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Rebecca B. Dikow, Ph.D. - Publications

Affiliations: 
2012 Evolutionary Biology University of Chicago, Chicago, IL 
Area:
Systematic Biology
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31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Bursell MG, Dikow RB, Figueiró HV, Dudchenko O, Flanagan JP, Aiden EL, Goossens B, Nathan SKSS, Johnson WE, Koepfli KP, Frandsen PB. Whole genome analysis of clouded leopard species reveals an ancient divergence and distinct demographic histories. Iscience. 25: 105647. PMID 36590460 DOI: 10.1016/j.isci.2022.105647  0.324
2022 Chavez DE, Gronau I, Hains T, Dikow RB, Frandsen PB, Figueiró HV, Garcez FS, Tchaicka L, de Paula RC, Rodrigues FHG, Jorge RSP, Lima ES, Songsasen N, Johnson WE, Eizirik E, et al. Comparative genomics uncovers the evolutionary history, demography, and molecular adaptations of South American canids. Proceedings of the National Academy of Sciences of the United States of America. 119: e2205986119. PMID 35969758 DOI: 10.1073/pnas.2205986119  0.34
2020 Roa-Varón A, Dikow RB, Carnevale G, Tornabene L, Baldwin CC, Li C, Hilton EJ. Confronting Sources of Systematic Error to Resolve Historically Contentious Relationships: A Case Study Using Gadiform Fishes (Teleostei, Paracanthopterygii, Gadiformes). Systematic Biology. PMID 33346841 DOI: 10.1093/sysbio/syaa095  0.358
2020 Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, ... ... Dikow RB, et al. Dense sampling of bird diversity increases power of comparative genomics. Nature. 587: 252-257. PMID 33177665 DOI: 10.1038/s41586-020-2873-9  0.31
2020 Legeai F, Santos BF, Robin S, Bretaudeau A, Dikow RB, Lemaitre C, Jouan V, Ravallec M, Drezen JM, Tagu D, Baudat F, Gyapay G, Zhou X, Liu S, Webb BA, et al. Genomic architecture of endogenous ichnoviruses reveals distinct evolutionary pathways leading to virus domestication in parasitic wasps. Bmc Biology. 18: 89. PMID 32703219 DOI: 10.1186/S12915-020-00822-3  0.333
2020 White AE, Dikow RB, Baugh M, Jenkins A, Frandsen PB. Generating segmentation masks of herbarium specimens and a data set for training segmentation models using deep learning. Applications in Plant Sciences. 8: e11352. PMID 32626607 DOI: 10.1002/Aps3.11352  0.428
2020 Tsuchiya MTN, Dikow RB, Cassin-Sackett L. First genome sequence of the Gunnison's prairie dog (Cynomys gunnisoni), a keystone species and player in the transmission of sylvatic plague. Genome Biology and Evolution. PMID 32277812 DOI: 10.1093/Gbe/Evaa069  0.431
2019 Edelman NB, Frandsen PB, Miyagi M, Clavijo B, Davey J, Dikow RB, García-Accinelli G, Van Belleghem SM, Patterson N, Neafsey DE, Challis R, Kumar S, Moreira GRP, Salazar C, Chouteau M, et al. Genomic architecture and introgression shape a butterfly radiation. Science (New York, N.Y.). 366: 594-599. PMID 31672890 DOI: 10.1126/Science.Aaw2090  0.352
2019 Jones KE, Fér T, Schmickl RE, Dikow RB, Funk VA, Herrando-Moraira S, Johnston PR, Kilian N, Siniscalchi CM, Susanna A, Slovák M, Thapa R, Watson LE, Mandel JR. An empirical assessment of a single family-wide hybrid capture locus set at multiple evolutionary timescales in Asteraceae. Applications in Plant Sciences. 7: e11295. PMID 31667023 DOI: 10.1002/Aps3.11295  0.349
2019 Ohdera A, Ames CL, Dikow RB, Kayal E, Chiodin M, Busby B, La S, Pirro S, Collins AG, Medina M, Ryan JF. Box, stalked, and upside-down? Draft genomes from diverse jellyfish (Cnidaria, Acraspeda) lineages: Alatina alata (Cubozoa), Calvadosia cruxmelitensis (Staurozoa), and Cassiopea xamachana (Scyphozoa). Gigascience. 8. PMID 31257419 DOI: 10.1093/Gigascience/Giz069  0.405
2019 Mandel JR, Dikow RB, Siniscalchi CM, Thapa R, Watson LE, Funk VA. A fully resolved backbone phylogeny reveals numerous dispersals and explosive diversifications throughout the history of Asteraceae. Proceedings of the National Academy of Sciences of the United States of America. PMID 31209018 DOI: 10.1073/Pnas.1903871116  0.433
2019 Cortes-Rodriguez N, Campana MG, Berry L, Faegre S, Derrickson SR, Ha RR, Dikow RB, Rutz C, Fleischer RC. Population Genomics and Structure of the Critically Endangered Mariana Crow (). Genes. 10. PMID 30832245 DOI: 10.3390/Genes10030187  0.377
2019 Ren Z, von Dohlen CD, Harris AJ, Dikow RB, Su X, Wen J. Congruent phylogenetic relationships of Melaphidina aphids (Aphididae: Eriosomatinae: Fordini) according to nuclear and mitochondrial DNA data with taxonomic implications on generic limits. Plos One. 14: e0213181. PMID 30818396 DOI: 10.1371/Journal.Pone.0213181  0.417
2019 Earl C, White A, Trizna M, Frandsen P, Kawahara A, Brady S, Dikow R. Discovering Patterns of Biodiversity in Insects Using Deep Machine Learning Biodiversity Information Science and Standards. 3. DOI: 10.3897/BISS.3.37525  0.501
2019 White A, Dikow R, Baugh M, Jenkins A, Frandsen P. Generating Masks for Image Segmentation in Digitized Herbarium Specimens Biodiversity Information Science and Standards. 3. DOI: 10.3897/BISS.3.37479  0.358
2018 Hawkins MTR, Culligan RR, Frasier CL, Dikow RB, Hagenson R, Lei R, Louis EE. Genome sequence and population declines in the critically endangered greater bamboo lemur (Prolemur simus) and implications for conservation. Bmc Genomics. 19: 445. PMID 29884119 DOI: 10.1186/S12864-018-4841-4  0.459
2017 Schuettpelz E, Frandsen PB, Dikow RB, Brown A, Orli S, Peters M, Metallo A, Funk VA, Dorr LJ. Applications of deep convolutional neural networks to digitized natural history collections. Biodiversity Data Journal. e21139. PMID 29200929 DOI: 10.3897/Bdj.5.E21139  0.402
2017 Ren Z, Harris AJ, Dikow RB, Ma E, Zhong Y, Wen J. Another look at the phylogenetic relationships and intercontinental biogeography of eastern Asian - North American Rhus gall aphids (Hemiptera: Aphididae: Eriosomatinae): Evidence from mitogenome sequences via genome skimming. Molecular Phylogenetics and Evolution. PMID 28533083 DOI: 10.1016/J.Ympev.2017.05.017  0.398
2017 Dikow RB, Frandsen PB, Turcatel M, Dikow T. Genomic and transcriptomic resources for assassin flies including the complete genome sequence of Proctacanthus coquilletti (Insecta: Diptera: Asilidae) and 16 representative transcriptomes. Peerj. 5: e2951. PMID 28168115 DOI: 10.7717/Peerj.2951  0.415
2017 Wen J, Harris A, Ickert-Bond SM, Dikow R, Wurdack K, Zimmer EA. Developing integrative systematics in the informatics and genomic era, and calling for a global Biodiversity Cyberbank Journal of Systematics and Evolution. 55: 308-321. DOI: 10.1111/Jse.12270  0.449
2017 Mandel JR, Barker MS, Bayer RJ, Dikow RB, Gao T, Jones KE, Keeley S, Kilian N, Ma H, Siniscalchi CM, Susanna A, Thapa R, Watson L, Funk VA. The Compositae Tree of Life in the age of phylogenomics Journal of Systematics and Evolution. 55: 405-410. DOI: 10.1111/Jse.12265  0.415
2016 Nygaard S, Hu H, Li C, Schiøtt M, Chen Z, Yang Z, Xie Q, Ma C, Deng Y, Dikow RB, Rabeling C, Nash DR, Wcislo WT, Brady SG, Schultz TR, et al. Reciprocal genomic evolution in the ant-fungus agricultural symbiosis. Nature Communications. 7: 12233. PMID 27436133 DOI: 10.1038/Ncomms12233  0.373
2015 Mandel JR, Dikow RB, Funk VA. Using phylogenomics to resolve mega-families: An example from Compositae Journal of Systematics and Evolution. 53: 391-402. DOI: 10.1111/Jse.12167  0.374
2014 Callicrate T, Dikow R, Thomas JW, Mullikin JC, Jarvis ED, Fleischer RC. Genomic resources for the endangered Hawaiian honeycreepers. Bmc Genomics. 15: 1098. PMID 25496081 DOI: 10.1186/1471-2164-15-1098  0.401
2014 Mandel JR, Dikow RB, Funk VA, Masalia RR, Staton SE, Kozik A, Michelmore RW, Rieseberg LH, Burke JM. A target enrichment method for gathering phylogenetic information from hundreds of loci: An example from the Compositae. Applications in Plant Sciences. 2. PMID 25202605 DOI: 10.3732/Apps.1300085  0.409
2013 Dikow RB, Smith WL. Complete genome sequences provide a case study for the evaluation of gene-tree thinking. Cladistics : the International Journal of the Willi Hennig Society. 29: 672-682. PMID 34809407 DOI: 10.1111/cla.12020  0.336
2013 Dikow RB, Smith WL. Genome-level homology and phylogeny of Vibrionaceae (Gammaproteobacteria: Vibrionales) with three new complete genome sequences. Bmc Microbiology. 13: 80. PMID 23578061 DOI: 10.1186/1471-2180-13-80  0.446
2013 Dikow RB, Smith WL. Complete genome sequences provide a case study for the evaluation of gene-tree thinking Cladistics. 29: 672-682. DOI: 10.1111/Cla.12020  0.325
2011 Dikow RB. Systematic relationships within the Vibrionaceae (Bacteria: Gammaproteobacteria): steps toward a phylogenetic taxonomy. Cladistics : the International Journal of the Willi Hennig Society. 27: 9-28. PMID 34969203 DOI: 10.1111/j.1096-0031.2010.00312.x  0.347
2011 Dikow RB. Genome-level homology and phylogeny of Shewanella (Gammaproteobacteria: lteromonadales: Shewanellaceae). Bmc Genomics. 12: 237. PMID 21569439 DOI: 10.1186/1471-2164-12-237  0.483
2011 Dikow RB. Systematic relationships within the Vibrionaceae (Bacteria: Gammaproteobacteria): steps toward a phylogenetic taxonomy Cladistics. 27: 9-28. DOI: 10.1111/J.1096-0031.2010.00312.X  0.442
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