| Year |
Citation |
Score |
| 2023 |
Kose C, Cao X, Dewey EB, Malkoç M, Adebali O, Sekelsky J, Lindsey-Boltz LA, Sancar A. Cross-species investigation into the requirement of XPA for nucleotide excision repair. Nucleic Acids Research. PMID 37994737 DOI: 10.1093/nar/gkad1104 |
0.377 |
|
| 2023 |
Akköse Ü, Adebali O. The interplay of 3D genome organization with UV-induced DNA damage and repair. The Journal of Biological Chemistry. 104679. PMID 37028766 DOI: 10.1016/j.jbc.2023.104679 |
0.333 |
|
| 2023 |
Adebali O, Yang Y, Neupane P, Dike NI, Boltz JL, Kose C, Braunstein M, Selby CP, Sancar A, Lindsey-Boltz LA. The Mfd protein is the Transcription-Repair Coupling Factor (TRCF) in Mycobacterium smegmatis. The Journal of Biological Chemistry. 103009. PMID 36775124 DOI: 10.1016/j.jbc.2023.103009 |
0.545 |
|
| 2022 |
Huang Y, Azgari C, Yin M, Chiou YY, Lindsey-Boltz LA, Sancar A, Hu J, Adebali O. Effects of replication domains on genome-wide UV-induced DNA damage and repair. Plos Genetics. 18: e1010426. PMID 36155646 DOI: 10.1371/journal.pgen.1010426 |
0.561 |
|
| 2022 |
Piepoli S, Barakat S, Nogay L, Şimşek B, Akkose U, Taskiran H, Tolay N, Gezen M, Yeşilada CY, Tuncay M, Adebali O, Atilgan C, Erman B. Sibling rivalry among the ZBTB transcription factor family: homodimers versus heterodimers. Life Science Alliance. 5. PMID 36096675 DOI: 10.26508/lsa.202201474 |
0.314 |
|
| 2022 |
Deger N, Cao X, Selby CP, Gulec S, Kawara H, Dewey EB, Wang L, Yang Y, Archibald S, Selcuk B, Adebali O, Sekelsky J, Sancar A, Liu Z. CSB-independent, XPC-dependent transcription-coupled repair in . Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35217627 DOI: 10.1073/pnas.2123163119 |
0.556 |
|
| 2021 |
Kaya S, Adebali O, Oztas O, Sancar A. Genome-wide Excision Repair Map of Cyclobutane Pyrimidine Dimers in Arabidopsis and the Roles of CSA1 and CSA2 Proteins in Transcription-Coupled Repair. Photochemistry and Photobiology. PMID 34525225 DOI: 10.1111/php.13519 |
0.557 |
|
| 2021 |
Akkose U, Kaya VO, Lindsey-Boltz L, Karagoz Z, Brown AD, Larsen PA, Yoder AD, Sancar A, Adebali O. Comparative analyses of two primate species diverged by more than 60 million years show different rates but similar distribution of genome-wide UV repair events. Bmc Genomics. 22: 600. PMID 34362292 DOI: 10.1186/s12864-021-07898-3 |
0.571 |
|
| 2020 |
Adebalİ O, Bİrcan A, Çİrcİ D, İŞlek B, KilinÇ Z, SelÇuk B, Turhan B. Phylogenetic analysis of SARS-CoV-2 genomes in Turkey. Turkish Journal of Biology = Turk Biyoloji Dergisi. 44: 146-156. PMID 32595351 DOI: 10.3906/Biy-2005-35 |
0.328 |
|
| 2019 |
Gumerov VM, Ortega DR, Adebali O, Ulrich LE, Zhulin IB. MiST 3.0: an updated microbial signal transduction database with an emphasis on chemosensory systems. Nucleic Acids Research. PMID 31754718 DOI: 10.1093/Nar/Gkz988 |
0.705 |
|
| 2019 |
Li W, Liu W, Kakoki A, Wang R, Adebali O, Jiang Y, Sancar A. Nucleotide excision repair capacity increases during differentiation of human embryonic carcinoma cells into neurons and muscle cells. The Journal of Biological Chemistry. PMID 30808711 DOI: 10.1074/Jbc.Ra119.007861 |
0.554 |
|
| 2019 |
Yimit A, Adebali O, Sancar A, Jiang Y. Differential damage and repair of DNA-adducts induced by anti-cancer drug cisplatin across mouse organs. Nature Communications. 10: 309. PMID 30659176 DOI: 10.1038/S41467-019-08290-2 |
0.552 |
|
| 2018 |
Hu J, Li W, Adebali O, Yang Y, Oztas O, Selby CP, Sancar A. Genome-wide mapping of nucleotide excision repair with XR-seq. Nature Protocols. PMID 30552409 DOI: 10.1038/S41596-018-0093-7 |
0.582 |
|
| 2018 |
Yang Y, Adebali O, Wu G, Selby CP, Chiou YY, Rashid N, Hu J, Hogenesch JB, Sancar A. Cisplatin-DNA adduct repair of transcribed genes is controlled by two circadian programs in mouse tissues. Proceedings of the National Academy of Sciences of the United States of America. PMID 29735688 DOI: 10.1073/Pnas.1804493115 |
0.556 |
|
| 2018 |
Oztas O, Selby CP, Sancar A, Adebali O. Genome-wide excision repair in Arabidopsis is coupled to transcription and reflects circadian gene expression patterns. Nature Communications. 9: 1503. PMID 29666379 DOI: 10.1038/S41467-018-03922-5 |
0.596 |
|
| 2018 |
Li W, Adebali O, Yang Y, Selby CP, Sancar A. Single-nucleotide resolution dynamic repair maps of UV damage ingenome. Proceedings of the National Academy of Sciences of the United States of America. PMID 29581276 DOI: 10.1073/Pnas.1801687115 |
0.59 |
|
| 2017 |
Adebali O, Sancar A, Selby CP. Mfd translocase is necessary and sufficient for transcription-coupled repair in Escherichia coli. The Journal of Biological Chemistry. PMID 28986449 DOI: 10.1074/Jbc.C117.818807 |
0.586 |
|
| 2017 |
Hu J, Selby CP, Adar S, Adebali O, Sancar A. Molecular mechanisms and genomic maps of DNA excision repair in E.coli and humans. The Journal of Biological Chemistry. PMID 28798238 DOI: 10.1074/Jbc.R117.807453 |
0.587 |
|
| 2017 |
Hu J, Adebali O, Adar S, Sancar A. Dynamic maps of UV damage formation and repair for the human genome. Proceedings of the National Academy of Sciences of the United States of America. PMID 28607063 DOI: 10.1073/Pnas.1706522114 |
0.589 |
|
| 2017 |
Li W, Hu J, Adebali O, Adar S, Yang Y, Chiou YY, Sancar A. Human genome-wide repair map of DNA damage caused by the cigarette smoke carcinogen benzo[a]pyrene. Proceedings of the National Academy of Sciences of the United States of America. PMID 28607059 DOI: 10.1073/Pnas.1706021114 |
0.604 |
|
| 2017 |
Adebali O, Petukh MG, Reznik AO, Tishkov AV, Upadhyay AA, Zhulin IB. Class III histidine kinases: a recently accessorized kinase domain in putative modulators of type IV pili based motility. Journal of Bacteriology. PMID 28484044 DOI: 10.1128/Jb.00218-17 |
0.715 |
|
| 2017 |
Adebali O, Chiou YY, Hu J, Sancar A, Selby CP. Genome-wide transcription-coupled repair in Escherichia coli is mediated by the Mfd translocase. Proceedings of the National Academy of Sciences of the United States of America. PMID 28167766 DOI: 10.1073/Pnas.1700230114 |
0.608 |
|
| 2016 |
Adebali O, Zhulin IB. Aquerium: A web application for comparative exploration of domain-based protein occurrences on the taxonomically clustered genome tree. Proteins. PMID 27802571 DOI: 10.1002/Prot.25199 |
0.659 |
|
| 2016 |
Upadhyay AA, Fleetwood AD, Adebali O, Finn RD, Zhulin IB. Cache Domains That are Homologous to, but Different from PAS Domains Comprise the Largest Superfamily of Extracellular Sensors in Prokaryotes. Plos Computational Biology. 12: e1004862. PMID 27049771 DOI: 10.1371/Journal.Pcbi.1004862 |
0.604 |
|
| 2016 |
Adebali O, Reznik AO, Ory DS, Zhulin IB. Establishing the precise evolutionary history of a gene improves prediction of disease-causing missense mutations. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 26890452 DOI: 10.1038/Gim.2015.208 |
0.531 |
|
| 2015 |
Adebali O, Ortega DR, Zhulin IB. CDvist: a webserver for identification and visualization of conserved domains in protein sequences. Bioinformatics (Oxford, England). 31: 1475-7. PMID 25527097 DOI: 10.1093/Bioinformatics/Btu836 |
0.621 |
|
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