Yuichiro Takagi, Ph.D. - Publications

Affiliations: 
1998 Biochemistry and Molecular Biology University of Oklahoma Health Sciences Center, Oklahoma City, OK, United States 
 1998-2006 Structural Biology Stanford University School of Medicine, Palo Alto, CA, United States 
 2006- Biochemistry & Molecular Biology Indiana University School of Medicine, Indianapolis, IN, United States 

21 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Bag I, Chen Y, D'Orazio K, Lopez P, Wenzel S, Takagi Y, Lei EP. Isha is a su(Hw) mRNA-binding protein required for gypsy insulator function. G3 (Bethesda, Md.). PMID 35708663 DOI: 10.1093/g3journal/jkac152  0.465
2021 Fukudome A, Singh J, Mishra V, Reddem E, Martinez-Marquez F, Wenzel S, Yan R, Shiozaki M, Yu Z, Wang JC, Takagi Y, Pikaard CS. Structure and RNA template requirements of RNA-DEPENDENT RNA POLYMERASE 2. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34903670 DOI: 10.1073/pnas.2115899118  0.325
2021 Mishra V, Singh J, Wang F, Zhang Y, Fukudome A, Trinidad JC, Takagi Y, Pikaard CS. Assembly of a dsRNA synthesizing complex: RNA-DEPENDENT RNA POLYMERASE 2 contacts the largest subunit of NUCLEAR RNA POLYMERASE IV. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33753485 DOI: 10.1073/pnas.2019276118  0.361
2018 Rajendren S, Manning AC, Al-Awadi H, Yamada K, Takagi Y, Hundley HA. A protein-protein interaction underlies the molecular basis for substrate recognition by an adenosine-to-inosine RNA-editing enzyme. Nucleic Acids Research. PMID 30202880 DOI: 10.1093/Nar/Gky800  0.353
2015 Meyer PA, Li S, Zhang M, Yamada K, Takagi Y, Hartzog GA, Fu J. Structures and functions of the multiple KOW domains of transcription elongation factor Spt5. Molecular and Cellular Biology. PMID 26217010 DOI: 10.1128/Mcb.00520-15  0.433
2012 Cai G, Chaban YL, Imasaki T, Kovacs JA, Calero G, Penczek PA, Takagi Y, Asturias FJ. Interaction of the mediator head module with RNA polymerase II. Structure (London, England : 1993). 20: 899-910. PMID 22579255 DOI: 10.1016/j.str.2012.02.023  0.341
2011 Imasaki T, Calero G, Cai G, Tsai KL, Yamada K, Cardelli F, Erdjument-Bromage H, Tempst P, Berger I, Kornberg GL, Asturias FJ, Kornberg RD, Takagi Y. Architecture of the Mediator head module. Nature. 475: 240-3. PMID 21725323 DOI: 10.1038/nature10162  0.699
2010 Cai G, Imasaki T, Yamada K, Cardelli F, Takagi Y, Asturias FJ. Mediator head module structure and functional interactions. Nature Structural & Molecular Biology. 17: 273-9. PMID 20154708 DOI: 10.1038/nsmb.1757  0.349
2009 Cai G, Imasaki T, Takagi Y, Asturias FJ. Mediator structural conservation and implications for the regulation mechanism. Structure (London, England : 1993). 17: 559-67. PMID 19368889 DOI: 10.1016/j.str.2009.01.016  0.344
2008 Tóth-Petróczy A, Oldfield CJ, Simon I, Takagi Y, Dunker AK, Uversky VN, Fuxreiter M. Malleable machines in transcription regulation: the mediator complex. Plos Computational Biology. 4: e1000243. PMID 19096501 DOI: 10.1371/Journal.Pcbi.1000243  0.438
2006 Takagi Y, Calero G, Komori H, Brown JA, Ehrensberger AH, Hudmon A, Asturias F, Kornberg RD. Head module control of mediator interactions. Molecular Cell. 23: 355-64. PMID 16885025 DOI: 10.1016/J.Molcel.2006.06.007  0.689
2006 Takagi Y, Kornberg RD. Mediator as a general transcription factor. The Journal of Biological Chemistry. 281: 80-9. PMID 16263706 DOI: 10.1074/jbc.M508253200  0.679
2005 Takagi Y, Masuda CA, Chang WH, Komori H, Wang D, Hunter T, Joazeiro CA, Kornberg RD. Ubiquitin ligase activity of TFIIH and the transcriptional response to DNA damage. Molecular Cell. 18: 237-43. PMID 15837426 DOI: 10.1016/J.Molcel.2005.03.007  0.681
2003 Takagi Y, Komori H, Chang WH, Hudmon A, Erdjument-Bromage H, Tempst P, Kornberg RD. Revised subunit structure of yeast transcription factor IIH (TFIIH) and reconciliation with human TFIIH. The Journal of Biological Chemistry. 278: 43897-900. PMID 14500720 DOI: 10.1074/jbc.C300417200  0.721
2002 Davis JA, Takagi Y, Kornberg RD, Asturias FA. Structure of the yeast RNA polymerase II holoenzyme: Mediator conformation and polymerase interaction. Molecular Cell. 10: 409-15. PMID 12191485 DOI: 10.1016/S1097-2765(02)00598-1  0.688
2001 Li Y, Takagi Y, Jiang Y, Tokunaga M, Erdjument-Bromage H, Tempst P, Kornberg RD. A multiprotein complex that interacts with RNA polymerase II elongator. The Journal of Biological Chemistry. 276: 29628-31. PMID 11390369 DOI: 10.1074/jbc.C100274200  0.69
1999 Ohh M, Takagi Y, Aso T, Stebbins CE, Pavletich NP, Zbar B, Conaway RC, Conaway JW, Kaelin WG. Synthetic peptides define critical contacts between elongin C, elongin B, and the von Hippel-Lindau protein Journal of Clinical Investigation. 104: 1583-1591. PMID 10587522 DOI: 10.1172/Jci8161  0.718
1999 Brower CS, Shilatifard A, Mather T, Kamura T, Takagi Y, Haque D, Treharne A, Foundling SI, Conaway JW, Conaway RC. The Elongin B ubiquitin homology domain. Identification of Elongin B sequences important for interaction with Elongin C Journal of Biological Chemistry. 274: 13629-13636. PMID 10224134 DOI: 10.1074/Jbc.274.19.13629  0.655
1997 Takagi Y, Pause A, Conaway RC, Conaway JW. Identification of elongin C sequences required for interaction with the von Hippel-Lindau tumor suppressor protein. The Journal of Biological Chemistry. 272: 27444-9. PMID 9341197 DOI: 10.1074/Jbc.272.43.27444  0.726
1996 Takagi Y, Conaway RC, Conaway JW. Characterization of elongin C functional domains required for interaction with Elongin B and activation of Elongin A Journal of Biological Chemistry. 271: 25562-25568. PMID 8810329 DOI: 10.1074/Jbc.271.41.25562  0.768
1995 Takagi Y, Conaway JW, Conaway RC. A novel activity associated with RNA polymerase II elongation factor SIII: SIII directs promoter-independent transcription initiation by RNA polymerase II in the absence of initiation factors Journal of Biological Chemistry. 270: 24300-24305. PMID 7592640 DOI: 10.1074/Jbc.270.41.24300  0.703
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