary wall synthesis, represses lignification, and prolongs elongation. Bmc Genomics. 16: 477. PMID 26116072 DOI: 10.1186/S12864-015-1708-9 |
0.321 |
|
| 2015 |
Shi X, Zhang C, Ko DK, Chen ZJ. Genome-Wide Dosage-Dependent and -Independent Regulation Contributes to Gene Expression and Evolutionary Novelty in Plant Polyploids. Molecular Biology and Evolution. 32: 2351-66. PMID 25976351 DOI: 10.1093/Molbev/Msv116 |
0.526 |
|
| 2015 |
Kim HJ, Hinchliffe DJ, Triplett BA, Chen ZJ, Stelly DM, Yeater KM, Moon HS, Gilbert MK, Thyssen GN, Turley RB, Fang DD. Phytohormonal networks promote differentiation of fiber initials on pre-anthesis cotton ovules grown in vitro and in planta. Plos One. 10: e0125046. PMID 25927364 DOI: 10.1371/Journal.Pone.0125046 |
0.373 |
|
| 2015 |
Zhang T, Hu Y, Jiang W, Fang L, Guan X, Chen J, Zhang J, Saski CA, Scheffler BE, Stelly DM, Hulse-Kemp AM, Wan Q, Liu B, Liu C, Wang S, ... ... Chen ZJ, et al. Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement. Nature Biotechnology. 33: 531-7. PMID 25893781 DOI: 10.1038/Nbt.3207 |
0.392 |
|
| 2015 |
Song Q, Chen ZJ. Epigenetic and developmental regulation in plant polyploids. Current Opinion in Plant Biology. 24: 101-9. PMID 25765928 DOI: 10.1016/J.Pbi.2015.02.007 |
0.492 |
|
| 2015 |
Ashrafi H, Hulse-Kemp AM, Wang F, Yang SS, Guan X, Jones DC, Matvienko M, Mockaitis K, Chen ZJ, Stelly DM, Van Deynze A. A long-read transcriptome assembly of cotton (Gossypium hirsutum l.) and intraspecific single nucleotide polymorphism discovery Plant Genome. 8. DOI: 10.3835/Plantgenome2014.10.0068 |
0.373 |
|
| 2014 |
Shan CM, Shangguan XX, Zhao B, Zhang XF, Chao LM, Yang CQ, Wang LJ, Zhu HY, Zeng YD, Guo WZ, Zhou BL, Hu GJ, Guan XY, Chen ZJ, Wendel JF, et al. Control of cotton fibre elongation by a homeodomain transcription factor GhHOX3. Nature Communications. 5: 5519. PMID 25413731 DOI: 10.1038/Ncomms6519 |
0.429 |
|
| 2014 |
Guan X, Nah G, Song Q, Udall JA, Stelly DM, Chen ZJ. Transcriptome analysis of extant cotton progenitors revealed tetraploidization and identified genome-specific single nucleotide polymorphism in diploid and allotetraploid cotton. Bmc Research Notes. 7: 493. PMID 25099166 DOI: 10.1186/1756-0500-7-493 |
0.354 |
|
| 2014 |
Ng DW, Miller M, Yu HH, Huang TY, Kim ED, Lu J, Xie Q, McClung CR, Chen ZJ. A Role for CHH Methylation in the Parent-of-Origin Effect on Altered Circadian Rhythms and Biomass Heterosis in Arabidopsis Intraspecific Hybrids. The Plant Cell. 26: 2430-2440. PMID 24894042 DOI: 10.1105/Tpc.113.115980 |
0.493 |
|
| 2014 |
Guan X, Song Q, Chen ZJ. Polyploidy and small RNA regulation of cotton fiber development. Trends in Plant Science. 19: 516-28. PMID 24866591 DOI: 10.1016/J.Tplants.2014.04.007 |
0.446 |
|
| 2014 |
Ng DW, Shi X, Nah G, Chen ZJ. High-throughput RNA-seq for allelic or locus-specific expression analysis in Arabidopsis-related species, hybrids, and allotetraploids. Methods in Molecular Biology (Clifton, N.J.). 1112: 33-48. PMID 24478006 DOI: 10.1007/978-1-62703-773-0_3 |
0.512 |
|
| 2014 |
Guan X, Pang M, Nah G, Shi X, Ye W, Stelly DM, Chen ZJ. miR828 and miR858 regulate homoeologous MYB2 gene functions in Arabidopsis trichome and cotton fibre development. Nature Communications. 5: 3050. PMID 24430011 DOI: 10.1038/Ncomms4050 |
0.339 |
|
| 2013 |
Chen ZJ. Genomic and epigenetic insights into the molecular bases of heterosis Nature Reviews Genetics. 14: 471-482. PMID 23752794 DOI: 10.1038/Nrg3503 |
0.462 |
|
| 2012 |
Miller ME, Zhang C, Chen ZJ. Ploidy and hybridity effects on growth vigor and gene expression in arabidopsis thaliana hybrids and their parents G3: Genes, Genomes, Genetics. 2: 505-513. PMID 22540042 DOI: 10.1534/G3.112.002162 |
0.462 |
|
| 2012 |
Lu J, Zhang C, Baulcombe DC, Chen ZJ. Maternal siRNAs as regulators of parental genome imbalance and gene expression in endosperm of Arabidopsis seeds. Proceedings of the National Academy of Sciences of the United States of America. 109: 5529-34. PMID 22431617 DOI: 10.1073/pnas.1203094109 |
0.388 |
|
| 2012 |
Ng DW, Lu J, Chen ZJ. Big roles for small RNAs in polyploidy, hybrid vigor, and hybrid incompatibility. Current Opinion in Plant Biology. 15: 154-61. PMID 22326630 DOI: 10.1016/J.Pbi.2012.01.007 |
0.463 |
|
| 2011 |
Zhang C, Ng DW, Lu J, Chen ZJ. Roles of target site location and sequence complementarity in trans-acting siRNA formation in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. 69: 217-26. PMID 21910773 DOI: 10.1111/J.1365-313X.2011.04783.X |
0.326 |
|
| 2011 |
Kim ED, Chen ZJ. Unstable transcripts in Arabidopsis allotetraploids are associated with nonadditive gene expression in response to abiotic and biotic stresses Plos One. 6. PMID 21897874 DOI: 10.1371/journal.pone.0024251 |
0.424 |
|
| 2011 |
Guan X, Lee JJ, Pang M, Shi X, Stelly DM, Chen ZJ. Activation of Arabidopsis seed hair development by cotton fiber-related genes. Plos One. 6: e21301. PMID 21779324 DOI: 10.1371/Journal.Pone.0021301 |
0.357 |
|
| 2011 |
Mayfield D, Chen ZJ, Pires JC. Epigenetic regulation of flowering time in polyploids. Current Opinion in Plant Biology. 14: 174-8. PMID 21470900 DOI: 10.1016/J.Pbi.2011.03.008 |
0.419 |
|
| 2011 |
Ha M, Ng DW, Li WH, Chen ZJ. Coordinated histone modifications are associated with gene expression variation within and between species. Genome Research. 21: 590-8. PMID 21324879 DOI: 10.1101/Gr.116467.110 |
0.501 |
|
| 2010 |
Wang K, Guo W, Yang Z, Hu Y, Zhang W, Zhou B, Stelly DM, Chen ZJ, Zhang T. Structure and size variations between 12A and 12D homoeologous chromosomes based on high-resolution cytogenetic map in allotetraploid cotton. Chromosoma. 119: 255-66. PMID 20127105 DOI: 10.1007/S00412-009-0254-0 |
0.314 |
|
| 2010 |
Nah G, Chen ZJ. Tandem duplication of the FLC locus and the origin of a new gene in Arabidopsis related species and their functional implications in allopolyploids. New Phytologist. 186: 228-238. PMID 20100201 DOI: 10.1111/J.1469-8137.2009.03164.X |
0.469 |
|
| 2010 |
Hinchliffe DJ, Meredith WR, Yeater KM, Kim HJ, Woodward AW, Chen ZJ, Triplett BA. Near-isogenic cotton germplasm lines that differ in fiber-bundle strength have temporal differences in fiber gene expression patterns as revealed by comparative high-throughput profiling. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 120: 1347-66. PMID 20087569 DOI: 10.1007/S00122-010-1260-6 |
0.38 |
|
| 2010 |
Chen ZJ. Molecular mechanisms of polyploidy and hybrid vigor Trends in Plant Science. 15: 57-71. PMID 20080432 DOI: 10.1016/J.Tplants.2009.12.003 |
0.464 |
|
| 2010 |
Jackson S, Chen ZJ. Genomic and expression plasticity of polyploidy Current Opinion in Plant Biology. 13: 153-159. PMID 20031477 DOI: 10.1016/j.pbi.2009.11.004 |
0.36 |
|
| 2009 |
Ha M, Lu J, Tian L, Ramachandran V, Kasschau KD, Chapman EJ, Carrington JC, Chen X, Wang XJ, Chen ZJ. Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids. Proceedings of the National Academy of Sciences of the United States of America. 106: 17835-40. PMID 19805056 DOI: 10.1073/Pnas.0907003106 |
0.423 |
|
| 2009 |
Gaeta RT, Yoo SY, Pires JC, Doerge RW, Chen ZJ, Osborn TC. Analysis of gene expression in resynthesized Brassica napus Allopolyploids using arabidopsis 70mer oligo microarrays. Plos One. 4: e4760. PMID 19274085 DOI: 10.1371/Journal.Pone.0004760 |
0.375 |
|
| 2009 |
Ha M, Kim ED, Chen ZJ. Duplicate genes increase expression diversity in closely related species and allopolyploids. Proceedings of the National Academy of Sciences of the United States of America. 106: 2295-300. PMID 19168631 DOI: 10.1073/Pnas.0807350106 |
0.508 |
|
| 2009 |
Ni Z, Kim ED, Ha M, Lackey E, Liu J, Zhang Y, Sun Q, Chen ZJ. Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids. Nature. 457: 327-31. PMID 19029881 DOI: 10.1038/Nature07523 |
0.491 |
|
| 2009 |
Kim E, Chen ZJ. Cloning circadian promoters Nature Protocols. DOI: 10.1038/Nprot.2009.14 |
0.319 |
|
| 2009 |
Ni Z, Ng DW-, Liu J, Chen ZJ. Chromatin immunoprecipitation (ChIP) assay Nature Protocols. DOI: 10.1038/Nprot.2009.11 |
0.317 |
|
| 2008 |
Chen M, Ha M, Lackey E, Wang J, Chen ZJ. RNAi of met1 reduces DNA methylation and induces genome-specific changes in gene expression and centromeric small RNA accumulation in Arabidopsis allopolyploids. Genetics. 178: 1845-58. PMID 18430920 DOI: 10.1534/Genetics.107.086272 |
0.498 |
|
| 2008 |
Ha M, Pang M, Agarwal V, Chen ZJ. Interspecies regulation of microRNAs and their targets. Biochimica Et Biophysica Acta. 1779: 735-42. PMID 18407843 DOI: 10.1016/J.Bbagrm.2008.03.004 |
0.313 |
|
| 2007 |
Lee JJ, Woodward AW, Chen ZJ. Gene expression changes and early events in cotton fibre development. Annals of Botany. 100: 1391-401. PMID 17905721 DOI: 10.1093/Aob/Mcm232 |
0.317 |
|
| 2007 |
Zhao J, Wang J, An L, Doerge RW, Chen ZJ, Grau CR, Meng J, Osborn TC. Analysis of gene expression profiles in response to Sclerotinia sclerotiorum in Brassica napus. Planta. 227: 13-24. PMID 17665211 DOI: 10.1007/S00425-007-0586-Z |
0.469 |
|
| 2007 |
Chen ZJ, Tian L. Roles of dynamic and reversible histone acetylation in plant development and polyploidy Biochimica Et Biophysica Acta - Gene Structure and Expression. 1769: 295-307. PMID 17556080 DOI: 10.1016/J.Bbaexp.2007.04.007 |
0.449 |
|
| 2007 |
Chen ZJ, Ha M, Soltis D. Polyploidy: genome obesity and its consequences. The New Phytologist. 174: 717-20. PMID 17504455 DOI: 10.1111/J.1469-8137.2007.02084.X |
0.424 |
|
| 2007 |
Udall JA, Flagel LE, Cheung F, Woodward AW, Hovav R, Rapp RA, Swanson JM, Lee JJ, Gingle AR, Nettleton D, Town CD, Chen ZJ, Wendel JF. Spotted cotton oligonucleotide microarrays for gene expression analysis. Bmc Genomics. 8: 81. PMID 17389046 DOI: 10.1186/1471-2164-8-81 |
0.459 |
|
| 2007 |
Ha M, Li WH, Chen ZJ. External factors accelerate expression divergence between duplicate genes. Trends in Genetics : Tig. 23: 162-6. PMID 17320239 DOI: 10.1016/J.Tig.2007.02.005 |
0.446 |
|
| 2007 |
Chen ZJ. Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids Annual Review of Plant Biology. 58: 377-406. PMID 17280525 DOI: 10.1146/annurev.arplant.58.032806.103835 |
0.364 |
|
| 2006 |
Tate JA, Ni Z, Scheen AC, Koh J, Gilbert CA, Lefkowitz D, Chen ZJ, Soltis PS, Soltis DE. Evolution and expression of homeologous loci in Tragopogon miscellus (Asteraceae), a recent and reciprocally formed allopolyploid. Genetics. 173: 1599-611. PMID 16648586 DOI: 10.1534/Genetics.106.057646 |
0.416 |
|
| 2006 |
Wang N, Lu SE, Wang J, Chen ZJ, Gross DC. The expression of genes encoding lipodepsipeptide phytotoxins by Pseudomonas syringae pv. syringae is coordinated in response to plant signal molecules. Molecular Plant-Microbe Interactions : Mpmi. 19: 257-69. PMID 16570656 DOI: 10.1094/Mpmi-19-0257 |
0.358 |
|
| 2006 |
Wang J, Tian L, Lee HS, Chen ZJ. Nonadditive regulation of FRI and FLC loci mediates flowering-time variation in Arabidopsis allopolyploids. Genetics. 173: 965-74. PMID 16547097 DOI: 10.1534/Genetics.106.056580 |
0.537 |
|
| 2006 |
Chen ZJ, Ni Z. Mechanisms of genomic rearrangements and gene expression changes in plant polyploids Bioessays. 28: 240-252. PMID 16479580 DOI: 10.1002/Bies.20374 |
0.512 |
|
| 2006 |
Lee JJ, Hassan OS, Gao W, Wei NE, Kohel RJ, Chen XY, Payton P, Sze SH, Stelly DM, Chen ZJ. Developmental and gene expression analyses of a cotton naked seed mutant. Planta. 223: 418-32. PMID 16254724 DOI: 10.1007/S00425-005-0098-7 |
0.363 |
|
| 2006 |
Wang J, Tian L, Lee HS, Wei NE, Jiang H, Watson B, Madlung A, Osborn TC, Doerge RW, Comai L, Chen ZJ. Genomewide nonadditive gene regulation in Arabidopsis allotetraploids. Genetics. 172: 507-17. PMID 16172500 DOI: 10.1534/Genetics.105.047894 |
0.519 |
|
| 2005 |
Wang J, Lee JJ, Tian L, Lee HS, Chen M, Rao S, Wei EN, Doerge RW, Comai L, Chen ZJ. Methods for genome-wide analysis of gene expression changes in polyploids. Methods in Enzymology. 395: 570-96. PMID 15865985 DOI: 10.1016/S0076-6879(05)95030-1 |
0.485 |
|
| 2005 |
Pikaard CS, Preuss S, Earley K, Lawrence RJ, Lewis MS, Chen ZJ. Detecting differential expression of parental or progenitor alleles in genetic hybrids and allopolyploids. Methods in Enzymology. 395: 554-69. PMID 15865984 DOI: 10.1016/S0076-6879(05)95029-5 |
0.632 |
|
| 2005 |
Lu SE, Wang N, Wang J, Chen ZJ, Gross DC. Oligonucleotide microarray analysis of the salA regulon controlling phytotoxin production by Pseudomonas syringae pv. syringae. Molecular Plant-Microbe Interactions : Mpmi. 18: 324-33. PMID 15828684 DOI: 10.1094/Mpmi-18-0324 |
0.479 |
|
| 2005 |
Tian L, Fong MP, Wang JJ, Wei NE, Jiang H, Doerge RW, Chen ZJ. Reversible histone acetylation and deacetylation mediate genome-wide, promoter-dependent and locus-specific changes in gene expression during plant development. Genetics. 169: 337-45. PMID 15371352 DOI: 10.1534/Genetics.104.033142 |
0.525 |
|
| 2004 |
Lee HS, Wang J, Tian L, Jiang H, Black MA, Madlung A, Watson B, Lukens L, Pires JC, Wang JJ, Comai L, Osborn TC, Doerge RW, Chen ZJ. Sensitivity of 70-mer oligonucleotides and cDNAs for microarray analysis of gene expression in Arabidopsis and its related species. Plant Biotechnology Journal. 2: 45-57. PMID 17166142 DOI: 10.1046/J.1467-7652.2003.00048.X |
0.486 |
|
| 2004 |
Wang J, Tian L, Madlung A, Lee HS, Chen M, Lee JJ, Watson B, Kagochi T, Comai L, Chen ZJ. Stochastic and epigenetic changes of gene expression in Arabidopsis polyploids. Genetics. 167: 1961-73. PMID 15342533 DOI: 10.1534/Genetics.104.027896 |
0.521 |
|
| 2004 |
Lawrence RJ, Earley K, Pontes O, Silva M, Chen ZJ, Neves N, Viegas W, Pikaard CS. A concerted DNA methylation/histone methylation switch regulates rRNA gene dosage control and nucleolar dominance. Molecular Cell. 13: 599-609. PMID 14992728 DOI: 10.1016/S1097-2765(04)00064-4 |
0.705 |
|
| 2003 |
Pontes O, Lawrence RJ, Neves N, Silva M, Lee JH, Chen ZJ, Viegas W, Pikaard CS. Natural variation in nucleolar dominance reveals the relationship between nucleolus organizer chromatin topology and rRNA gene transcription in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 100: 11418-23. PMID 14504406 DOI: 10.1073/Pnas.1932522100 |
0.755 |
|
| 2003 |
Osborn TC, Pires JC, Birchler JA, Auger DL, Chen ZJ, Lee HS, Comai L, Madlung A, Doerge RW, Colot V, Martienssen RA. Understanding mechanisms of novel gene expression in polyploids. Trends in Genetics : Tig. 19: 141-7. PMID 12615008 DOI: 10.1016/S0168-9525(03)00015-5 |
0.369 |
|
| 1997 |
Chen ZJ, Pikaard CS. Transcriptional analysis of nucleolar dominance in polyploid plants: Biased expression/silencing of progenitor rRNA genes is developmentally regulated in Brassica Proceedings of the National Academy of Sciences of the United States of America. 94: 3442-3447. PMID 9096413 DOI: 10.1073/Pnas.94.7.3442 |
0.708 |
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